Brown John

Last Update: 2019/06/10 12:33:42

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Name(Kanji/Kana/Abecedarium Latinum)
Brown John/ブラウン ジョン/Brown, John
Primary Affiliation(Org1/Job title)
Graduate Schools Medicine/Senior Lecturer/ Junior Associate Professor
Faculty
Org1 Job title
医学部
Institute for Liberal Arts and Sciences (ILAS)
Contact Address
Type Address(Japanese) Address(English)
Office 京都市左京区吉田近衛町E棟109号室 Yoshida Konoe-cho Building E,Sakyo-ku Kyoto 606-8501 Japan
Academic Organizations You are Affiliated to in Japan
Organization name(Japanese) Organization name(English)
日本バイオインフォマティクス学会 Japanese Society for Bioinformatics
公益社団法人日本化学会情報化学部会 Chemical Society of Japan
Academic Organizations Overaseas You are Affiliated to
Organization name Country
Global Alliance 4 Genomics and Health (GA4GH) USA
Academic Degree
Field(Japanese) Field(English) University(Japanese) University(English) Method
修士(情報学) 京都大学
博士(情報学) 京都大学
Graduate School
University(Japanese) University(English) Faculty(Japanese) Faculty(English) Major(Japanese) Major(English) Degree
京都大学 Kyoto University 大学院情報学研究科修士課程知能情報学専攻 Graduate School of Informatics 修了
京都大学 Kyoto University 大学院情報学研究科博士後期課程知能情報学専攻 Graduate School of Informatics 修了
Undergraduate School / Major(s)
University(Japanese) University(English) Faculty(Japanese) Faculty(English) Major(s)(Japanese) Major(s)(English) Degree
Evansville大学 University of Evansville 工学計算機科学部計算機科学学科及び文系理系学部数学学科 卒業
High School
Highschool Kana
North Garland高校
Work Experience
Period Organization(Japanese) Organization(English) Job title(Japanese) Job title(English)
2003/06-2003/10 アメリカ国立保健衛生研究所(NIH) Diagnostic Radiology, National Institutes of Health, USA 研究補佐員 Internship
2010/04/01-2010/08/31 京都大学生命科学キャリアパス形成ユニット蛋白質理論科学生物物理講座 Kyoto University, Career Path Promotion Unit for Young Life Scientists, Laboratory of Theoretical Chemistry and Biophysics for Molecules 研究補佐員 Postdoctoral researcher
2010/09/01-2014/03/31 京都大学大学院薬学研究科システム創薬科学講座 Kyoto University, Graduate School of Pharmaceutical Sciences, Department of Systems Bioscience for Drug Discovery 博士研究員 Postdoctoral researcher
2014/04/01-2015/09/30 京都大学大学院医学研究科臨床システム腫瘍学講座 Kyoto University, Graduate School of Medicine, Department of Clinical System Onco-Informatics 特定助教 Assistant Professor
2014/04/01-2016/03/31 公益財団法人先端医療振興財団先端医療センター研究所 Foundation for Biomedical Research and Innovation, Institute of Biomedical Research and Innovation Laboratory, Drug Research and Development Division, Simulation Drug Discovery Group 共同研究者 Adjoint researcher
2015/10/01- 京都大学大学院医学研究科医学教育・国際化推進センター Kyoto University, Graduate School of Medicine, Center for Medical Education 講師 Senior Lecturer
Personal Website(s) (URL(s))
URL
http://statlsi.med.kyoto-u.ac.jp/jbbrown
researchmap URL
https://researchmap.jp/7000009012
Research Topics
(Japanese)
計算創薬、バイオインフォマティクス、薬学遺伝学、医療情報解析
(English)
Computational drug discovery, bioinformatics, pharmacogenomics, medical informatics
Overview of the research
(Japanese)
トランスレーショナル生命情報科学。解釈性及び具体的な行動につながる計算方法を重視。
(English)
Translational life science informatics, with an emphasis on computational methods that lead to actionable outcome and are interpretable.
Fields of research (key words)
Key words(Japanese) Key words(English)
Pharmacogenomics,Life-science informatics (including bioinformatics/chemoinformatics),Biological networks,Machine learning,Large-scale software framework/architecture design,Scientif data visualization methods,Medical informatics,DNA Damage and DNA Repair
Published Papers
Author Author(Japanese) Author(English) Title Title(Japanese) Title(English) Bibliography Bibliography(Japanese) Bibliography(English) Publication date Refereed paper Language Publishing type Disclose
Erik Gawehn, Jan Hiss, J.B. Brown, Gisbert Schneider Erik Gawehn, Jan Hiss, J.B. Brown, Gisbert Schneider Erik Gawehn, Jan Hiss, J.B. Brown, Gisbert Schneider Advancing drug discovery via GPU-based deep learning Advancing drug discovery via GPU-based deep learning Advancing drug discovery via GPU-based deep learning Expert Opinion in Drug Discovery, in press Expert Opinion in Drug Discovery, in press Expert Opinion in Drug Discovery, in press 2018/04 Refereed English Disclose to all
Akihide Takeuchi, Kei Iida, Toshiaki Tsubota, Motoyasu Hosokawa, Masatsugu Denawa, J.B. Brown, Kensuke Ninomiya, Mikako Ito, Hiroshi Kimura, Takaya Abe, Hiroshi Kiyonari, Kinji Ohno, Masatoshi Hagiwara Akihide Takeuchi, Kei Iida, Toshiaki Tsubota, Motoyasu Hosokawa, Masatsugu Denawa, J.B. Brown, Kensuke Ninomiya, Mikako Ito, Hiroshi Kimura, Takaya Abe, Hiroshi Kiyonari, Kinji Ohno, Masatoshi Hagiwara Loss of Sfpq Causes Long-Gene Transcriptopathy in the Brain Loss of Sfpq Causes Long-Gene Transcriptopathy in the Brain Loss of Sfpq Causes Long-Gene Transcriptopathy in the Brain Cell Reports, in press Cell Reports, in press Cell Reports, in press 2018/03 Refereed English Disclose to all
John Brown BROWNⅢ,John Ellsworth John Brown Classifiers and their metrics quantified Classifiers and their metrics quantified Classifiers and their metrics quantified Molecular Informatics, 37, 1-2, 1700127 Molecular Informatics, 37, 1-2, 1700127 Molecular Informatics, 37, 1-2, 1700127 2018/01 Refereed English Disclose to all
Christin Rakers*, Rifat Ara Najnin, Ahsan Habib Polash, Shunichi Takeda, J.B. Brown Christin Rakers*, Rifat Ara Najnin, Ahsan Habib Polash, Shunichi Takeda, J.B. Brown Christin Rakers*, Rifat Ara Najnin, Ahsan Habib Polash, Shunichi Takeda, J.B. Brown Chemogenomic active learning's domain of applicability on small, sparse qHTS matrices: a study using CYP450 and nuclear hormone receptor families Chemogenomic active learning's domain of applicability on small, sparse qHTS matrices: a study using CYP450 and nuclear hormone receptor families Chemogenomic active learning's domain of applicability on small, sparse qHTS matrices: a study using CYP450 and nuclear hormone receptor families ChemMedChem, 13, 6, 511-521 ChemMedChem, 13, 6, 511-521 ChemMedChem, 13, 6, 511-521 2018 Refereed English Disclose to all
John Brown BROWNⅢ,John Ellsworth John Brown Adaptive mining and model building of medicinal chemistry data with a multi-metric perspective Adaptive mining and model building of medicinal chemistry data with a multi-metric perspective Adaptive mining and model building of medicinal chemistry data with a multi-metric perspective Future Medicinal Chemistry, in press Future Medicinal Chemistry, in press Future Medicinal Chemistry, in press 2018 Refereed English Disclose to all
Daniel Reker*, Petra Schneider, Gisbert Schneider, J.B. Brown Daniel Reker*, Petra Schneider, Gisbert Schneider, J.B. Brown Daniel Reker*, Petra Schneider, Gisbert Schneider, J.B. Brown Active learning for computational chemogenomics Active learning for computational chemogenomics Active learning for computational chemogenomics Future Medicinal Chemistry, 9, 4, 381-402 Future Medicinal Chemistry, 9, 4, 381-402 Future Medicinal Chemistry, 9, 4, 381-402 2017 Refereed English Disclose to all
Ryusuke Murakami, Noriomi Matsumura, J.B. Brown, Koichiro Higasa, Takanobu Tsutsumi, Mayumi Kamada, Hisham Abou-Taleb, Yuko Hosoe, Sachiko Kitamura, Ken Yamaguchi, Kaoru Abiko, Junzo Hamanishi, Tsukasa Baba, Masafumi Koshiyama, Yasushi Okuno, Ryo Yamada, Fumihiko Matsuda, Ikuo Konishi, Masaki Mandai Ryusuke Murakami, Noriomi Matsumura, J.B. Brown, Koichiro Higasa, Takanobu Tsutsumi, Mayumi Kamada, Hisham Abou-Taleb, Yuko Hosoe, Sachiko Kitamura, Ken Yamaguchi, Kaoru Abiko, Junzo Hamanishi, Tsukasa Baba, Masafumi Koshiyama, Yasushi Okuno, Ryo Yamada, Fumihiko Matsuda, Ikuo Konishi, Masaki Mandai Ryusuke Murakami, Noriomi Matsumura, J.B. Brown, Koichiro Higasa, Takanobu Tsutsumi, Mayumi Kamada, Hisham Abou-Taleb, Yuko Hosoe, Sachiko Kitamura, Ken Yamaguchi, Kaoru Abiko, Junzo Hamanishi, Tsukasa Baba, Masafumi Koshiyama, Yasushi Okuno, Ryo Yamada, Fumihiko Matsuda, Ikuo Konishi, Masaki Mandai Exome sequencing landscape analyses in ovarian clear cell carcinoma shed light on key chromosomal regions and mutation gene networks. Exome sequencing landscape analyses in ovarian clear cell carcinoma shed light on key chromosomal regions and mutation gene networks. Exome sequencing landscape analyses in ovarian clear cell carcinoma shed light on key chromosomal regions and mutation gene networks. American Journal of Pathology, 187, 10, 2246-2258 American Journal of Pathology, 187, 10, 2246-2258 American Journal of Pathology, 187, 10, 2246-2258 2017 Refereed English Disclose to all
Christin Rakers, Daniel Reker, J.B. Brown Christin Rakers, Daniel Reker, J.B. Brown Christin Rakers, Daniel Reker, J.B. Brown Small Random Forest Models for Effective Chemogenomic Active Learning Small Random Forest Models for Effective Chemogenomic Active Learning Small Random Forest Models for Effective Chemogenomic Active Learning Journal of Computer Aided Chemistry, 18, 124-142 Journal of Computer Aided Chemistry, 18, 124-142 Journal of Computer Aided Chemistry, 18, 124-142 2017 Refereed English Disclose to all
Ryusuke Murakami, Noriomi Matsumura, J.B. Brown, Zhipeng Wang, Ken Yamaguchi, Kaoru Abiko, Yumiko Yoshioka, Junzo Hamanishi, Tsukasa Baba, Masafumi Koshiyama, Masaki Mandai, Ryo Yamada, Ikuo Konishi Ryusuke Murakami, Noriomi Matsumura, J.B. Brown, Zhipeng Wang, Ken Yamaguchi, Kaoru Abiko, Yumiko Yoshioka, Junzo Hamanishi, Tsukasa Baba, Masafumi Koshiyama, Masaki Mandai, Ryo Yamada, Ikuo Konishi Ryusuke Murakami, Noriomi Matsumura, J.B. Brown, Zhipeng Wang, Ken Yamaguchi, Kaoru Abiko, Yumiko Yoshioka, Junzo Hamanishi, Tsukasa Baba, Masafumi Koshiyama, Masaki Mandai, Ryo Yamada, Ikuo Konishi Prediction of taxane and platinum sensitivity in ovarian cancer based on gene expression profiles Prediction of taxane and platinum sensitivity in ovarian cancer based on gene expression profiles Prediction of taxane and platinum sensitivity in ovarian cancer based on gene expression profiles Gyncecologic Oncology, 141-149 Gyncecologic Oncology, 141-149 Gyncecologic Oncology, 141-149 2016/02 Refereed English Disclose to all
Yoshitaka Nishikawa, Masashi Kanai, Maiko Narahara, Akiko Tamon, J.B. Brown, Kei Taneishi, Masahiko Nakatsui, Kazuya Okamoto, Yu Uneno, Daisuke Yamaguchi, Teruko Tomono, Yukiko Mori, Shigemi Matsumoto, Yasushi Okuno, and Manabu Muto Yoshitaka Nishikawa, Masashi Kanai, Maiko Narahara, Akiko Tamon, J.B. Brown, Kei Taneishi, Masahiko Nakatsui, Kazuya Okamoto, Yu Uneno, Daisuke Yamaguchi, Teruko Tomono, Yukiko Mori, Shigemi Matsumoto, Yasushi Okuno, and Manabu Muto Yoshitaka Nishikawa, Masashi Kanai, Maiko Narahara, Akiko Tamon, J.B. Brown, Kei Taneishi, Masahiko Nakatsui, Kazuya Okamoto, Yu Uneno, Daisuke Yamaguchi, Teruko Tomono, Yukiko Mori, Shigemi Matsumoto, Yasushi Okuno, and Manabu Muto Association between UGT1A1*28*28 genotype and lung cancer in the Japanese population Association between UGT1A1*28*28 genotype and lung cancer in the Japanese population Association between UGT1A1*28*28 genotype and lung cancer in the Japanese population International Journal of Clinical Oncology, 1-5 International Journal of Clinical Oncology, 1-5 International Journal of Clinical Oncology, 1-5 2016 Refereed Disclose to all
Goji Kimura, Kaori Kadoyama, J.B. Brown, Tsutomu Nakamura, Ikuya Miki, Kohshi Nisiguchi, Toshiyuki Sakaeda, and Yasushi Okuno Goji Kimura, Kaori Kadoyama, J.B. Brown, Tsutomu Nakamura, Ikuya Miki, Kohshi Nisiguchi, Toshiyuki Sakaeda, and Yasushi Okuno Goji Kimura, Kaori Kadoyama, J.B. Brown, Tsutomu Nakamura, Ikuya Miki, Kohshi Nisiguchi, Toshiyuki Sakaeda, and Yasushi Okuno Antipsychotics-Associated Serious Adverse Events in Children: An Analysis of the FAERS Database Antipsychotics-Associated Serious Adverse Events in Children: An Analysis of the FAERS Database Antipsychotics-Associated Serious Adverse Events in Children: An Analysis of the FAERS Database International Journal of Medical Sciences, 12, 135 International Journal of Medical Sciences, 12, 135 International Journal of Medical Sciences, 12, 135 2015 Refereed English Disclose to all
J.B. Brown, Yasushi Okuno, Gilles Marcou, Alexandre Varnek, Dragos Horvath J.B. Brown, Yasushi Okuno, Gilles Marcou, Alexandre Varnek, Dragos Horvath J.B. Brown, Yasushi Okuno, Gilles Marcou, Alexandre Varnek, Dragos Horvath Computational chemogenomics - is it more than inductive transfer? Computational chemogenomics - is it more than inductive transfer? Computational chemogenomics - is it more than inductive transfer? Journal of Computer-Aided Molecular Design, 28, 597 Journal of Computer-Aided Molecular Design, 28, 597 Journal of Computer-Aided Molecular Design, 28, 597 2014 Refereed English Disclose to all
J.B. Brown*, Masahiko Nakatsui*, Yasushi Okuno J.B. Brown*, Masahiko Nakatsui*, Yasushi Okuno J.B. Brown*, Masahiko Nakatsui*, Yasushi Okuno Constructing a foundational platform driven by Japan's K supercomputer for next-generation drug discovery Constructing a foundational platform driven by Japan's K supercomputer for next-generation drug discovery Constructing a foundational platform driven by Japan's K supercomputer for next-generation drug discovery Molecular Informatics, 33, 732 Molecular Informatics, 33, 732 Molecular Informatics, 33, 732 2014 Refereed English Disclose to all
Kaoru Kawasaki, Eiji Kondoh, Yoshitsugu Chigusa, Mari Ujita, Ryusuke Murakami, Haruta Mogami, J.B. Brown, Yasushi Okuno, Ikuo Konishi Kaoru Kawasaki, Eiji Kondoh, Yoshitsugu Chigusa, Mari Ujita, Ryusuke Murakami, Haruta Mogami, J.B. Brown, Yasushi Okuno, Ikuo Konishi Kaoru Kawasaki, Eiji Kondoh, Yoshitsugu Chigusa, Mari Ujita, Ryusuke Murakami, Haruta Mogami, J.B. Brown, Yasushi Okuno, Ikuo Konishi Reliable preeclampsia pathways based on multiple independent microarray data sets Reliable preeclampsia pathways based on multiple independent microarray data sets Reliable preeclampsia pathways based on multiple independent microarray data sets Molecular Human Reproduction, 21, 217 Molecular Human Reproduction, 21, 217 Molecular Human Reproduction, 21, 217 2014 Refereed English Disclose to all
Dragos Horvath, J.B. Brown, Gilles Marcou, Alexandre Varnek Dragos Horvath, J.B. Brown, Gilles Marcou, Alexandre Varnek Dragos Horvath, J.B. Brown, Gilles Marcou, Alexandre Varnek An Evolutionary Optimizer of libsvm Models An Evolutionary Optimizer of libsvm Models An Evolutionary Optimizer of libsvm Models Challenges, 5, 450 Challenges, 5, 450 Challenges, 5, 450 2014 Refereed English Disclose to all
A. Shiraishi; S. Niijima; J.B. Brown; M. Nakatsui; Y. Okuno A. Shiraishi; S. Niijima; J.B. Brown; M. Nakatsui; Y. Okuno A. Shiraishi; S. Niijima; J.B. Brown; M. Nakatsui; Y. Okuno Chemical genomics approach for GPCR-ligand interaction prediction and extraction of ligand binding determinants Chemical genomics approach for GPCR-ligand interaction prediction and extraction of ligand binding determinants Chemical genomics approach for GPCR-ligand interaction prediction and extraction of ligand binding determinants Journal of Chemical Information and Modeling, 53, 6, 1253-1262 Journal of Chemical Information and Modeling, 53, 6, 1253-1262 Journal of Chemical Information and Modeling, 53, 6, 1253-1262 2013 Refereed English Disclose to all
J.B. Brown, Satoshi Niijima, Yasushi Okuno J.B. Brown, Satoshi Niijima, Yasushi Okuno J.B. Brown, Satoshi Niijima, Yasushi Okuno Compound-protein interaction prediction within chemogenomics: theoretical concepts, practical usage, and future directions Compound-protein interaction prediction within chemogenomics: theoretical concepts, practical usage, and future directions Compound-protein interaction prediction within chemogenomics: theoretical concepts, practical usage, and future directions Molecular Informatics, 32, 906 Molecular Informatics, 32, 906 Molecular Informatics, 32, 906 2013 Refereed English Disclose to all
A. Shiraishi; S. Niijima; J.B. Brown; M. Nakatsui; Y. Okuno A. Shiraishi; S. Niijima; J.B. Brown; M. Nakatsui; Y. Okuno A. Shiraishi; S. Niijima; J.B. Brown; M. Nakatsui; Y. Okuno Chemical genomics approach for GPCR-ligand interaction prediction and extraction of ligand binding determinants Chemical genomics approach for GPCR-ligand interaction prediction and extraction of ligand binding determinants Chemical genomics approach for GPCR-ligand interaction prediction and extraction of ligand binding determinants Journal of Chemical Information and Modeling, 53, 6, 1253-1262 Journal of Chemical Information and Modeling, 53, 6, 1253-1262 Journal of Chemical Information and Modeling, 53, 6, 1253-1262 2013 Refereed English Disclose to all
J.B. Brown; Y. Okuno J.B. Brown; Y. Okuno J.B. Brown; Y. Okuno Systems biology and systems chemistry: New directions for drug discovery Systems biology and systems chemistry: New directions for drug discovery Systems biology and systems chemistry: New directions for drug discovery Chemistry and Biology, 19, 1, 23-28 Chemistry and Biology, 19, 1, 23-28 Chemistry and Biology, 19, 1, 23-28 2012 Refereed English Disclose to all
J.B. Brown; Y. Okuno J.B. Brown; Y. Okuno J.B. Brown; Y. Okuno Systems biology and systems chemistry: New directions for drug discovery Systems biology and systems chemistry: New directions for drug discovery Systems biology and systems chemistry: New directions for drug discovery Chemistry and Biology, 19, 1, 23-28 Chemistry and Biology, 19, 1, 23-28 Chemistry and Biology, 19, 1, 23-28 2012 Refereed English Disclose to all
J.B. Brown J.B. Brown J.B. Brown Staying grounded in reality - An opinion on why informatics students should have laboratory experience Staying grounded in reality - An opinion on why informatics students should have laboratory experience Staying grounded in reality - An opinion on why informatics students should have laboratory experience Molecular Informatics, 31, 11-12, 777-781 Molecular Informatics, 31, 11-12, 777-781 Molecular Informatics, 31, 11-12, 777-781 2012 Refereed English Disclose to all
K. Kadoyama; I. Miki; T. Tamura; J.B. Brown; T. Sakaeda; Y. Okuno K. Kadoyama; I. Miki; T. Tamura; J.B. Brown; T. Sakaeda; Y. Okuno K. Kadoyama; I. Miki; T. Tamura; J.B. Brown; T. Sakaeda; Y. Okuno Adverse event profiles of 5-fluorouracil and Capecitabine: Data mining of the public version of the FDA adverse event reporting system, AERS, and reproducibility of clinical observations Adverse event profiles of 5-fluorouracil and Capecitabine: Data mining of the public version of the FDA adverse event reporting system, AERS, and reproducibility of clinical observations Adverse event profiles of 5-fluorouracil and Capecitabine: Data mining of the public version of the FDA adverse event reporting system, AERS, and reproducibility of clinical observations International Journal of Medical Sciences, 9, 1, 33-39 International Journal of Medical Sciences, 9, 1, 33-39 International Journal of Medical Sciences, 9, 1, 33-39 2012 Refereed English Disclose to all
K. Kadoyama; A. Kuwahara; M. Yamamori; J.B. Brown; T. Sakaeda; Y. Okuno K. Kadoyama; A. Kuwahara; M. Yamamori; J.B. Brown; T. Sakaeda; Y. Okuno K. Kadoyama; A. Kuwahara; M. Yamamori; J.B. Brown; T. Sakaeda; Y. Okuno Hypersensitivity reactions to anticancer agents: Data mining of the public version of the FDA adverse event reporting system, AERS Hypersensitivity reactions to anticancer agents: Data mining of the public version of the FDA adverse event reporting system, AERS Hypersensitivity reactions to anticancer agents: Data mining of the public version of the FDA adverse event reporting system, AERS Journal of Experimental and Clinical Cancer Research, 30, 1 Journal of Experimental and Clinical Cancer Research, 30, 1 Journal of Experimental and Clinical Cancer Research, 30, 1 2011 Refereed English Disclose to all
J.B. Brown; T. Urata; T. Tamura; M.A. Arai; T. Kawabata; T. Akutsu J.B. Brown; T. Urata; T. Tamura; M.A. Arai; T. Kawabata; T. Akutsu J.B. Brown; T. Urata; T. Tamura; M.A. Arai; T. Kawabata; T. Akutsu Compound analysis via graph kernels incorporating chirality Compound analysis via graph kernels incorporating chirality Compound analysis via graph kernels incorporating chirality Journal of Bioinformatics and Computational Biology, 8, 63-81 Journal of Bioinformatics and Computational Biology, 8, 63-81 Journal of Bioinformatics and Computational Biology, 8, 63-81 2010/12 Refereed English Disclose to all
J.B. Brown; T. Akutsu J.B. Brown; T. Akutsu J.B. Brown; T. Akutsu Identification of novel DNA repair proteins via primary sequence, secondary structure, and homology Identification of novel DNA repair proteins via primary sequence, secondary structure, and homology Identification of novel DNA repair proteins via primary sequence, secondary structure, and homology BMC Bioinformatics, 10 BMC Bioinformatics, 10 BMC Bioinformatics, 10 2009 Refereed English Disclose to all
C. Kimberling; J.E. Brown C. Kimberling; J.E. Brown C. Kimberling; J.E. Brown Partial complements and transposable dispersions Partial complements and transposable dispersions Partial complements and transposable dispersions Journal of Integer Sequences, 7, 1 Journal of Integer Sequences, 7, 1 Journal of Integer Sequences, 7, 1 2004 Refereed English Disclose to all

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Title language:
Misc
Author Author(Japanese) Author(English) Title Title(Japanese) Title(English) Bibliography Bibliography(Japanese) Bibliography(English) Publication date Refereed paper Language Publishing type Disclose
J.B. Brown; S. Niijima; A. Shiraishi; M. Nakatsui; Y. Okuno J.B. Brown; S. Niijima; A. Shiraishi; M. Nakatsui; Y. Okuno J.B. Brown; S. Niijima; A. Shiraishi; M. Nakatsui; Y. Okuno Chemogenomic approach to comprehensive predictions of ligand-target interactions: A comparative study Chemogenomic approach to comprehensive predictions of ligand-target interactions: A comparative study Chemogenomic approach to comprehensive predictions of ligand-target interactions: A comparative study Proceedings - 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2012, 136-142 Proceedings - 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2012, 136-142 Proceedings - 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2012, 136-142 2012 Refereed English Disclose to all
J.B. Brown; K.C. Dukka Bahadur; E. Tomita; T. Akutsu J.B. Brown; K.C. Dukka Bahadur; E. Tomita; T. Akutsu J.B. Brown; K.C. Dukka Bahadur; E. Tomita; T. Akutsu Multiple methods for protein side chain packing using maximum weight cliques. Multiple methods for protein side chain packing using maximum weight cliques. Multiple methods for protein side chain packing using maximum weight cliques. Genome informatics. International Conference on Genome Informatics, 17, 1, 3-12 Genome informatics. International Conference on Genome Informatics, 17, 1, 3-12 Genome informatics. International Conference on Genome Informatics, 17, 1, 3-12 2006 Refereed English Disclose to all
D Bahadur, J.B. Brown, E Tomita, J Suzuki, T Akutsu D Bahadur, J.B. Brown, E Tomita, J Suzuki, T Akutsu D Bahadur, J.B. Brown, E Tomita, J Suzuki, T Akutsu Large scale protein side-chain packing based on maximum edge-weight clique finding algorithm Large scale protein side-chain packing based on maximum edge-weight clique finding algorithm Large scale protein side-chain packing based on maximum edge-weight clique finding algorithm 2005 International Joint Conference of InCoB, AASBi and KSBI (BIOINFO2005), 228-233 2005 International Joint Conference of InCoB, AASBi and KSBI (BIOINFO2005), 228-233 2005 International Joint Conference of InCoB, AASBi and KSBI (BIOINFO2005), 228-233 2005 Refereed English Disclose to all
I Bitter, J.B. Brown, D Brickman, R Summers I Bitter, J.B. Brown, D Brickman, R Summers I Bitter, J.B. Brown, D Brickman, R Summers Large scale validation of a computer aided polyp detection algorithm for CT colonography using cluster computing Large scale validation of a computer aided polyp detection algorithm for CT colonography using cluster computing Large scale validation of a computer aided polyp detection algorithm for CT colonography using cluster computing Proc. SPIE Vol. 5369, Medical Imaging 2004, 290-294 Proc. SPIE Vol. 5369, Medical Imaging 2004, 290-294 Proc. SPIE Vol. 5369, Medical Imaging 2004, 290-294 2004 Refereed English Disclose to all
Title language:
Books etc
Author Author(Japanese) Author(English) Title Title(Japanese) Title(English) Publisher Publisher(Japanese) Publisher(English) Publication date Language Type Disclose
John Brown BROWNⅢ,John Ellsworth John Brown Unifying bioinformatics and chemoinformatics for drug design Unifying bioinformatics and chemoinformatics for drug design Unifying bioinformatics and chemoinformatics for drug design Hewlett-Packard Japan Hewlett-Packard Japan Hewlett-Packard Japan 2013 Disclose to all
Title language:
External funds: competitive funds and Grants-in-Aid for Scientific Research (Kakenhi)
Type Position Title(Japanese) Title(English) Period
若手研究(B) Representative Drug candidate discovery by development of a context-sensitive target network similarity metric 2013-2016
若手研究(B) Representative Drug candidate discovery by development of a context-sensitive target network similarity metric (平成26年度分) 2014/04/01-2015/03/31
若手研究(B) Representative Drug candidate discovery by development of a context-sensitive target network similarity metric (平成27年度分) 2015/04/01-2016/03/31
若手研究(B) Representative Drug candidate discovery by development of a context-sensitive target network similarity metric (平成28年度分) 2016/04/01-2017/03/31
「いしずえ」研究助成事業 Representative 能動的ケモジェノミクスを用いた機能不明遺伝子の機能解明に向けた研究 Uncovering functions in uncharacterized genes by chemogenomic active learning. 2017/04/01-2018/03/31
挑戦的研究(萌芽) Representative 工業化学物質の受容体結合解析基盤の確立 Construction of a platform for analysis of receptor binding by industrial chemicals. 2017/06/30-2019/03/31
研究活動推進助成 Representative 免疫抑制を解除し腫瘍の排除を補助させる次世代医薬品開発 Development of next-generation therapeutics for blocking immune suppression in cancer 2018/07/26-2019/03/31
挑戦的研究(萌芽) Representative 工業化学物質の受容体結合解析基盤の確立 (平成30年度分) 2018/04/01-2019/03/31
External funds: other than those above
System Main person Title(Japanese) Title(English) Period
研究成果の社会還元・普及事業 ひらめき☆ときめきサイエンス BROWN,JOHN 薬はどのように体内で働くの?私の遺伝子はどう関係しているの?立体模型を一緒に作って理解しましょう! (平成29年度分) Understanding how medicine and genes work in the body by tangible 3D models 2017/04/01-2018/03/31
研究成果の社会還元・普及事業 ひらめき☆ときめきサイエンス BROWN,JOHN 遺伝子と癌と薬はどのような関係があるの?分子立体模型と癌細胞を考察し薬の世界を体験しよう!(平成30年度分) What's the connection between genes, cancer, and medicine? Hands on with 3D models and cancer cells. 2018/05/14-2018/10/20
Teaching subject(s)
Name(Japanese) Name(English) Term Department Period
ILAS Seminar-E2 ILAS Seminar-E2 前期 全学共通科目 2016/04-2017/03
Logic I-E2 Logic I-E2 前期 全学共通科目 2016/04-2017/03
Logic II-E2 Logic II-E2 後期 全学共通科目 2016/04-2017/03
Processing and analyzing data I-E2 Processing and analyzing data I-E2 前期 全学共通科目 2016/04-2017/03
医学英語 Medical English 後期 医学研究科 2016/04-2017/03
ILAS Seminar-E2 ILAS Seminar-E2 前期 全学共通科目 2017/04-2018/03
Logic I-E2 Logic I-E2 前期 全学共通科目 2017/04-2018/03
Logic II-E2 Logic II-E2 後期 全学共通科目 2017/04-2018/03
Processing and Analyzing Data I-E2 Processing and Analyzing Data I-E2 前期 全学共通科目 2017/04-2018/03
医学英語 Medical English 後期 医学研究科 2017/04-2018/03
ILAS Seminar-E2 ILAS Seminar-E2 前期 全学共通科目 2018/04-2019/03
Logic I-E2 Logic I-E2 前期 全学共通科目 2018/04-2019/03
Logic II-E2 Logic II-E2 後期 全学共通科目 2018/04-2019/03
Processing and Analyzing Data I-E2 Processing and Analyzing Data I-E2 前期 全学共通科目 2018/04-2019/03
医学英語 Medical English 後期 医学研究科 2018/04-2019/03
ILAS Seminar-E2 ILAS Seminar-E2 前期 全学共通科目 2019/04-2020/03
Logic I-E2 Logic I-E2 前期 全学共通科目 2019/04-2020/03
Logic II-E2 Logic II-E2 後期 全学共通科目 2019/04-2020/03
Processing and Analyzing Data I-E2 Processing and Analyzing Data I-E2 前期 全学共通科目 2019/04-2020/03
医学英語 Medical English 後期 医学研究科 2019/04-2020/03

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Academic organizaions (conference chair)
Organization name Group name Date
第41回 ケモインフォマティクス討論会 日本化学会 ケモインフォマティクス部会 2018/10
The International Chemical Biology society2018 The International Chemical Biology society 2018/9
JCUPⅨ 研究講習会JCUPⅨ 2018/5