VANDENBON Alexis

Last Update: 2021/06/28 10:29:28

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Name(Kanji/Kana/Abecedarium Latinum)
VANDENBON Alexis/バンデンボン アレクシス/Vandenbon, Alexis
Primary Affiliation(Org1/Job title)
Institute for Frontier Life and Medical Sciences/Senior Lecturer/ Junior Associate Professor
Faculty
Org1 Job title
Institute for Liberal Arts and Sciences (ILAS)
Academic Degree
Field(Japanese) Field(English) University(Japanese) University(English) Method
M.S. Katholieke HogeschoolBrugge-Oostende
M.S. Ghent University
博士(生命科学) 東京大学
Personal Website(s) (URL(s))
URL
https://genomics.virus.kyoto-u.ac.jp/alexisvdb/
ORCID ID
https://orcid.org/0000-0003-2180-5732
researchmap URL
https://researchmap.jp/alexisvdb
Research Topics
(Japanese)
エピジェネティクス・転写・転写後レベルにわたる遺伝子発現の制御機構の予測
(English)
Prediction of regulatory mechanisms of gene expression at the epigenetic, transcriptional, and post-transcriptional level.
Overview of the research
(English)
Biological data is often high-dimensional, and therefore difficult to process, visualize, and analyze. The goal of my research is the discovery of new insights in biological data using bioinformatics approaches. Recent projects include the prediction of new regulators from thousands of gene expression samples (RNA-seq), and understanding the timing of epigenetic modifications from ChIP-seq data. Currently, I am developing a bioinformatics method for finding interesting genes in single-cell RNA-seq data.
Fields of research (key words)
Key words(Japanese) Key words(English)
バイオインフォマティクス Bioinformatics
システムゲノム科学 System genome science
エピジェネティクス Epigenetics
転写後調節 Transcriptional regulation
シングルセル解析 Single-cell analysis
Published Papers
Author Author(Japanese) Author(English) Title Title(Japanese) Title(English) Bibliography Bibliography(Japanese) Bibliography(English) Publication date Refereed paper Language Publishing type Disclose
Yoshinari Nakatsuka, Ai Yaku, Tomohiro Handa, Alexis Vandenbon, Yuki Hikichi, Yasutaka Motomura, Ayuko Sato, Masanori Yoshinaga, Kiminobu Tanizawa, Kizuku Watanabe, Toyohiro Hirai, Kazuo Chin, Yutaka Suzuki, Takuya Uehata, Takashi Mino, Tohru Tsujimura, Kazuyo Moro, Osamu Takeuchi Yoshinari Nakatsuka, Ai Yaku, Tomohiro Handa, Alexis Vandenbon, Yuki Hikichi, Yasutaka Motomura, Ayuko Sato, Masanori Yoshinaga, Kiminobu Tanizawa, Kizuku Watanabe, Toyohiro Hirai, Kazuo Chin, Yutaka Suzuki, Takuya Uehata, Takashi Mino, Tohru Tsujimura, Kazuyo Moro, Osamu Takeuchi Yoshinari Nakatsuka, Ai Yaku, Tomohiro Handa, Alexis Vandenbon, Yuki Hikichi, Yasutaka Motomura, Ayuko Sato, Masanori Yoshinaga, Kiminobu Tanizawa, Kizuku Watanabe, Toyohiro Hirai, Kazuo Chin, Yutaka Suzuki, Takuya Uehata, Takashi Mino, Tohru Tsujimura, Kazuyo Moro, Osamu Takeuchi Profibrotic function of pulmonary group 2 innate lymphoid cells is controlled by regnase-1. Profibrotic function of pulmonary group 2 innate lymphoid cells is controlled by regnase-1. Profibrotic function of pulmonary group 2 innate lymphoid cells is controlled by regnase-1. The European respiratory journal, 57, 3 The European respiratory journal, 57, 3 The European respiratory journal, 57, 3 2021/03 Refereed English Research paper(scientific journal) Disclose to all
Alexis Vandenbon, Diego Diez Alexis Vandenbon, Diego Diez Alexis Vandenbon, Diego Diez A clustering-independent method for finding differentially expressed genes in single-cell transcriptome data. A clustering-independent method for finding differentially expressed genes in single-cell transcriptome data. A clustering-independent method for finding differentially expressed genes in single-cell transcriptome data. Nature communications, 11, 1, 4318-4318 Nature communications, 11, 1, 4318-4318 Nature communications, 11, 1, 4318-4318 2020/08/28 Refereed English Research paper(scientific journal) Disclose to all
Kenta Maruyama, Hiroyasu Kidoya, Naoki Takemura, Erika Sugisawa, Osamu Takeuchi, Takeshi Kondo, Mohammed Mansour Abbas Eid, Hiroki Tanaka, Mikaël M Martino, Nobuyuki Takakura, Yasunori Takayama, Shizuo Akira, Alexis Vandenbon, Yutaro Kumagai Kenta Maruyama, Hiroyasu Kidoya, Naoki Takemura, Erika Sugisawa, Osamu Takeuchi, Takeshi Kondo, Mohammed Mansour Abbas Eid, Hiroki Tanaka, Mikaël M Martino, Nobuyuki Takakura, Yasunori Takayama, Shizuo Akira, Alexis Vandenbon, Yutaro Kumagai Kenta Maruyama, Hiroyasu Kidoya, Naoki Takemura, Erika Sugisawa, Osamu Takeuchi, Takeshi Kondo, Mohammed Mansour Abbas Eid, Hiroki Tanaka, Mikaël M Martino, Nobuyuki Takakura, Yasunori Takayama, Shizuo Akira, Alexis Vandenbon, Yutaro Kumagai Zinc Finger Protein St18 Protects against Septic Death by Inhibiting VEGF-A from Macrophages. Zinc Finger Protein St18 Protects against Septic Death by Inhibiting VEGF-A from Macrophages. Zinc Finger Protein St18 Protects against Septic Death by Inhibiting VEGF-A from Macrophages. Cell reports, 32, 2, 107906-107906 Cell reports, 32, 2, 107906-107906 Cell reports, 32, 2, 107906-107906 2020/07/14 Refereed English Research paper(scientific journal) Disclose to all
Fabian Hia, Sheng Fan Yang, Yuichi Shichino, Masanori Yoshinaga, Yasuhiro Murakawa, Alexis Vandenbon, Akira Fukao, Toshinobu Fujiwara, Markus Landthaler, Tohru Natsume, Shungo Adachi, Shintaro Iwasaki, Osamu Takeuchi Fabian Hia, Sheng Fan Yang, Yuichi Shichino, Masanori Yoshinaga, Yasuhiro Murakawa, Alexis Vandenbon, Akira Fukao, Toshinobu Fujiwara, Markus Landthaler, Tohru Natsume, Shungo Adachi, Shintaro Iwasaki, Osamu Takeuchi Fabian Hia, Sheng Fan Yang, Yuichi Shichino, Masanori Yoshinaga, Yasuhiro Murakawa, Alexis Vandenbon, Akira Fukao, Toshinobu Fujiwara, Markus Landthaler, Tohru Natsume, Shungo Adachi, Shintaro Iwasaki, Osamu Takeuchi Codon bias confers stability to human mRNAs. Codon bias confers stability to human mRNAs. Codon bias confers stability to human mRNAs. EMBO reports, 20, 11, e48220 EMBO reports, 20, 11, e48220 EMBO reports, 20, 11, e48220 2019/11/05 Refereed English Research paper(scientific journal) Disclose to all
Alexis Vandenbon, Yutaro Kumagai, Mengjie Lin, Yutaka Suzuki, Kenta Nakai Alexis Vandenbon, Yutaro Kumagai, Mengjie Lin, Yutaka Suzuki, Kenta Nakai Alexis Vandenbon, Yutaro Kumagai, Mengjie Lin, Yutaka Suzuki, Kenta Nakai Waves of chromatin modifications in mouse dendritic cells in response to LPS stimulation. Waves of chromatin modifications in mouse dendritic cells in response to LPS stimulation. Waves of chromatin modifications in mouse dendritic cells in response to LPS stimulation. Genome biology, 19, 1, 138-138 Genome biology, 19, 1, 138-138 Genome biology, 19, 1, 138-138 2018/09/19 Refereed English Research paper(scientific journal) Disclose to all
Yoshinari Nakatsuka, Alexis Vandenbon, Takashi Mino, Masanori Yoshinaga, Takuya Uehata, Xiaotong Cui, Ayuko Sato, Tohru Tsujimura, Yutaka Suzuki, Atsuyasu Sato, Tomohiro Handa, Kazuo Chin, Teiji Sawa, Toyohiro Hirai, Osamu Takeuchi Yoshinari Nakatsuka, Alexis Vandenbon, Takashi Mino, Masanori Yoshinaga, Takuya Uehata, Xiaotong Cui, Ayuko Sato, Tohru Tsujimura, Yutaka Suzuki, Atsuyasu Sato, Tomohiro Handa, Kazuo Chin, Teiji Sawa, Toyohiro Hirai, Osamu Takeuchi Yoshinari Nakatsuka, Alexis Vandenbon, Takashi Mino, Masanori Yoshinaga, Takuya Uehata, Xiaotong Cui, Ayuko Sato, Tohru Tsujimura, Yutaka Suzuki, Atsuyasu Sato, Tomohiro Handa, Kazuo Chin, Teiji Sawa, Toyohiro Hirai, Osamu Takeuchi Pulmonary Regnase-1 orchestrates the interplay of epithelium and adaptive immune systems to protect against pneumonia. Pulmonary Regnase-1 orchestrates the interplay of epithelium and adaptive immune systems to protect against pneumonia. Pulmonary Regnase-1 orchestrates the interplay of epithelium and adaptive immune systems to protect against pneumonia. Mucosal immunology, 11, 4, 1203-1218 Mucosal immunology, 11, 4, 1203-1218 Mucosal immunology, 11, 4, 1203-1218 2018/07 Refereed English Research paper(scientific journal) Disclose to all
Yohko Kitagawa, Naganari Ohkura, Yujiro Kidani, Alexis Vandenbon, Keiji Hirota, Ryoji Kawakami, Keiko Yasuda, Daisuke Motooka, Shota Nakamura, Motonari Kondo, Ichiro Taniuchi, Terumi Kohwi-Shigematsu, Shimon Sakaguchi Yohko Kitagawa, Naganari Ohkura, Yujiro Kidani, Alexis Vandenbon, Keiji Hirota, Ryoji Kawakami, Keiko Yasuda, Daisuke Motooka, Shota Nakamura, Motonari Kondo, Ichiro Taniuchi, Terumi Kohwi-Shigematsu, Shimon Sakaguchi Yohko Kitagawa, Naganari Ohkura, Yujiro Kidani, Alexis Vandenbon, Keiji Hirota, Ryoji Kawakami, Keiko Yasuda, Daisuke Motooka, Shota Nakamura, Motonari Kondo, Ichiro Taniuchi, Terumi Kohwi-Shigematsu, Shimon Sakaguchi Guidance of regulatory T cell development by Satb1-dependent super-enhancer establishment (vol 18, pg 173, 2017) Guidance of regulatory T cell development by Satb1-dependent super-enhancer establishment (vol 18, pg 173, 2017) Guidance of regulatory T cell development by Satb1-dependent super-enhancer establishment (vol 18, pg 173, 2017) NATURE IMMUNOLOGY, 18, 11, 1270-1270 NATURE IMMUNOLOGY, 18, 11, 1270-1270 NATURE IMMUNOLOGY, 18, 11, 1270-1270 2017/11 Refereed English Disclose to all
Masanori Yoshinaga, Yoshinari Nakatsuka, Alexis Vandenbon, Daisuke Ori, Takuya Uehata, Tohru Tsujimura, Yutaka Suzuki, Takashi Mino, Osamu Takeuchi Masanori Yoshinaga, Yoshinari Nakatsuka, Alexis Vandenbon, Daisuke Ori, Takuya Uehata, Tohru Tsujimura, Yutaka Suzuki, Takashi Mino, Osamu Takeuchi Masanori Yoshinaga, Yoshinari Nakatsuka, Alexis Vandenbon, Daisuke Ori, Takuya Uehata, Tohru Tsujimura, Yutaka Suzuki, Takashi Mino, Osamu Takeuchi Regnase-1 Maintains Iron Homeostasis via the Degradation of Transferrin Receptor 1 and Prolyl-Hydroxylase- Domain-Containing Protein 3 mRNAs Regnase-1 Maintains Iron Homeostasis via the Degradation of Transferrin Receptor 1 and Prolyl-Hydroxylase- Domain-Containing Protein 3 mRNAs Regnase-1 Maintains Iron Homeostasis via the Degradation of Transferrin Receptor 1 and Prolyl-Hydroxylase- Domain-Containing Protein 3 mRNAs CELL REPORTS, 19, 8, 1614-1630 CELL REPORTS, 19, 8, 1614-1630 CELL REPORTS, 19, 8, 1614-1630 2017/05 Refereed English Research paper(scientific journal) Disclose to all
Yosvany Lopez, Alexis Vandenbon, Akinao Nose, Kenta Nakai Yosvany Lopez, Alexis Vandenbon, Akinao Nose, Kenta Nakai Yosvany Lopez, Alexis Vandenbon, Akinao Nose, Kenta Nakai Modeling the cis-regulatory modules of genes expressed in developmental stages of Drosophila melanogaster Modeling the cis-regulatory modules of genes expressed in developmental stages of Drosophila melanogaster Modeling the cis-regulatory modules of genes expressed in developmental stages of Drosophila melanogaster PEERJ, 5, e3389 PEERJ, 5, e3389 PEERJ, 5, e3389 2017/05 Refereed English Research paper(scientific journal) Disclose to all
Hitomi Matsushima, Yutaro Kumagai, Alexis Vandenbon, Hideo Kataoka, Miki Kadena, Haruka Fukamachi, Takafumi Arimoto, Hirobumi Morisaki, Nagatoshi Fujiwara, Nobuo Okahashi, Hirotaka Kuwata Hitomi Matsushima, Yutaro Kumagai, Alexis Vandenbon, Hideo Kataoka, Miki Kadena, Haruka Fukamachi, Takafumi Arimoto, Hirobumi Morisaki, Nagatoshi Fujiwara, Nobuo Okahashi, Hirotaka Kuwata Hitomi Matsushima, Yutaro Kumagai, Alexis Vandenbon, Hideo Kataoka, Miki Kadena, Haruka Fukamachi, Takafumi Arimoto, Hirobumi Morisaki, Nagatoshi Fujiwara, Nobuo Okahashi, Hirotaka Kuwata Microarray analysis of macrophage response to infection with Streptococcus oralis reveals the immunosuppressive effect of hydrogen peroxide Microarray analysis of macrophage response to infection with Streptococcus oralis reveals the immunosuppressive effect of hydrogen peroxide Microarray analysis of macrophage response to infection with Streptococcus oralis reveals the immunosuppressive effect of hydrogen peroxide BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 485, 2, 461-467 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 485, 2, 461-467 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 485, 2, 461-467 2017/04 Refereed English Research paper(scientific journal) Disclose to all
Miki Kadena, Yutaro Kumagai, Alexis Vandenbon, Hitomi Matsushima, Haruka Fukamachi, Noboru Maruta, Hideo Kataoka, Takafumi Arimoto, Hirobumi Morisaki, Takahiro Funatsu, Hirotaka Kuwata Miki Kadena, Yutaro Kumagai, Alexis Vandenbon, Hitomi Matsushima, Haruka Fukamachi, Noboru Maruta, Hideo Kataoka, Takafumi Arimoto, Hirobumi Morisaki, Takahiro Funatsu, Hirotaka Kuwata Miki Kadena, Yutaro Kumagai, Alexis Vandenbon, Hitomi Matsushima, Haruka Fukamachi, Noboru Maruta, Hideo Kataoka, Takafumi Arimoto, Hirobumi Morisaki, Takahiro Funatsu, Hirotaka Kuwata Microarray and gene co -expression analysis reveals that melatonin attenuates immune responses and modulates actin rearrangement in macrophages Microarray and gene co -expression analysis reveals that melatonin attenuates immune responses and modulates actin rearrangement in macrophages Microarray and gene co -expression analysis reveals that melatonin attenuates immune responses and modulates actin rearrangement in macrophages BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 485, 2, 414-420 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 485, 2, 414-420 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 485, 2, 414-420 2017/04 Refereed English Research paper(scientific journal) Disclose to all
Kitagawa Y, Ohkura N, Kidani Y, Vandenbon A, Hirota K, Kawakami R, Yasuda K, Motooka D, Nakamura S, Kondo M, Taniuchi I, Kohwi-Shigematsu T, Sakaguchi S Kitagawa Y, Ohkura N, Kidani Y, Vandenbon A, Hirota K, Kawakami R, Yasuda K, Motooka D, Nakamura S, Kondo M, Taniuchi I, Kohwi-Shigematsu T, Sakaguchi S Kitagawa Y, Ohkura N, Kidani Y, Vandenbon A, Hirota K, Kawakami R, Yasuda K, Motooka D, Nakamura S, Kondo M, Taniuchi I, Kohwi-Shigematsu T, Sakaguchi S Erratum: Guidance of regulatory T cell development by Satb1-dependent super-enhancer establishment. Erratum: Guidance of regulatory T cell development by Satb1-dependent super-enhancer establishment. Erratum: Guidance of regulatory T cell development by Satb1-dependent super-enhancer establishment. Nature immunology, 18, 4, 474 Nature immunology, 18, 4, 474 Nature immunology, 18, 4, 474 2017/03 Refereed Disclose to all
Yohko Kitagawa, Naganari Ohkura, Yujiro Kidani, Alexis Vandenbon, Keiji Hirota, Ryoji Kawakami, Keiko Yasuda, Daisuke Motooka, Shota Nakamura, Motonari Kondo, Ichiro Taniuchi, Terumi Kohwi-Shigematsu, Shimon Sakaguchi Yohko Kitagawa, Naganari Ohkura, Yujiro Kidani, Alexis Vandenbon, Keiji Hirota, Ryoji Kawakami, Keiko Yasuda, Daisuke Motooka, Shota Nakamura, Motonari Kondo, Ichiro Taniuchi, Terumi Kohwi-Shigematsu, Shimon Sakaguchi Yohko Kitagawa, Naganari Ohkura, Yujiro Kidani, Alexis Vandenbon, Keiji Hirota, Ryoji Kawakami, Keiko Yasuda, Daisuke Motooka, Shota Nakamura, Motonari Kondo, Ichiro Taniuchi, Terumi Kohwi-Shigematsu, Shimon Sakaguchi Guidance of regulatory T cell development by Satb1-dependent super-enhancer establishment Guidance of regulatory T cell development by Satb1-dependent super-enhancer establishment Guidance of regulatory T cell development by Satb1-dependent super-enhancer establishment NATURE IMMUNOLOGY, 18, 2, 173-183 NATURE IMMUNOLOGY, 18, 2, 173-183 NATURE IMMUNOLOGY, 18, 2, 173-183 2017/02 Refereed English Research paper(scientific journal) Disclose to all
Bakhtiyor Nosirov, Joël Billaud, Alexis Vandenbon, Diego Diez, Edward Wijaya, Ken J Ishii, Shunsuke Teraguchi, Daron M Standley Bakhtiyor Nosirov, Joël Billaud, Alexis Vandenbon, Diego Diez, Edward Wijaya, Ken J Ishii, Shunsuke Teraguchi, Daron M Standley Bakhtiyor Nosirov, Joël Billaud, Alexis Vandenbon, Diego Diez, Edward Wijaya, Ken J Ishii, Shunsuke Teraguchi, Daron M Standley Mapping circulating serum miRNAs to their immune-related target mRNAs. Mapping circulating serum miRNAs to their immune-related target mRNAs. Mapping circulating serum miRNAs to their immune-related target mRNAs. Advances and applications in bioinformatics and chemistry : AABC, 10, 1-9 Advances and applications in bioinformatics and chemistry : AABC, 10, 1-9 Advances and applications in bioinformatics and chemistry : AABC, 10, 1-9 2017 Refereed English Research paper(scientific journal) Disclose to all
Yutaro Kumagai, Alexis Vandenbon, Shunsuke Teraguchi, Shizuo Akira, Yutaka Suzuki Yutaro Kumagai, Alexis Vandenbon, Shunsuke Teraguchi, Shizuo Akira, Yutaka Suzuki Yutaro Kumagai, Alexis Vandenbon, Shunsuke Teraguchi, Shizuo Akira, Yutaka Suzuki Genome-wide map of RNA degradation kinetics patterns in dendritic cells after LPS stimulation facilitates identification of primary sequence and secondary structure motifs in mRNAs Genome-wide map of RNA degradation kinetics patterns in dendritic cells after LPS stimulation facilitates identification of primary sequence and secondary structure motifs in mRNAs Genome-wide map of RNA degradation kinetics patterns in dendritic cells after LPS stimulation facilitates identification of primary sequence and secondary structure motifs in mRNAs BMC GENOMICS, 17, Suppl 13, 1032 BMC GENOMICS, 17, Suppl 13, 1032 BMC GENOMICS, 17, Suppl 13, 1032 2016/12 Refereed English Research paper(scientific journal) Disclose to all
Ryoyo Ikebuchi, Shunsuke Teraguchi, Alexis Vandenbon, Tetsuya Honda, Francis H. W. Shand, Yasutaka Nakanishi, Takeshi Watanabe, Michio Tomura Ryoyo Ikebuchi, Shunsuke Teraguchi, Alexis Vandenbon, Tetsuya Honda, Francis H. W. Shand, Yasutaka Nakanishi, Takeshi Watanabe, Michio Tomura Ryoyo Ikebuchi, Shunsuke Teraguchi, Alexis Vandenbon, Tetsuya Honda, Francis H. W. Shand, Yasutaka Nakanishi, Takeshi Watanabe, Michio Tomura A rare subset of skin-tropic regulatory T cells expressing Il10/Gzmb inhibits the cutaneous immune response A rare subset of skin-tropic regulatory T cells expressing Il10/Gzmb inhibits the cutaneous immune response A rare subset of skin-tropic regulatory T cells expressing Il10/Gzmb inhibits the cutaneous immune response SCIENTIFIC REPORTS, 6, 35002 SCIENTIFIC REPORTS, 6, 35002 SCIENTIFIC REPORTS, 6, 35002 2016/10 Refereed English Research paper(scientific journal) Disclose to all
Alexis Vandenbon, Viet H. Dinh, Norihisa Mikami, Yohko Kitagawa, Shunsuke Teraguchi, Naganari Ohkura, Shimon Sakaguchi Alexis Vandenbon, Viet H. Dinh, Norihisa Mikami, Yohko Kitagawa, Shunsuke Teraguchi, Naganari Ohkura, Shimon Sakaguchi Alexis Vandenbon, Viet H. Dinh, Norihisa Mikami, Yohko Kitagawa, Shunsuke Teraguchi, Naganari Ohkura, Shimon Sakaguchi Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 113, 17, E2393-E2402 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 113, 17, E2393-E2402 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 113, 17, E2393-E2402 2016/04 Refereed English Research paper(scientific journal) Disclose to all
Takashi Mino, Yasuhiro Murakawa, Akira Fukao, Alexis Vandenbon, Hans-Hermann Wessels, Daisuke Ori, Takuya Uehata, Sarang Tartey, Shizuo Akira, Yutaka Suzuki, Carola G. Vinuesa, Uwe Ohler, Daron M. Standley, Markus Landthaler, Toshinobu Fujiwara, Osamu Takeuchi Takashi Mino, Yasuhiro Murakawa, Akira Fukao, Alexis Vandenbon, Hans-Hermann Wessels, Daisuke Ori, Takuya Uehata, Sarang Tartey, Shizuo Akira, Yutaka Suzuki, Carola G. Vinuesa, Uwe Ohler, Daron M. Standley, Markus Landthaler, Toshinobu Fujiwara, Osamu Takeuchi Takashi Mino, Yasuhiro Murakawa, Akira Fukao, Alexis Vandenbon, Hans-Hermann Wessels, Daisuke Ori, Takuya Uehata, Sarang Tartey, Shizuo Akira, Yutaka Suzuki, Carola G. Vinuesa, Uwe Ohler, Daron M. Standley, Markus Landthaler, Toshinobu Fujiwara, Osamu Takeuchi Regnase-1 and Roquin Regulate a Common Element in Inflammatory mRNAs by Spatiotemporally Distinct Mechanisms Regnase-1 and Roquin Regulate a Common Element in Inflammatory mRNAs by Spatiotemporally Distinct Mechanisms Regnase-1 and Roquin Regulate a Common Element in Inflammatory mRNAs by Spatiotemporally Distinct Mechanisms CELL, 161, 5, 1058-1073 CELL, 161, 5, 1058-1073 CELL, 161, 5, 1058-1073 2015/05 Refereed English Research paper(scientific journal) Disclose to all
Motoyasu Onishi, Koji Ozasa, Kouji Kobiyama, Keiichi Ohata, Mitsutaka Kitano, Keiichi Taniguchi, Tomoyuki Homma, Masanori Kobayashi, Akihiko Sato, Yuko Katakai, Yasuhiro Yasutomi, Edward Wijaya, Yoshinobu Igarashi, Noriyuki Nakatsu, Wataru Ise, Takeshi Inoue, Hiroshi Yamada, Alexis Vandenbon, Daron M. Standley, Tomohiro Kurosaki, Cevayir Coban, Taiki Aoshi, Etsushi Kuroda, Ken J. Ishii Onishi M, Ozasa K, Kobiyama K, Ohata K, Kitano M, Taniguchi K, Homma T, Kobayashi M, Sato A, Katakai Y, Yasutomi Y, Wijaya E, Igarashi Y, Nakatsu N, Ise W, Inoue T, Yamada H, Vandenbon A, Standley DM, Kurosaki T, Coban C, Aoshi T, Kuroda E, Ishii KJ Motoyasu Onishi, Koji Ozasa, Kouji Kobiyama, Keiichi Ohata, Mitsutaka Kitano, Keiichi Taniguchi, Tomoyuki Homma, Masanori Kobayashi, Akihiko Sato, Yuko Katakai, Yasuhiro Yasutomi, Edward Wijaya, Yoshinobu Igarashi, Noriyuki Nakatsu, Wataru Ise, Takeshi Inoue, Hiroshi Yamada, Alexis Vandenbon, Daron M. Standley, Tomohiro Kurosaki, Cevayir Coban, Taiki Aoshi, Etsushi Kuroda, Ken J. Ishii Hydroxypropyl-beta-Cyclodextrin Spikes Local Inflammation That Induces Th2 Cell and T Follicular Helper Cell Responses to the Coadministered Antigen Hydroxypropyl-β-cyclodextrin spikes local inflammation that induces Th2 cell and T follicular helper cell responses to the coadministered antigen. Hydroxypropyl-beta-Cyclodextrin Spikes Local Inflammation That Induces Th2 Cell and T Follicular Helper Cell Responses to the Coadministered Antigen JOURNAL OF IMMUNOLOGY, 194, 6, 2673-2682 Journal of immunology (Baltimore, Md. : 1950), 194, 6, 2673-2682 JOURNAL OF IMMUNOLOGY, 194, 6, 2673-2682 2015/03 Refereed English Research paper(scientific journal) Disclose to all
Alexis Vandenbon, Shunsuke Teraguchi, Osamu Takeuchi, Yutaka Suzuki, Daron M. Standley Alexis Vandenbon, Shunsuke Teraguchi, Osamu Takeuchi, Yutaka Suzuki, Daron M. Standley Alexis Vandenbon, Shunsuke Teraguchi, Osamu Takeuchi, Yutaka Suzuki, Daron M. Standley Dynamics of enhancers in myeloid antigen presenting cells upon LPS stimulation Dynamics of enhancers in myeloid antigen presenting cells upon LPS stimulation Dynamics of enhancers in myeloid antigen presenting cells upon LPS stimulation BMC GENOMICS, 15, S4 BMC GENOMICS, 15, S4 BMC GENOMICS, 15, S4 2014/12 Refereed English Research paper(scientific journal) Disclose to all
Sarang Tartey, Kazufumi Matsushita, Alexis Vandenbon, Daisuke Ori, Tomoko Imamura, Takashi Mino, Daron M. Standley, Jules A. Hoffmann, Jean-Marc Reichhart, Shizuo Akira, Osamu Takeuchi Tartey S, Matsushita K, Vandenbon A, Ori D, Imamura T, Mino T, Standley DM, Hoffmann JA, Reichhart JM, Akira S, Takeuchi O Sarang Tartey, Kazufumi Matsushita, Alexis Vandenbon, Daisuke Ori, Tomoko Imamura, Takashi Mino, Daron M. Standley, Jules A. Hoffmann, Jean-Marc Reichhart, Shizuo Akira, Osamu Takeuchi Akirin2 is critical for inducing inflammatory genes by bridging I kappa B-zeta and the SWI/SNF complex Akirin2 is critical for inducing inflammatory genes by bridging IκB-ζ and the SWI/SNF complex. Akirin2 is critical for inducing inflammatory genes by bridging I kappa B-zeta and the SWI/SNF complex EMBO JOURNAL, 33, 20, 2332-2348 The EMBO journal, 33, 20, 2332-2348 EMBO JOURNAL, 33, 20, 2332-2348 2014/10 Refereed English Research paper(scientific journal) Disclose to all
Yosvany Lopez, Alexis Vandenbon, Kenta Nakai Yosvany Lopez, Alexis Vandenbon, Kenta Nakai Yosvany Lopez, Alexis Vandenbon, Kenta Nakai A Set of Structural Features Defines the Cis-Regulatory Modules of Antenna-Expressed Genes in Drosophila melanogaster A Set of Structural Features Defines the Cis-Regulatory Modules of Antenna-Expressed Genes in Drosophila melanogaster A Set of Structural Features Defines the Cis-Regulatory Modules of Antenna-Expressed Genes in Drosophila melanogaster PLOS ONE, 9, 8, e104342 PLOS ONE, 9, 8, e104342 PLOS ONE, 9, 8, e104342 2014/08 Refereed English Research paper(scientific journal) Disclose to all
Hiromasa Morikawa, Naganari Ohkura, Alexis Vandenbon, Masayoshi Itoh, Sayaka Nagao-Sato, Hideya Kawaji, Timo Lassmann, Piero Carninci, Yoshihide Hayashizaki, Alistair R. R. Forrest, Daron M. Standley, Hiroshi Date, Shimon Sakaguchi Hiromasa Morikawa, Naganari Ohkura, Alexis Vandenbon, Masayoshi Itoh, Sayaka Nagao-Sato, Hideya Kawaji, Timo Lassmann, Piero Carninci, Yoshihide Hayashizaki, Alistair R. R. Forrest, Daron M. Standley, Hiroshi Date, Shimon Sakaguchi Hiromasa Morikawa, Naganari Ohkura, Alexis Vandenbon, Masayoshi Itoh, Sayaka Nagao-Sato, Hideya Kawaji, Timo Lassmann, Piero Carninci, Yoshihide Hayashizaki, Alistair R. R. Forrest, Daron M. Standley, Hiroshi Date, Shimon Sakaguchi Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 111, 14, 5289-5294 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 111, 14, 5289-5294 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 111, 14, 5289-5294 2014/04 Refereed English Research paper(scientific journal) Disclose to all
Takuya Uehata, Hidenori Iwasaki, Alexis Vandenbon, Kazufumi Matsushita, Eduardo Hernandez-Cuellar, Kanako Kuniyoshi, Takashi Satoh, Takashi Mino, Yutaka Suzuki, Daron M Standley, Tohru Tsujimura, Hiromi Rakugi, Yoshitaka Isaka, Osamu Takeuchi, Shizuo Akira Takuya Uehata, Hidenori Iwasaki, Alexis Vandenbon, Kazufumi Matsushita, Eduardo Hernandez-Cuellar, Kanako Kuniyoshi, Takashi Satoh, Takashi Mino, Yutaka Suzuki, Daron M Standley, Tohru Tsujimura, Hiromi Rakugi, Yoshitaka Isaka, Osamu Takeuchi, Shizuo Akira Takuya Uehata, Hidenori Iwasaki, Alexis Vandenbon, Kazufumi Matsushita, Eduardo Hernandez-Cuellar, Kanako Kuniyoshi, Takashi Satoh, Takashi Mino, Yutaka Suzuki, Daron M Standley, Tohru Tsujimura, Hiromi Rakugi, Yoshitaka Isaka, Osamu Takeuchi, Shizuo Akira Malt1-induced cleavage of regnase-1 in CD4(+) helper T cells regulates immune activation. Malt1-induced cleavage of regnase-1 in CD4(+) helper T cells regulates immune activation. Malt1-induced cleavage of regnase-1 in CD4(+) helper T cells regulates immune activation. Cell, 153, 5, 1036-49 Cell, 153, 5, 1036-49 Cell, 153, 5, 1036-49 2013/05/23 Refereed English Disclose to all
Alexis Vandenbon, Yutaro Kumagai, Shunsuke Teraguchi, Karlou Mar Amada, Shizuo Akira, Daron M. Standley Alexis Vandenbon, Yutaro Kumagai, Shunsuke Teraguchi, Karlou Mar Amada, Shizuo Akira, Daron M. Standley Alexis Vandenbon, Yutaro Kumagai, Shunsuke Teraguchi, Karlou Mar Amada, Shizuo Akira, Daron M. Standley A Parzen window-based approach for the detection of locally enriched transcription factor binding sites A Parzen window-based approach for the detection of locally enriched transcription factor binding sites A Parzen window-based approach for the detection of locally enriched transcription factor binding sites BMC BIOINFORMATICS, 14, 26 BMC BIOINFORMATICS, 14, 26 BMC BIOINFORMATICS, 14, 26 2013/01 Refereed English Research paper(scientific journal) Disclose to all
Kenta Maruyama, Masahiro Fukasaka, Alexis Vandenbon, Tatsuya Saitoh, Takumi Kawasaki, Takeshi Kondo, Kazunari K. Yokoyama, Hiroyasu Kidoya, Nobuyuki Takakura, Daron Standley, Osamu Takeuchi, Shizuo Akira Kenta Maruyama, Masahiro Fukasaka, Alexis Vandenbon, Tatsuya Saitoh, Takumi Kawasaki, Takeshi Kondo, Kazunari K. Yokoyama, Hiroyasu Kidoya, Nobuyuki Takakura, Daron Standley, Osamu Takeuchi, Shizuo Akira Kenta Maruyama, Masahiro Fukasaka, Alexis Vandenbon, Tatsuya Saitoh, Takumi Kawasaki, Takeshi Kondo, Kazunari K. Yokoyama, Hiroyasu Kidoya, Nobuyuki Takakura, Daron Standley, Osamu Takeuchi, Shizuo Akira The Transcription Factor Jdp2 Controls Bone Homeostasis and Antibacterial Immunity by Regulating Osteoclast and Neutrophil Differentiation The Transcription Factor Jdp2 Controls Bone Homeostasis and Antibacterial Immunity by Regulating Osteoclast and Neutrophil Differentiation The Transcription Factor Jdp2 Controls Bone Homeostasis and Antibacterial Immunity by Regulating Osteoclast and Neutrophil Differentiation IMMUNITY, 37, 6, 1024-1036 IMMUNITY, 37, 6, 1024-1036 IMMUNITY, 37, 6, 1024-1036 2012/12 Refereed English Research paper(scientific journal) Disclose to all
Alexis Vandenbon, Yutaro Kumagai, Shizuo Akira, Daron M. Standley Alexis Vandenbon, Yutaro Kumagai, Shizuo Akira, Daron M. Standley Alexis Vandenbon, Yutaro Kumagai, Shizuo Akira, Daron M. Standley A novel unbiased measure for motif co-occurrence predicts combinatorial regulation of transcription A novel unbiased measure for motif co-occurrence predicts combinatorial regulation of transcription A novel unbiased measure for motif co-occurrence predicts combinatorial regulation of transcription BMC GENOMICS, 13, S11 BMC GENOMICS, 13, S11 BMC GENOMICS, 13, S11 2012/12 Refereed English Research paper(scientific journal) Disclose to all
Alexis Vandenbon, Shunsuke Teraguchi, Shizuo Akira, Kiyoshi Takeda, Daron M. Standley Alexis Vandenbon, Shunsuke Teraguchi, Shizuo Akira, Kiyoshi Takeda, Daron M. Standley Alexis Vandenbon, Shunsuke Teraguchi, Shizuo Akira, Kiyoshi Takeda, Daron M. Standley Systems biology approaches to toll-like receptor signaling Systems biology approaches to toll-like receptor signaling Systems biology approaches to toll-like receptor signaling WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE, 4, 5, 497-507 WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE, 4, 5, 497-507 WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE, 4, 5, 497-507 2012/09 Refereed English Research paper(scientific journal) Disclose to all
Shunsuke Teraguchi, Yutaro Kumagai, Alexis Vandenbon, Shizuo Akira, Daron M. Standley Shunsuke Teraguchi, Yutaro Kumagai, Alexis Vandenbon, Shizuo Akira, Daron M. Standley Shunsuke Teraguchi, Yutaro Kumagai, Alexis Vandenbon, Shizuo Akira, Daron M. Standley Stochastic binary modeling of cells in continuous time as an alternative to biochemical reaction equations Stochastic binary modeling of cells in continuous time as an alternative to biochemical reaction equations Stochastic binary modeling of cells in continuous time as an alternative to biochemical reaction equations PHYSICAL REVIEW E, 84, 6, 062903 PHYSICAL REVIEW E, 84, 6, 062903 PHYSICAL REVIEW E, 84, 6, 062903 2011/12 Refereed English Research paper(scientific journal) Disclose to all
Takashi Satoh, Osamu Takeuchi, Alexis Vandenbon, Koubun Yasuda, Yoshiaki Tanaka, Yutaro Kumagai, Tohru Miyake, Kazufumi Matsushita, Toshihiko Okazaki, Tatsuya Saitoh, Kiri Honma, Toshifumi Matsuyama, Katsuyuki Yui, Tohru Tsujimura, Daron M. Standley, Kenji Nakanishi, Kenta Nakai, Shizuo Akira Takashi Satoh, Osamu Takeuchi, Alexis Vandenbon, Koubun Yasuda, Yoshiaki Tanaka, Yutaro Kumagai, Tohru Miyake, Kazufumi Matsushita, Toshihiko Okazaki, Tatsuya Saitoh, Kiri Honma, Toshifumi Matsuyama, Katsuyuki Yui, Tohru Tsujimura, Daron M. Standley, Kenji Nakanishi, Kenta Nakai, Shizuo Akira Takashi Satoh, Osamu Takeuchi, Alexis Vandenbon, Koubun Yasuda, Yoshiaki Tanaka, Yutaro Kumagai, Tohru Miyake, Kazufumi Matsushita, Toshihiko Okazaki, Tatsuya Saitoh, Kiri Honma, Toshifumi Matsuyama, Katsuyuki Yui, Tohru Tsujimura, Daron M. Standley, Kenji Nakanishi, Kenta Nakai, Shizuo Akira The Jmjd3-Irf4 axis regulates M2 macrophage polarization and host responses against helminth infection The Jmjd3-Irf4 axis regulates M2 macrophage polarization and host responses against helminth infection The Jmjd3-Irf4 axis regulates M2 macrophage polarization and host responses against helminth infection NATURE IMMUNOLOGY, 11, 10, 936-U89 NATURE IMMUNOLOGY, 11, 10, 936-U89 NATURE IMMUNOLOGY, 11, 10, 936-U89 2010/10 Refereed English Research paper(scientific journal) Disclose to all
Tohru Miyake, Takashi Satoh, Hiroki Kato, Kazufumi Matsushita, Yutaro Kumagai, Alexis Vandenbon, Tohru Tani, Tatsushi Muta, Shizuo Akira, Osamu Takeuchi Miyake T, Satoh T, Kato H, Matsushita K, Kumagai Y, Vandenbon A, Tani T, Muta T, Akira S, Takeuchi O Tohru Miyake, Takashi Satoh, Hiroki Kato, Kazufumi Matsushita, Yutaro Kumagai, Alexis Vandenbon, Tohru Tani, Tatsushi Muta, Shizuo Akira, Osamu Takeuchi I kappa B zeta is essential for natural killer cell activation in response to IL-12 and IL-18 IκBζ is essential for natural killer cell activation in response to IL-12 and IL-18. I kappa B zeta is essential for natural killer cell activation in response to IL-12 and IL-18 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 107, 41, 17680-17685 Proceedings of the National Academy of Sciences of the United States of America, 107, 41, 17680-17685 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 107, 41, 17680-17685 2010/10 Refereed English Research paper(scientific journal) Disclose to all
Alexis Vandenbon, Kenta Nakai Alexis Vandenbon, Kenta Nakai Alexis Vandenbon, Kenta Nakai Modeling tissue-specific structural patterns in human and mouse promoters Modeling tissue-specific structural patterns in human and mouse promoters Modeling tissue-specific structural patterns in human and mouse promoters NUCLEIC ACIDS RESEARCH, 38, 1, 17-25 NUCLEIC ACIDS RESEARCH, 38, 1, 17-25 NUCLEIC ACIDS RESEARCH, 38, 1, 17-25 2010/01 Refereed English Research paper(scientific journal) Disclose to all
Alexis Vandenbon, Yuki Miyamoto, Noriko Takimoto, Takehiro Kusakabe, Kenta Nakai Alexis Vandenbon, Yuki Miyamoto, Noriko Takimoto, Takehiro Kusakabe, Kenta Nakai Alexis Vandenbon, Yuki Miyamoto, Noriko Takimoto, Takehiro Kusakabe, Kenta Nakai Markov chain-based promoter structure modeling for tissue-specific expression pattern prediction Markov chain-based promoter structure modeling for tissue-specific expression pattern prediction Markov chain-based promoter structure modeling for tissue-specific expression pattern prediction DNA RESEARCH, 15, 1, 3-11 DNA RESEARCH, 15, 1, 3-11 DNA RESEARCH, 15, 1, 3-11 2008/02 Refereed English Research paper(scientific journal) Disclose to all
Alexis Vandenbon, Kenta Nakai Alexis Vandenbon, Kenta Nakai Alexis Vandenbon, Kenta Nakai USING SIMPLE RULES ON PRESENCE AND POSITIONING OF MOTIFS FOR PROMOTER STRUCTURE MODELING AND TISSUE-SPECIFIC EXPRESSION PREDICTION USING SIMPLE RULES ON PRESENCE AND POSITIONING OF MOTIFS FOR PROMOTER STRUCTURE MODELING AND TISSUE-SPECIFIC EXPRESSION PREDICTION USING SIMPLE RULES ON PRESENCE AND POSITIONING OF MOTIFS FOR PROMOTER STRUCTURE MODELING AND TISSUE-SPECIFIC EXPRESSION PREDICTION GENOME INFORMATICS 2008, VOL 21, 21, 188-199 GENOME INFORMATICS 2008, VOL 21, 21, 188-199 GENOME INFORMATICS 2008, VOL 21, 21, 188-199 2008 Refereed English Research paper(international conference proceedings) Disclose to all

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Title language:
Misc
Author Author(Japanese) Author(English) Title Title(Japanese) Title(English) Bibliography Bibliography(Japanese) Bibliography(English) Publication date Refereed paper Language Publishing type Disclose
Michio Tomura, Ryoyo Ikebuchi, Shunsuke Teraguchi, Alexis Vandenbon, Shand H. W. Francis, Tetsuya Honda Michio Tomura, Ryoyo Ikebuchi, Shunsuke Teraguchi, Alexis Vandenbon, Shand H. W. Francis, Tetsuya Honda Michio Tomura, Ryoyo Ikebuchi, Shunsuke Teraguchi, Alexis Vandenbon, Shand H. W. Francis, Tetsuya Honda A rare subset of skin-tropic regulatory T cells expressing Il10/Gzmb inhibits the cutaneous immune response A rare subset of skin-tropic regulatory T cells expressing Il10/Gzmb inhibits the cutaneous immune response A rare subset of skin-tropic regulatory T cells expressing Il10/Gzmb inhibits the cutaneous immune response JOURNAL OF IMMUNOLOGY, 198, 1 JOURNAL OF IMMUNOLOGY, 198, 1 JOURNAL OF IMMUNOLOGY, 198, 1 2017/05 English Research paper, summary (international conference) Disclose to all
Title language:
Conference Activities & Talks
Title Title(Japanese) Title(English) Conference Conference(Japanese) Conference(English) Promotor Promotor(Japanese) Promotor(English) Date Language Assortment Disclose
singleCellHaystack: A clustering-independent method for predicting differentially expressed genes in single cell transcriptome data singleCellHaystack: A clustering-independent method for predicting differentially expressed genes in single cell transcriptome data singleCellHaystack: A clustering-independent method for predicting differentially expressed genes in single cell transcriptome data 1st International Symposium of CCII -Bioinformatics and its application to cancer and other diseases 1st International Symposium of CCII -Bioinformatics and its application to cancer and other diseases 1st International Symposium of CCII -Bioinformatics and its application to cancer and other diseases 2021/01/15 Disclose to all
singleCellHaystack: A clustering-independent method for predicting differentially expressed genes in single cell transcriptome data singleCellHaystack: A clustering-independent method for predicting differentially expressed genes in single cell transcriptome data singleCellHaystack: A clustering-independent method for predicting differentially expressed genes in single cell transcriptome data Human Cell Atlas Asia Meeting 2020 Human Cell Atlas Asia Meeting 2020 Human Cell Atlas Asia Meeting 2020 2020/10/22 Disclose to all
Prediction of regulatory mechanisms of gene expression at the epigenetic, transcriptional and post-transcriptional level[Invited] Prediction of regulatory mechanisms of gene expression at the epigenetic, transcriptional and post-transcriptional level [Invited] Prediction of regulatory mechanisms of gene expression at the epigenetic, transcriptional and post-transcriptional level [Invited] IIBMP2019 第8回生命医薬情報学連合大会 IIBMP2019 2019/09/10 English Oral presentation(invited, special) Disclose to all
singleCellHaystack, A clustering-independent method for predicting differentially expressed genes in single cell transcriptome data singleCellHaystack, A clustering-independent method for predicting differentially expressed genes in single cell transcriptome data singleCellHaystack, A clustering-independent method for predicting differentially expressed genes in single cell transcriptome data IIBMP2019 第8回生命医薬情報学連合大会 IIBMP2019 2019/09/10 English Oral presentation(general) Disclose to all
Navigating gene co-expression data in the immune system and finding interesting genes in single-cell haystacks[Invited] Navigating gene co-expression data in the immune system and finding interesting genes in single-cell haystacks [Invited] Navigating gene co-expression data in the immune system and finding interesting genes in single-cell haystacks [Invited] 2019/03/08 English Oral presentation(general) Disclose to all
Reconstructing biological networks using large-scale gene expression data Reconstructing biological networks using large-scale gene expression data Reconstructing biological networks using large-scale gene expression data Biological Information Symposium 第2回 生命情報研究会 Biological Information Symposium 2017/02/21 English Public discourse, seminar, tutorial, course, lecture and others Disclose to all
Waves of chromatin remodeling in mouse dendritic cells in response to lipopolysaccharide stimulation[Invited] Waves of chromatin remodeling in mouse dendritic cells in response to lipopolysaccharide stimulation [Invited] Waves of chromatin remodeling in mouse dendritic cells in response to lipopolysaccharide stimulation [Invited] The 54th Annual Meeting of the Biophysical Society of Japan 第54回日本生物物理学会年会 The 54th Annual Meeting of the Biophysical Society of Japan 2016/11/24 English Oral presentation(general) Disclose to all
Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system IIBMP2016 第5回生命医薬情報学連合大会 IIBMP2016 2016/09/30 English Oral presentation(general) Disclose to all
Analysing cell type-specific gene networks using Immuno-Navigator Analysing cell type-specific gene networks using Immuno-Navigator Analysing cell type-specific gene networks using Immuno-Navigator InCoB2016 InCoB2016 InCoB2016 2016/09/21 English Oral presentation(general) Disclose to all
Dynamics of enhancers in myeloid antigen presenting cells upon LPS stimulation Dynamics of enhancers in myeloid antigen presenting cells upon LPS stimulation Dynamics of enhancers in myeloid antigen presenting cells upon LPS stimulation GIW ISCB-ASIA 2014 GIW ISCB-ASIA 2014 GIW ISCB-ASIA 2014 2014/12/17 English Oral presentation(general) Disclose to all
A novel unbiased measure for motif co-occurrence predicts combinatorial regulation of transcription A novel unbiased measure for motif co-occurrence predicts combinatorial regulation of transcription A novel unbiased measure for motif co-occurrence predicts combinatorial regulation of transcription InCoB2012 InCoB2012 InCoB2012 2012/10/05 English Oral presentation(general) Disclose to all
Modeling the structures of promoters of virus-induced genes Modeling the structures of promoters of virus-induced genes Modeling the structures of promoters of virus-induced genes Bioinformatics in Immunology workshop Bioinformatics in Immunology workshop Bioinformatics in Immunology workshop 2009/11/06 English Symposium workshop panel(nominated) Disclose to all
Towards a More Complex Grammar for Promoter Architecture Models Towards a More Complex Grammar for Promoter Architecture Models Towards a More Complex Grammar for Promoter Architecture Models JSBi 2008 JSBi 2008 JSBi 2008 2008/12/16 English Oral presentation(general) Disclose to all
Using Simple Rules on Presence and Positioning of Motifs for Promoter Structure Modeling and Tissue-specific Expression Prediction Using Simple Rules on Presence and Positioning of Motifs for Promoter Structure Modeling and Tissue-specific Expression Prediction Using Simple Rules on Presence and Positioning of Motifs for Promoter Structure Modeling and Tissue-specific Expression Prediction GIW 2008 GIW 2008 GIW 2008 2008/12/03 English Oral presentation(general) Disclose to all
Markov Chain-based Promoter Structure Modeling Markov Chain-based Promoter Structure Modeling Markov Chain-based Promoter Structure Modeling ISMB/ECCB 2007 ISMB/ECCB 2007 ISMB/ECCB 2007 2007/07/25 English Oral presentation(general) Disclose to all

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Title language:
Awards
Title(Japanese) Title(English) Organization name(Japanese) Organization name(English) Date
Oxford Journals - Japanese Society for Bioinformatics Prize Oxford Journals - Japanese Society for Bioinformatics Prize 日本バイオインフォマティクス学会 Japanese Society for Bioinformatics 2019/09/10
External funds: competitive funds and Grants-in-Aid for Scientific Research (Kakenhi)
Type Position Title(Japanese) Title(English) Period
科学研究費補助金 Representative 免疫応答の制御に関与するプロモータの網羅的な構造特徴の抽出とモデル化 Comprehensive feature extraction and modeling of promoters controlling the immune response 2011/04/01-2012/03/31
科学研究費補助金 Representative Comprehensive optimization of cell type-specific gene co-expression networks and construction of a cell type-specific co-expression database 2020/04/01-2020/03/31
基盤研究(C) Representative Comprehensive optimization of cell type-specific gene co-expression networks and construction of a cell type-specific co-expression database (2020年度分) 2020/04/01-2021/03/31
Teaching subject(s)
Name(Japanese) Name(English) Term Department Period
Basic Data Analysis-E2 Basic Data Analysis-E2 前期 全学共通科目 2018/04-2019/03
ILAS Seminar-E2 ILAS Seminar-E2 前期 全学共通科目 2018/04-2019/03
ILAS Seminar-E2 ILAS Seminar-E2 後期 全学共通科目 2018/04-2019/03
Introductory Statistics-E2 Introductory Statistics-E2 後期 全学共通科目 2018/04-2019/03
Basic Data Analysis-E2 Basic Data Analysis-E2 前期 全学共通科目 2019/04-2020/03
ILAS Seminar-E2 ILAS Seminar-E2 前期 全学共通科目 2019/04-2020/03
ILAS Seminar-E2 ILAS Seminar-E2 後期 全学共通科目 2019/04-2020/03
Introductory Statistics-E2 Introductory Statistics-E2 後期 全学共通科目 2019/04-2020/03
Basic Data Analysis-E2 Basic Data Analysis-E2 前期 全学共通科目 2020/04-2021/03
ILAS Seminar-E2:Introductory Bioinformatics(バイオイ… ILAS Seminar-E2 :Introductory Bioinformatics 後期 全学共通科目 2020/04-2021/03
ILAS Seminar-E2:Programming for data analysis(データ… ILAS Seminar-E2 :Programming for data analysis 前期 全学共通科目 2020/04-2021/03
Introductory Statistics-E2 Introductory Statistics-E2 後期 全学共通科目 2020/04-2021/03
Basic Data Analysis-E2 Basic Data Analysis-E2 前期 全学共通科目 2021/04-2022/03
ILAS Seminar-E2:Introductory Bioinformatics(バイオイ… ILAS Seminar-E2 :Introductory Bioinformatics 後期 全学共通科目 2021/04-2022/03
ILAS Seminar-E2:Programming for data analysis(データ… ILAS Seminar-E2 :Programming for data analysis 前期 全学共通科目 2021/04-2022/03
Introductory Statistics-E2 Introductory Statistics-E2 後期 全学共通科目 2021/04-2022/03

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