奥田 綾

Last Update: 2021/06/01 14:32:53

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Name(Kanji/Kana/Abecedarium Latinum)
奥田 綾/オクダ アヤ/Okuda, Aya
Primary Affiliation(Org1/Job title)
Institute for Integrated Radiation and Nuclear Science (KURNS)/Assistant Professor
Academic Organizations You are Affiliated to in Japan
Organization name(Japanese) Organization name(English)
日本農芸化学会 The Japan Society for Bioscience, Biotechnology, and Agrochemistry
日本生化学会 The Japanese Biochemical Society
日本蛋白質科学会 Protein Science Society of Japan
日本中性子科学会 The Japanese Society for Neutron Science
Academic Degree
Field(Japanese) Field(English) University(Japanese) University(English) Method
修士(農学) 京都大学 Kyoto University
博士(農学) 京都大学 Kyoto University
Academic Resume (Graduate Schools)
University(Japanese) University(English) Faculty(Japanese) Faculty(English) Major(Japanese) Major(English) Completion Status
京都大学 Kyoto University 大学院農学研究科修士課程農学専攻 Graduate School of Agriculture 修了
京都大学 Kyoto University 大学院農学研究科博士後期課程農学専攻 Graduate School of Agriculture 修了
Academic Resume (Undergraduate School/Majors)
University(Japanese) University(English) Faculty(Japanese) Faculty(English) Major(s)(Japanese) Major(s)(English) Completion Status
京都大学 Kyoto University 農学部資源生物科学科 Faculty of Agriculture Department of Bioresource Science 卒業
High School
Highschool Kana
私立奈良学園高等学校
Work Experience
Period Organization(Japanese) Organization(English) Job title(Japanese) Job title(English)
2019/04/01-2021/01/31 京都大学 複合原子力科学研究所 Kyoto University, Institute for Integrated Radiation and Nuclear Science 研究員 Researcher
2018/04/01-2019/03/31 京都大学 大学院農学研究科 Kyoto University, Graduate School of Agriculture 特定助教 Assistant Professor
2016/04/01-2018/03/31 日本学術振興会 Japan Society for the Promotion of Science 特別研究員 Research Fellow
Personal Profile
(Japanese)
分子生物学および生化学的手法と物理学的手法を融合し、生体高分子であるタンパク質の機能と動的構造を解明する研究を進めている。特に酸化還元反応およびフォールディング反応を司るマルチドメインタンパク質に興味関心を持っている。 また、ダイズ種子貯蔵タンパク質にも着目し、その物性と構造に関する研究も進めている。
ORCID ID
https://orcid.org/0000-0002-6222-8364
researchmap URL
https://researchmap.jp/7000023061
Research Topics
(Japanese)
酸化的フォールディング酵素PDIファミリータンパク質の分子ダイナミクス解析
Overview of the research
(Japanese)
タンパク質の酸化的フォールディングを担う酵素群であるPDIファミリータンパク質の機能と構造ダイナミクスの相関関係を、X線および中性子の小角散乱解析をはじめとした物理学的手法により明らかにする。
Fields of research (key words)
Key words(Japanese) Key words(English)
農芸化学 Agricultural chemistry
生化学 Biochemistry
タンパク質フォールディング Protein folding
Published Papers
Author Author(Japanese) Author(English) Title Title(Japanese) Title(English) Bibliography Bibliography(Japanese) Bibliography(English) Publication date Refereed paper Language Publishing type Disclose
Aya Okuda, Masahiro Shimizu, Ken Morishima, Rintaro Inoue, Nobuhiro Sato, Reiko Urade, Masaaki Sugiyama Aya Okuda, Masahiro Shimizu, Ken Morishima, Rintaro Inoue, Nobuhiro Sato, Reiko Urade, Masaaki Sugiyama Aya Okuda, Masahiro Shimizu, Ken Morishima, Rintaro Inoue, Nobuhiro Sato, Reiko Urade, Masaaki Sugiyama Solution structure of multi-domain protein ER-60 studied by aggregation-free SAXS and coarse-grained-MD simulation. Solution structure of multi-domain protein ER-60 studied by aggregation-free SAXS and coarse-grained-MD simulation. Solution structure of multi-domain protein ER-60 studied by aggregation-free SAXS and coarse-grained-MD simulation. Scientific reports, 11, 1, 5655-5655 Scientific reports, 11, 1, 5655-5655 Scientific reports, 11, 1, 5655-5655 2021/03/11 Refereed English Research paper(scientific journal) Disclose to all
Rina Hirano, Yasuhiro Arimura, Tomoya Kujirai, Mikihiro Shibata, Aya Okuda, Ken Morishima, Rintaro Inoue, Masaaki Sugiyama, Hitoshi Kurumizaka Rina Hirano, Yasuhiro Arimura, Tomoya Kujirai, Mikihiro Shibata, Aya Okuda, Ken Morishima, Rintaro Inoue, Masaaki Sugiyama, Hitoshi Kurumizaka Rina Hirano, Yasuhiro Arimura, Tomoya Kujirai, Mikihiro Shibata, Aya Okuda, Ken Morishima, Rintaro Inoue, Masaaki Sugiyama, Hitoshi Kurumizaka Histone variant H2A.B-H2B dimers are spontaneously exchanged with canonical H2A-H2B in the nucleosome. Histone variant H2A.B-H2B dimers are spontaneously exchanged with canonical H2A-H2B in the nucleosome. Histone variant H2A.B-H2B dimers are spontaneously exchanged with canonical H2A-H2B in the nucleosome. Communications biology, 4, 1, 191-191 Communications biology, 4, 1, 191-191 Communications biology, 4, 1, 191-191 2021/02/12 Refereed English Research paper(scientific journal) Disclose to all
Rintaro Inoue, Yusuke Sakamaki, Takumi Takata, Kathleen Wood, Ken Morishima, Nobuhiro Sato, Aya Okuda, Masahiro Shimizu, Reiko Urade, Noriko Fujii, Masaaki Sugiyama Rintaro Inoue, Yusuke Sakamaki, Takumi Takata, Kathleen Wood, Ken Morishima, Nobuhiro Sato, Aya Okuda, Masahiro Shimizu, Reiko Urade, Noriko Fujii, Masaaki Sugiyama Rintaro Inoue, Yusuke Sakamaki, Takumi Takata, Kathleen Wood, Ken Morishima, Nobuhiro Sato, Aya Okuda, Masahiro Shimizu, Reiko Urade, Noriko Fujii, Masaaki Sugiyama Elucidation of the mechanism of subunit exchange in αB crystallin oligomers. Elucidation of the mechanism of subunit exchange in αB crystallin oligomers. Elucidation of the mechanism of subunit exchange in αB crystallin oligomers. Scientific reports, 11, 1, 2555-2555 Scientific reports, 11, 1, 2555-2555 Scientific reports, 11, 1, 2555-2555 2021/01/28 Refereed English Research paper(scientific journal) Disclose to all
Aya Okuda, Rintaro Inoue, Ken Morishima, Tomohide Saio, Yasuhiro Yunoki, Maho Yagi-Utsumi, Hirokazu Yagi, Masahiro Shimizu, Nobuhiro Sato, Reiko Urade, Koichi Kato, Masaaki Sugiyama Aya Okuda, Rintaro Inoue, Ken Morishima, Tomohide Saio, Yasuhiro Yunoki, Maho Yagi-Utsumi, Hirokazu Yagi, Masahiro Shimizu, Nobuhiro Sato, Reiko Urade, Koichi Kato, Masaaki Sugiyama Aya Okuda, Rintaro Inoue, Ken Morishima, Tomohide Saio, Yasuhiro Yunoki, Maho Yagi-Utsumi, Hirokazu Yagi, Masahiro Shimizu, Nobuhiro Sato, Reiko Urade, Koichi Kato, Masaaki Sugiyama Deuteration Aiming for Neutron Scattering Deuteration Aiming for Neutron Scattering Deuteration Aiming for Neutron Scattering Biophysics and Physicobiology, 18, 0, 16-27 Biophysics and Physicobiology, 18, 0, 16-27 Biophysics and Physicobiology, 18, 0, 16-27 2021 Refereed Research paper(scientific journal) Disclose to all
Rintaro Inoue, Takashi Oda, Hiroshi Nakagawa, Taiki Tominaga, Tomohide Saio, Yukinobu Kawakita, Masahiro Shimizu, Aya Okuda, Ken Morishima, Nobuhiro Sato, Reiko Urade, Mamoru Sato, Masaaki Sugiyama Rintaro Inoue, Takashi Oda, Hiroshi Nakagawa, Taiki Tominaga, Tomohide Saio, Yukinobu Kawakita, Masahiro Shimizu, Aya Okuda, Ken Morishima, Nobuhiro Sato, Reiko Urade, Mamoru Sato, Masaaki Sugiyama Rintaro Inoue, Takashi Oda, Hiroshi Nakagawa, Taiki Tominaga, Tomohide Saio, Yukinobu Kawakita, Masahiro Shimizu, Aya Okuda, Ken Morishima, Nobuhiro Sato, Reiko Urade, Mamoru Sato, Masaaki Sugiyama Dynamics of proteins with different molecular structures under solution condition. Dynamics of proteins with different molecular structures under solution condition. Dynamics of proteins with different molecular structures under solution condition. Scientific reports, 10, 1, 21678-21678 Scientific reports, 10, 1, 21678-21678 Scientific reports, 10, 1, 21678-21678 2020/12/10 Refereed English Research paper(scientific journal) Disclose to all
Aya Okuda, Motonori Matsusaki, Taro Masuda, Ken Morishima, Nobuhiro Sato, Rintaro Inoue, Masaaki Sugiyama, Reiko Urade Aya Okuda, Motonori Matsusaki, Taro Masuda, Ken Morishima, Nobuhiro Sato, Rintaro Inoue, Masaaki Sugiyama, Reiko Urade Aya Okuda, Motonori Matsusaki, Taro Masuda, Ken Morishima, Nobuhiro Sato, Rintaro Inoue, Masaaki Sugiyama, Reiko Urade A novel soybean protein disulphide isomerase family protein possesses dithiol oxidation activity: identification and characterization of GmPDIL6. A novel soybean protein disulphide isomerase family protein possesses dithiol oxidation activity: identification and characterization of GmPDIL6. A novel soybean protein disulphide isomerase family protein possesses dithiol oxidation activity: identification and characterization of GmPDIL6. Journal of biochemistry, 168, 4, 393-405 Journal of biochemistry, 168, 4, 393-405 Journal of biochemistry, 168, 4, 393-405 2020/10/01 Refereed English Research paper(scientific journal) Disclose to all
Ken Morishima, Aya Okuda, Rintaro Inoue, Nobuhiro Sato, Yosuke Miyamoto, Reiko Urade, Maho Yagi-Utsumi, Koichi Kato, Rina Hirano, Tomoya Kujirai, Hitoshi Kurumizaka, Masaaki Sugiyama Ken Morishima, Aya Okuda, Rintaro Inoue, Nobuhiro Sato, Yosuke Miyamoto, Reiko Urade, Maho Yagi-Utsumi, Koichi Kato, Rina Hirano, Tomoya Kujirai, Hitoshi Kurumizaka, Masaaki Sugiyama Ken Morishima, Aya Okuda, Rintaro Inoue, Nobuhiro Sato, Yosuke Miyamoto, Reiko Urade, Maho Yagi-Utsumi, Koichi Kato, Rina Hirano, Tomoya Kujirai, Hitoshi Kurumizaka, Masaaki Sugiyama Integral approach to biomacromolecular structure by analytical-ultracentrifugation and small-angle scattering. Integral approach to biomacromolecular structure by analytical-ultracentrifugation and small-angle scattering. Integral approach to biomacromolecular structure by analytical-ultracentrifugation and small-angle scattering. Communications biology, 3, 1, 294-294 Communications biology, 3, 1, 294-294 Communications biology, 3, 1, 294-294 2020/06/08 Refereed English Research paper(scientific journal) Disclose to all
Matsusaki M, Okuda A, Matsuo K, Gekko K, Masuda T, Naruo Y, Hirose A, Kono K, Tsuchi Y, Urade R Matsusaki M, Okuda A, Matsuo K, Gekko K, Masuda T, Naruo Y, Hirose A, Kono K, Tsuchi Y, Urade R Matsusaki M, Okuda A, Matsuo K, Gekko K, Masuda T, Naruo Y, Hirose A, Kono K, Tsuchi Y, Urade R Regulation of plant ER oxidoreductin 1 (ERO1) activity for efficient oxidative protein folding Regulation of plant ER oxidoreductin 1 (ERO1) activity for efficient oxidative protein folding Regulation of plant ER oxidoreductin 1 (ERO1) activity for efficient oxidative protein folding Journal of Biological Chemistry, 294, 49, 18820-18835 Journal of Biological Chemistry, 294, 49, 18820-18835 Journal of Biological Chemistry, 294, 49, 18820-18835 2019/11 Refereed English Research paper(scientific journal) Disclose to all
Inoue R, Nakagawa T, Morishima K, Sato N, Okuda A, Urade R, Yogo R, Yanaka S, Yagi-Utsumi M, Kato K, Omoto K, Ito K, Sugiyama M Inoue R, Nakagawa T, Morishima K, Sato N, Okuda A, Urade R, Yogo R, Yanaka S, Yagi-Utsumi M, Kato K, Omoto K, Ito K, Sugiyama M Inoue R, Nakagawa T, Morishima K, Sato N, Okuda A, Urade R, Yogo R, Yanaka S, Yagi-Utsumi M, Kato K, Omoto K, Ito K, Sugiyama M Newly developed Laboratory-based Size exclusion chromatography Small-angle x-ray scattering System (La-SSS). Newly developed Laboratory-based Size exclusion chromatography Small-angle x-ray scattering System (La-SSS). Newly developed Laboratory-based Size exclusion chromatography Small-angle x-ray scattering System (La-SSS). Scientific reports, 9, 1, 12610 Scientific reports, 9, 1, 12610 Scientific reports, 9, 1, 12610 2019 Refereed Disclose to all
Aya Okuda, Motonori Matsusaki, Taro Masuda, Reiko Urade Aya Okuda, Motonori Matsusaki, Taro Masuda, Reiko Urade Aya Okuda, Motonori Matsusaki, Taro Masuda, Reiko Urade Identification and characterization of GmPDIL7, a soybean ER membrane-bound protein disulfide isomerase family protein Identification and characterization of GmPDIL7, a soybean ER membrane-bound protein disulfide isomerase family protein Identification and characterization of GmPDIL7, a soybean ER membrane-bound protein disulfide isomerase family protein FEBS JOURNAL, 284, 3, 414-428 FEBS JOURNAL, 284, 3, 414-428 FEBS JOURNAL, 284, 3, 414-428 2017/02 Refereed English Research paper(scientific journal) Disclose to all
Motonori Matsusaki, Aya Okuda, Taro Masuda, Katsunori Koishihara, Ryuta Mita, Kensuke Iwasaki, Kumiko Hara, Yurika Naruo, Akiho Hirose, Yuichiro Tsuchi, Reiko Urade Motonori Matsusaki, Aya Okuda, Taro Masuda, Katsunori Koishihara, Ryuta Mita, Kensuke Iwasaki, Kumiko Hara, Yurika Naruo, Akiho Hirose, Yuichiro Tsuchi, Reiko Urade Motonori Matsusaki, Aya Okuda, Taro Masuda, Katsunori Koishihara, Ryuta Mita, Kensuke Iwasaki, Kumiko Hara, Yurika Naruo, Akiho Hirose, Yuichiro Tsuchi, Reiko Urade Cooperative Protein Folding by Two Protein Thiol Disulfide Oxidoreductases and ERO1 in Soybean Cooperative Protein Folding by Two Protein Thiol Disulfide Oxidoreductases and ERO1 in Soybean Cooperative Protein Folding by Two Protein Thiol Disulfide Oxidoreductases and ERO1 in Soybean PLANT PHYSIOLOGY, 170, 2, 774-789 PLANT PHYSIOLOGY, 170, 2, 774-789 PLANT PHYSIOLOGY, 170, 2, 774-789 2016/02 Refereed English Research paper(scientific journal) Disclose to all
Aya Okuda, Motonori Matsusaki, Yuki Higashino, Taro Masuda, Reiko Urade Aya Okuda, Motonori Matsusaki, Yuki Higashino, Taro Masuda, Reiko Urade Aya Okuda, Motonori Matsusaki, Yuki Higashino, Taro Masuda, Reiko Urade Disulfide bond formation activity of soybean quiescin sulfhydryl oxidase Disulfide bond formation activity of soybean quiescin sulfhydryl oxidase Disulfide bond formation activity of soybean quiescin sulfhydryl oxidase FEBS JOURNAL, 281, 23, 5341-5355 FEBS JOURNAL, 281, 23, 5341-5355 FEBS JOURNAL, 281, 23, 5341-5355 2014/12 Refereed English Research paper(scientific journal) Disclose to all

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