阿久津 達也

Last Update: 2020/07/15 17:24:18

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Name(Kanji/Kana/Abecedarium Latinum)
阿久津 達也/アクツ タツヤ/Akutsu, Tatsuya
Primary Affiliation(Org1/Job title)
Institute for Chemical Research (ICR)/Professor
Affiliated programs (koza)
Org1 Job title
Graduate Schools Informatics Professor
Academic Organizations You are Affiliated to in Japan
Organization name(Japanese) Organization name(English)
日本バイオインフォマティクス学会 Japanese Society for Bioinformatics
情報処理学会 Information Processing Society of Japan
電子情報通信学会 Institute of Electronics, Information and. Communication Engineers
人工知能学会 Japanese Society for Artificial Intelligence
日本生物物理学会 Biophysical Society of Japan
Academic Organizations Overaseas You are Affiliated to
Organization name Country
Association for Computing Machinery 米国
IEEE 米国
Academic Degree
Field(Japanese) Field(English) University(Japanese) University(English) Method
工学博士 東京大学
Graduate School
University(Japanese) University(English) Faculty(Japanese) Faculty(English) Major(Japanese) Major(English) Degree
東京大学 大学院工学系研究科情報工学専攻博士課程 修了
東京大学 大学院工学系研究科航空学専攻修士課程 修了
Undergraduate School / Major(s)
University(Japanese) University(English) Faculty(Japanese) Faculty(English) Major(s)(Japanese) Major(s)(English) Degree
東京大学 工学部航空学科 卒業
High School
Highschool Kana
栃木県立宇都宮高等学校 とちぎけんりつうつのみやこうとうがっこう
Work Experience
Period Organization(Japanese) Organization(English) Job title(Japanese) Job title(English)
1989/04/01-1994/03/31 通商産業省 工業技術院 機械技術研究所 Mechanical Engineering Laboratory, AIST, MITI 研究員 Researcher
1994/04/01-1996/03/31 群馬大学 工学部 情報工学科 Dept. Computer Science, Faculty of Engineering, Gunma University 助教授 Associate Professor
1996/04/01-2001/09/30 東京大学 医科学研究所 ヒトゲノム解析センター Human Genome Center, Institute of Medical Science, University of Tokyo 助教授 Associate Professor
2001/10/01- 京都大学 化学研究所 バイオインフォマティクスセンター Bioinformatics Center, Institute for Chemical Research, Kyoto University 教授 Professor
Personal Profile
(Japanese)
1989年東京大学大学院工学系研究科 博士課程修了。工学博士。通産省機械技術 研究所、群馬大学、東京大学医科学研究所を経て、2001年より京都大学化学研究 所バイオインフォマティクスセンター教授(情報学研究科知能情報学専攻協力講 座)。専門はバイオインフォマティクスおよび計算システム生物学。遺伝子ネッ トワーク、タンパク質相互作用ネットワークなどの数理モデルや情報解析手法の 研究を行っている。主著に「バイオインフォマティクスの数理とアルゴリズム」 (共立出版 2007年)がある。情報処理学会、日本バイオインフォマティクス学 会など会員。
(English)
Tatsuya Akutsu received his M. Eng degree in Aeronautics in 1986 and a Dr. Eng. degree in Information Engineering in 1989 both from University of Tokyo, Japan. After working in Mechanical Engineering Laboratory, Gunma University, and Human Genome Center of the University of Tokyo, he joined Bioinformatics Center, Institute for Chemical Research, Kyoto University, Japan as a professor in Oct. 2001. His research interests include bioinformatics and computational systems biology.
Language of Instruction
Language(japanese) Language(english) Code
英語 English eng
Personal Website(s) (URL(s))
URL
http://www.bic.kyoto-u.ac.jp/takutsu/members/takutsu/japanese.html
ORCID ID
https://orcid.org/0000-0001-9763-797X
researchmap URL
https://researchmap.jp/7000008292
Research Topics
(Japanese)
バイオインフォマティクス、複雑ネットワーク、離散アルゴリズム
(English)
Bioinformatics, Complex Networks, Discrete Algorithms
Overview of the research
(Japanese)
バイオインフォマティクスおよびシステム生物学を対象に、情報科学および数理科学の観点を中心に、理論から実際に利用可能なシステムの構築に至るまで、研究・開発に取り組んでいます。
(English)
We study mathematical models and algorithms for analyzing biological sequences, structures, networks, and systems.
Fields of research (key words)
Key words(Japanese) Key words(English)
バイオインフォマティクス bioinformatics
離散アルゴリズム discrete algorithms
複雑ネットワーク complex networks
Published Papers
Author Author(Japanese) Author(English) Title Title(Japanese) Title(English) Bibliography Bibliography(Japanese) Bibliography(English) Publication date Refereed paper Language Publishing type Disclose
Shogo Nakashima, Jose C Nacher, Jiangning Song, Tatsuya Akutsu Shogo Nakashima, Jose C Nacher, Jiangning Song, Tatsuya Akutsu Shogo Nakashima, Jose C Nacher, Jiangning Song, Tatsuya Akutsu An Overview of Bioinformatics Methods for Analyzing Autism Spectrum Disorders. An Overview of Bioinformatics Methods for Analyzing Autism Spectrum Disorders. An Overview of Bioinformatics Methods for Analyzing Autism Spectrum Disorders. Current pharmaceutical design, 25, 43, 4552-4559 Current pharmaceutical design, 25, 43, 4552-4559 Current pharmaceutical design, 25, 43, 4552-4559 2020 Refereed English Research paper(scientific journal) Disclose to all
Pengyu Liu, Avraham A. Melkman, Tatsuya Akutsu Pengyu Liu, Avraham A. Melkman, Tatsuya Akutsu Pengyu Liu, Avraham A. Melkman, Tatsuya Akutsu Extracting boolean and probabilistic rules from trained neural networks. Extracting boolean and probabilistic rules from trained neural networks. Extracting boolean and probabilistic rules from trained neural networks. Neural Networks, 126, 300-311 Neural Networks, 126, 300-311 Neural Networks, 126, 300-311 2020 Refereed Research paper(scientific journal) Disclose to all
Tatsuya Akutsu, Avraham A. Melkman, Takeyuki Tamura Tatsuya Akutsu, Avraham A. Melkman, Takeyuki Tamura Tatsuya Akutsu, Avraham A. Melkman, Takeyuki Tamura Improved Hardness of Maximum Common Subgraph Problems on Labeled Graphs of Bounded Treewidth and Bounded Degree. Improved Hardness of Maximum Common Subgraph Problems on Labeled Graphs of Bounded Treewidth and Bounded Degree. Improved Hardness of Maximum Common Subgraph Problems on Labeled Graphs of Bounded Treewidth and Bounded Degree. Int. J. Found. Comput. Sci., 31, 2, 253-273 Int. J. Found. Comput. Sci., 31, 2, 253-273 Int. J. Found. Comput. Sci., 31, 2, 253-273 2020 Refereed Research paper(scientific journal) Disclose to all
Fuyi Li, Jinxiang Chen, André Leier, Tatiana T. Marquez-Lago, Quanzhong Liu, Yanze Wang, Jerico Nico De Leon Revote, Alexander Ian Smith, Tatsuya Akutsu, Geoffrey I. Webb, Lukasz A. Kurgan, Jiangning Song Fuyi Li, Jinxiang Chen, André Leier, Tatiana T. Marquez-Lago, Quanzhong Liu, Yanze Wang, Jerico Nico De Leon Revote, Alexander Ian Smith, Tatsuya Akutsu, Geoffrey I. Webb, Lukasz A. Kurgan, Jiangning Song Fuyi Li, Jinxiang Chen, André Leier, Tatiana T. Marquez-Lago, Quanzhong Liu, Yanze Wang, Jerico Nico De Leon Revote, Alexander Ian Smith, Tatsuya Akutsu, Geoffrey I. Webb, Lukasz A. Kurgan, Jiangning Song DeepCleave: a deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites. DeepCleave: a deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites. DeepCleave: a deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites. Bioinform., 36, 4, 1057-1065 Bioinform., 36, 4, 1057-1065 Bioinform., 36, 4, 1057-1065 2020 Refereed Research paper(scientific journal) Disclose to all
Yanju Zhang, Sha Yu, Ruopeng Xie, Jiahui Li, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Alexander Ian Smith, Zongyuan Ge, Jiawei Wang, Trevor Lithgow, Jiangning Song Yanju Zhang, Sha Yu, Ruopeng Xie, Jiahui Li, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Alexander Ian Smith, Zongyuan Ge, Jiawei Wang, Trevor Lithgow, Jiangning Song Yanju Zhang, Sha Yu, Ruopeng Xie, Jiahui Li, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Alexander Ian Smith, Zongyuan Ge, Jiawei Wang, Trevor Lithgow, Jiangning Song PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins. PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins. PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins. Bioinform., 36, 3, 704-712 Bioinform., 36, 3, 704-712 Bioinform., 36, 3, 704-712 2020 Refereed Research paper(scientific journal) Disclose to all
Zhen Chen, Pei Zhao, Fuyi Li, Tatiana T. Marquez-Lago, André Leier, Jerico Nico De Leon Revote, Yan Zhu, David R. Powell, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Alexander Ian Smith, Roger J. Daly, Jian Li, Jiangning Song Zhen Chen, Pei Zhao, Fuyi Li, Tatiana T. Marquez-Lago, André Leier, Jerico Nico De Leon Revote, Yan Zhu, David R. Powell, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Alexander Ian Smith, Roger J. Daly, Jian Li, Jiangning Song Zhen Chen, Pei Zhao, Fuyi Li, Tatiana T. Marquez-Lago, André Leier, Jerico Nico De Leon Revote, Yan Zhu, David R. Powell, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Alexander Ian Smith, Roger J. Daly, Jian Li, Jiangning Song iLearn : an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data. iLearn : an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data. iLearn : an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data. Briefings Bioinform., 21, 3, 1047-1057 Briefings Bioinform., 21, 3, 1047-1057 Briefings Bioinform., 21, 3, 1047-1057 2020 Refereed Research paper(scientific journal) Disclose to all
Jianshen Zhu, Chenxi Wang, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu Jianshen Zhu, Chenxi Wang, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu Jianshen Zhu, Chenxi Wang, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu A Novel Method for Inference of Chemical Compounds of Cycle Index Two with Desired Properties Based on Artificial Neural Networks and Integer Programming. A Novel Method for Inference of Chemical Compounds of Cycle Index Two with Desired Properties Based on Artificial Neural Networks and Integer Programming. A Novel Method for Inference of Chemical Compounds of Cycle Index Two with Desired Properties Based on Artificial Neural Networks and Integer Programming. Algorithms, 13, 5, 124-124 Algorithms, 13, 5, 124-124 Algorithms, 13, 5, 124-124 2020 Refereed Research paper(scientific journal) Disclose to all
Wang F, Akutsu T, Mori T Wang F, Akutsu T, Mori T Wang F, Akutsu T, Mori T Comparison of pseudoknotted RNA secondary structures by topological centroid identification and tree edit distance Comparison of pseudoknotted RNA secondary structures by topological centroid identification and tree edit distance Comparison of pseudoknotted RNA secondary structures by topological centroid identification and tree edit distance Journal of Computational Biology, 27, 1-9 Journal of Computational Biology, 27, 1-9 Journal of Computational Biology, 27, 1-9 2020 Refereed English Research paper(scientific journal) Disclose to all
Saori Itami-Matsumoto, Michiyo Hayakawa, Sawako Uchida-Kobayashi, Masaru Enomoto, Akihiro Tamori, Kazuyuki Mizuno, Hidenori Toyoda, Takeyuki Tamura, Tatsuya Akutsu, Takahiro Ochiya, Norifumi Kawada, Yoshiki Murakami Saori Itami-Matsumoto, Michiyo Hayakawa, Sawako Uchida-Kobayashi, Masaru Enomoto, Akihiro Tamori, Kazuyuki Mizuno, Hidenori Toyoda, Takeyuki Tamura, Tatsuya Akutsu, Takahiro Ochiya, Norifumi Kawada, Yoshiki Murakami Saori Itami-Matsumoto, Michiyo Hayakawa, Sawako Uchida-Kobayashi, Masaru Enomoto, Akihiro Tamori, Kazuyuki Mizuno, Hidenori Toyoda, Takeyuki Tamura, Tatsuya Akutsu, Takahiro Ochiya, Norifumi Kawada, Yoshiki Murakami Circulating Exosomal miRNA Profiles Predict the Occurrence and Recurrence of Hepatocellular Carcinoma in Patients with Direct-Acting Antiviral-Induced Sustained Viral Response. Circulating Exosomal miRNA Profiles Predict the Occurrence and Recurrence of Hepatocellular Carcinoma in Patients with Direct-Acting Antiviral-Induced Sustained Viral Response. Circulating Exosomal miRNA Profiles Predict the Occurrence and Recurrence of Hepatocellular Carcinoma in Patients with Direct-Acting Antiviral-Induced Sustained Viral Response. Biomedicines, 7, 4 Biomedicines, 7, 4 Biomedicines, 7, 4 2019/11/03 Refereed English Disclose to all
Akutsu T, Melkman AA Akutsu T, Melkman AA Akutsu T, Melkman AA Identification of the Structure of a Probabilistic Boolean Network From Samples Including Frequencies of Outcomes. Identification of the Structure of a Probabilistic Boolean Network From Samples Including Frequencies of Outcomes. Identification of the Structure of a Probabilistic Boolean Network From Samples Including Frequencies of Outcomes. IEEE transactions on neural networks and learning systems, 30, 8, 2383-2396 IEEE transactions on neural networks and learning systems, 30, 8, 2383-2396 IEEE transactions on neural networks and learning systems, 30, 8, 2383-2396 2019/08 Refereed Disclose to all
Matsubara T, Ochiai T, Hayashida M, Akutsu T, Nacher JC Matsubara T, Ochiai T, Hayashida M, Akutsu T, Nacher JC Matsubara T, Ochiai T, Hayashida M, Akutsu T, Nacher JC Convolutional neural network approach to lung cancer classification integrating protein interaction network and gene expression profiles. Convolutional neural network approach to lung cancer classification integrating protein interaction network and gene expression profiles. Convolutional neural network approach to lung cancer classification integrating protein interaction network and gene expression profiles. Journal of bioinformatics and computational biology, 17, 3, 1940007 Journal of bioinformatics and computational biology, 17, 3, 1940007 Journal of bioinformatics and computational biology, 17, 3, 1940007 2019/06 Refereed Disclose to all
Lin CY, Ruan P, Li R, Yang JM, See S, Song J, Akutsu T Lin CY, Ruan P, Li R, Yang JM, See S, Song J, Akutsu T Lin CY, Ruan P, Li R, Yang JM, See S, Song J, Akutsu T Deep learning with evolutionary and genomic profiles for identifying cancer subtypes. Deep learning with evolutionary and genomic profiles for identifying cancer subtypes. Deep learning with evolutionary and genomic profiles for identifying cancer subtypes. Journal of bioinformatics and computational biology, 17, 3, 1940005 Journal of bioinformatics and computational biology, 17, 3, 1940005 Journal of bioinformatics and computational biology, 17, 3, 1940005 2019/06 Refereed Disclose to all
Schwartz JM, Otokuni H, Akutsu T, Nacher JC Schwartz JM, Otokuni H, Akutsu T, Nacher JC Schwartz JM, Otokuni H, Akutsu T, Nacher JC Probabilistic controllability approach to metabolic fluxes in normal and cancer tissues. Probabilistic controllability approach to metabolic fluxes in normal and cancer tissues. Probabilistic controllability approach to metabolic fluxes in normal and cancer tissues. Nature communications, 10, 1, 2725 Nature communications, 10, 1, 2725 Nature communications, 10, 1, 2725 2019/06 Refereed Disclose to all
Hou W, Ruan P, Ching WK, Akutsu T Hou W, Ruan P, Ching WK, Akutsu T Hou W, Ruan P, Ching WK, Akutsu T On the number of driver nodes for controlling a Boolean network when the targets are restricted to attractors. On the number of driver nodes for controlling a Boolean network when the targets are restricted to attractors. On the number of driver nodes for controlling a Boolean network when the targets are restricted to attractors. Journal of theoretical biology, 463, 1-11 Journal of theoretical biology, 463, 1-11 Journal of theoretical biology, 463, 1-11 2019/02 Refereed Disclose to all
Ravindran V, Nacher JC, Akutsu T, Ishitsuka M, Osadcenco A, Sunitha V, Bagler G, Schwartz JM, Robertson DL Ravindran V, Nacher JC, Akutsu T, Ishitsuka M, Osadcenco A, Sunitha V, Bagler G, Schwartz JM, Robertson DL Ravindran V, Nacher JC, Akutsu T, Ishitsuka M, Osadcenco A, Sunitha V, Bagler G, Schwartz JM, Robertson DL Network controllability analysis of intracellular signalling reveals viruses are actively controlling molecular systems. Network controllability analysis of intracellular signalling reveals viruses are actively controlling molecular systems. Network controllability analysis of intracellular signalling reveals viruses are actively controlling molecular systems. Scientific reports, 9, 1, 2066 Scientific reports, 9, 1, 2066 Scientific reports, 9, 1, 2066 2019/02 Refereed Disclose to all
Array,Morihiro Hayashida, Tatsuya Akutsu Array,Morihiro Hayashida, Tatsuya Akutsu Array,Morihiro Hayashida, Tatsuya Akutsu Optimal string clustering based on a Laplace-like mixture and EM algorithm on a set of strings. Optimal string clustering based on a Laplace-like mixture and EM algorithm on a set of strings. Optimal string clustering based on a Laplace-like mixture and EM algorithm on a set of strings. J. Comput. Syst. Sci., 106, 94-128 J. Comput. Syst. Sci., 106, 94-128 J. Comput. Syst. Sci., 106, 94-128 2019 Refereed Disclose to all
Jiawei Wang, Bingjiao Yang, Yi An, Tatiana T. Marquez-Lago, André Leier, Jonathan Wilksch, Qingyang Hong, Yang Zhang 0010, Morihiro Hayashida, Tatsuya Akutsu, Geoffrey I. Webb, Richard A. Strugnell, Jiangning Song, Trevor Lithgow Jiawei Wang, Bingjiao Yang, Yi An, Tatiana T. Marquez-Lago, André Leier, Jonathan Wilksch, Qingyang Hong, Yang Zhang 0010, Morihiro Hayashida, Tatsuya Akutsu, Geoffrey I. Webb, Richard A. Strugnell, Jiangning Song, Trevor Lithgow Jiawei Wang, Bingjiao Yang, Yi An, Tatiana T. Marquez-Lago, André Leier, Jonathan Wilksch, Qingyang Hong, Yang Zhang 0010, Morihiro Hayashida, Tatsuya Akutsu, Geoffrey I. Webb, Richard A. Strugnell, Jiangning Song, Trevor Lithgow Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches. Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches. Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches. Briefings Bioinform., 20, 3, 931-951 Briefings Bioinform., 20, 3, 931-951 Briefings Bioinform., 20, 3, 931-951 2019 Refereed Research paper(scientific journal) Disclose to all
Jiangning Song, Yanan Wang, Fuyi Li, Tatsuya Akutsu, Neil D. Rawlings, Geoffrey I. Webb, Kuo-Chen Chou Jiangning Song, Yanan Wang, Fuyi Li, Tatsuya Akutsu, Neil D. Rawlings, Geoffrey I. Webb, Kuo-Chen Chou Jiangning Song, Yanan Wang, Fuyi Li, Tatsuya Akutsu, Neil D. Rawlings, Geoffrey I. Webb, Kuo-Chen Chou iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites. iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites. iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites. Briefings Bioinform., 20, 2, 638-658 Briefings Bioinform., 20, 2, 638-658 Briefings Bioinform., 20, 2, 638-658 2019 Refereed Research paper(scientific journal) Disclose to all
Jiawei Wang, Jiahui Li, Bingjiao Yang, Ruopeng Xie, Tatiana T. Marquez-Lago, André Leier, Morihiro Hayashida, Tatsuya Akutsu, Yanju Zhang, Kuo-Chen Chou, Joel Selkrig, Tieli Zhou, Jiangning Song, Trevor Lithgow Jiawei Wang, Jiahui Li, Bingjiao Yang, Ruopeng Xie, Tatiana T. Marquez-Lago, André Leier, Morihiro Hayashida, Tatsuya Akutsu, Yanju Zhang, Kuo-Chen Chou, Joel Selkrig, Tieli Zhou, Jiangning Song, Trevor Lithgow Jiawei Wang, Jiahui Li, Bingjiao Yang, Ruopeng Xie, Tatiana T. Marquez-Lago, André Leier, Morihiro Hayashida, Tatsuya Akutsu, Yanju Zhang, Kuo-Chen Chou, Joel Selkrig, Tieli Zhou, Jiangning Song, Trevor Lithgow Bastion3: a two-layer ensemble predictor of type III secreted effectors. Bastion3: a two-layer ensemble predictor of type III secreted effectors. Bastion3: a two-layer ensemble predictor of type III secreted effectors. Bioinform., 35, 12, 2017-2028 Bioinform., 35, 12, 2017-2028 Bioinform., 35, 12, 2017-2028 2019 Refereed Research paper(scientific journal) Disclose to all
Jingwen Zeng, Hongmin Cai, Hong Peng, Haiyan Wang, Yue Zhang, Tatsuya Akutsu Jingwen Zeng, Hongmin Cai, Hong Peng, Haiyan Wang, Yue Zhang, Tatsuya Akutsu Jingwen Zeng, Hongmin Cai, Hong Peng, Haiyan Wang, Yue Zhang, Tatsuya Akutsu Causalcall: Nanopore Basecalling Using a Temporal Convolutional Network. Causalcall: Nanopore Basecalling Using a Temporal Convolutional Network. Causalcall: Nanopore Basecalling Using a Temporal Convolutional Network. Frontiers in genetics, 10, 1332-1332 Frontiers in genetics, 10, 1332-1332 Frontiers in genetics, 10, 1332-1332 2019 Refereed English Research paper(scientific journal) Disclose to all
Zhen Chen, Xuhan Liu, Fuyi Li, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Tatsuya Akutsu, Geoffrey I. Webb, Dakang Xu, Alexander Ian Smith, Lei Li 0013, Kuo-Chen Chou, Jiangning Song Zhen Chen, Xuhan Liu, Fuyi Li, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Tatsuya Akutsu, Geoffrey I. Webb, Dakang Xu, Alexander Ian Smith, Lei Li 0013, Kuo-Chen Chou, Jiangning Song Zhen Chen, Xuhan Liu, Fuyi Li, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Tatsuya Akutsu, Geoffrey I. Webb, Dakang Xu, Alexander Ian Smith, Lei Li 0013, Kuo-Chen Chou, Jiangning Song Large-scale comparative assessment of computational predictors for lysine post-translational modification sites. Large-scale comparative assessment of computational predictors for lysine post-translational modification sites. Large-scale comparative assessment of computational predictors for lysine post-translational modification sites. Briefings Bioinform., 20, 6, 2267-2290 Briefings Bioinform., 20, 6, 2267-2290 Briefings Bioinform., 20, 6, 2267-2290 2019 Refereed Research paper(scientific journal) Disclose to all
Yanju Zhang, Ruopeng Xie, Jiawei Wang, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Jiangning Song Yanju Zhang, Ruopeng Xie, Jiawei Wang, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Jiangning Song Yanju Zhang, Ruopeng Xie, Jiawei Wang, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Jiangning Song Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework. Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework. Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework. Briefings Bioinform., 20, 6, 2185-2199 Briefings Bioinform., 20, 6, 2185-2199 Briefings Bioinform., 20, 6, 2185-2199 2019 Refereed Research paper(scientific journal) Disclose to all
Fuyi Li, Yanan Wang, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Neil D. Rawlings, Gholamreza Haffari, Jerico Nico De Leon Revote, Tatsuya Akutsu, Kuo-Chen Chou, Anthony W. Purcell, Robert N. Pike, Geoffrey I. Webb, Alexander Ian Smith, Trevor Lithgow, Roger J. Daly, James C. Whisstock, Jiangning Song Fuyi Li, Yanan Wang, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Neil D. Rawlings, Gholamreza Haffari, Jerico Nico De Leon Revote, Tatsuya Akutsu, Kuo-Chen Chou, Anthony W. Purcell, Robert N. Pike, Geoffrey I. Webb, Alexander Ian Smith, Trevor Lithgow, Roger J. Daly, James C. Whisstock, Jiangning Song Fuyi Li, Yanan Wang, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Neil D. Rawlings, Gholamreza Haffari, Jerico Nico De Leon Revote, Tatsuya Akutsu, Kuo-Chen Chou, Anthony W. Purcell, Robert N. Pike, Geoffrey I. Webb, Alexander Ian Smith, Trevor Lithgow, Roger J. Daly, James C. Whisstock, Jiangning Song Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods. Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods. Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods. Briefings Bioinform., 20, 6, 2150-2166 Briefings Bioinform., 20, 6, 2150-2166 Briefings Bioinform., 20, 6, 2150-2166 2019 Refereed Research paper(scientific journal) Disclose to all
Yu Bao, Simone Marini, Takeyuki Tamura, Mayumi Kamada, Shingo Maegawa, Hiroshi Hosokawa, Jiangning Song, Tatsuya Akutsu Yu Bao, Simone Marini, Takeyuki Tamura, Mayumi Kamada, Shingo Maegawa, Hiroshi Hosokawa, Jiangning Song, Tatsuya Akutsu Yu Bao, Simone Marini, Takeyuki Tamura, Mayumi Kamada, Shingo Maegawa, Hiroshi Hosokawa, Jiangning Song, Tatsuya Akutsu Toward more accurate prediction of caspase cleavage sites: a comprehensive review of current methods, tools and features. Toward more accurate prediction of caspase cleavage sites: a comprehensive review of current methods, tools and features. Toward more accurate prediction of caspase cleavage sites: a comprehensive review of current methods, tools and features. Briefings Bioinform., 20, 5, 1669-1684 Briefings Bioinform., 20, 5, 1669-1684 Briefings Bioinform., 20, 5, 1669-1684 2019 Refereed English Research paper(scientific journal) Disclose to all
Nishiyama Y, Shurbevski A, Nagamochi H, Akutsu T Nishiyama Y, Shurbevski A, Nagamochi H, Akutsu T Nishiyama Y, Shurbevski A, Nagamochi H, Akutsu T Resource Cut, a New Bounding Procedure to Algorithms for Enumerating Tree-Like Chemical Graphs. Resource Cut, a New Bounding Procedure to Algorithms for Enumerating Tree-Like Chemical Graphs. Resource Cut, a New Bounding Procedure to Algorithms for Enumerating Tree-Like Chemical Graphs. IEEE/ACM transactions on computational biology and bioinformatics, 16, 1, 77-90 IEEE/ACM transactions on computational biology and bioinformatics, 16, 1, 77-90 IEEE/ACM transactions on computational biology and bioinformatics, 16, 1, 77-90 2019/01 Refereed Disclose to all
Simone Marini, Francesca Vitali, Sara Rampazzi, Andrea Demartini, Tatsuya Akutsu Simone Marini, Francesca Vitali, Sara Rampazzi, Andrea Demartini, Tatsuya Akutsu Simone Marini, Francesca Vitali, Sara Rampazzi, Andrea Demartini, Tatsuya Akutsu Protease target prediction via matrix factorization. Protease target prediction via matrix factorization. Protease target prediction via matrix factorization. Bioinform., 35, 6, 923-929 Bioinform., 35, 6, 923-929 Bioinform., 35, 6, 923-929 2019 Refereed Research paper(scientific journal) Disclose to all
Nacher JC, Akutsu T Nacher JC, Akutsu T Nacher JC, Akutsu T Controllability Methods for Identifying Associations Between Critical Control ncRNAs and Human Diseases. Controllability Methods for Identifying Associations Between Critical Control ncRNAs and Human Diseases. Controllability Methods for Identifying Associations Between Critical Control ncRNAs and Human Diseases. Methods in molecular biology (Clifton, N.J.), 1912, 289-300 Methods in molecular biology (Clifton, N.J.), 1912, 289-300 Methods in molecular biology (Clifton, N.J.), 1912, 289-300 2019 Refereed Disclose to all
Nacher JC, Ishitsuka M, Miyazaki S, Akutsu T Nacher JC, Ishitsuka M, Miyazaki S, Akutsu T Nacher JC, Ishitsuka M, Miyazaki S, Akutsu T Finding and analysing the minimum set of driver nodes required to control multilayer networks. Finding and analysing the minimum set of driver nodes required to control multilayer networks. Finding and analysing the minimum set of driver nodes required to control multilayer networks. Scientific reports, 9, 1, 576 Scientific reports, 9, 1, 576 Scientific reports, 9, 1, 576 2019/01 Refereed Disclose to all
Li F, Li C, Marquez-Lago TT, Leier A, Akutsu T, Purcell AW, Ian Smith A, Lithgow T, Daly RJ, Song J, Chou KC Li F, Li C, Marquez-Lago TT, Leier A, Akutsu T, Purcell AW, Ian Smith A, Lithgow T, Daly RJ, Song J, Chou KC Li F, Li C, Marquez-Lago TT, Leier A, Akutsu T, Purcell AW, Ian Smith A, Lithgow T, Daly RJ, Song J, Chou KC Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome. Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome. Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome. Bioinformatics (Oxford, England), 34, 24, 4223-4231 Bioinformatics (Oxford, England), 34, 24, 4223-4231 Bioinformatics (Oxford, England), 34, 24, 4223-4231 2018/12 Refereed Disclose to all
Tamura T, Lu W, Song J, Akutsu T Tamura T, Lu W, Song J, Akutsu T Tamura T, Lu W, Song J, Akutsu T Computing Minimum Reaction Modifications in a Boolean Metabolic Network. Computing Minimum Reaction Modifications in a Boolean Metabolic Network. Computing Minimum Reaction Modifications in a Boolean Metabolic Network. IEEE/ACM transactions on computational biology and bioinformatics, 15, 6, 1853-1862 IEEE/ACM transactions on computational biology and bioinformatics, 15, 6, 1853-1862 IEEE/ACM transactions on computational biology and bioinformatics, 15, 6, 1853-1862 2018/11 Refereed Disclose to all
Tatsuya Akutsu, Colin de, la Higuera, Takeyuki Tamura Tatsuya Akutsu, Colin de, la Higuera, Takeyuki Tamura Tatsuya Akutsu, Colin de, la Higuera, Takeyuki Tamura A Simple Linear-Time Algorithm for Computing the Centroid and Canonical Form of a Plane Graph and Its Applications. A Simple Linear-Time Algorithm for Computing the Centroid and Canonical Form of a Plane Graph and Its Applications. A Simple Linear-Time Algorithm for Computing the Centroid and Canonical Form of a Plane Graph and Its Applications. Annual Symposium on Combinatorial Pattern Matching, CPM 2018, July 2-4, 2018 - Qingdao, China, 10:1-10:12 Annual Symposium on Combinatorial Pattern Matching, CPM 2018, July 2-4, 2018 - Qingdao, China, 10:1-10:12 Annual Symposium on Combinatorial Pattern Matching, CPM 2018, July 2-4, 2018 - Qingdao, China, 10:1-10:12 2018 Refereed English Research paper(international conference proceedings) Disclose to all
Tatsuya Akutsu, Jesper Jansson,Ruiming Li, Atsuhiro Takasu, Takeyuki Tamura Tatsuya Akutsu, Jesper Jansson,Ruiming Li, Atsuhiro Takasu, Takeyuki Tamura Tatsuya Akutsu, Jesper Jansson,Ruiming Li, Atsuhiro Takasu, Takeyuki Tamura New and Improved Algorithms for Unordered Tree Inclusion. New and Improved Algorithms for Unordered Tree Inclusion. New and Improved Algorithms for Unordered Tree Inclusion. 29th International Symposium on Algorithms and Computation, ISAAC 2018, December 16-19, 2018, Jiaoxi, Yilan, Taiwan, 27:1-27:12 29th International Symposium on Algorithms and Computation, ISAAC 2018, December 16-19, 2018, Jiaoxi, Yilan, Taiwan, 27:1-27:12 29th International Symposium on Algorithms and Computation, ISAAC 2018, December 16-19, 2018, Jiaoxi, Yilan, Taiwan, 27:1-27:12 2018 Refereed Disclose to all
Yushan Qiu, Xiaoqing Cheng, Wai-Ki Ching, Hao Jiang, Tatsuya Akutsu Yushan Qiu, Xiaoqing Cheng, Wai-Ki Ching, Hao Jiang, Tatsuya Akutsu Yushan Qiu, Xiaoqing Cheng, Wai-Ki Ching, Hao Jiang, Tatsuya Akutsu On Observability of Attractors in Boolean Networks On Observability of Attractors in Boolean Networks On Observability of Attractors in Boolean Networks PROCEEDINGS 2015 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE, 263-266 PROCEEDINGS 2015 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE, 263-266 PROCEEDINGS 2015 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE, 263-266 2015 Refereed English Research paper(international conference proceedings) Disclose to all
T. Akutsu, T. Tamura Tatsuya Akutsu, Takeyuki Tamura T. Akutsu, T. Tamura A polynomial-time algorithm for computing the maximum common connected edge subgraph of outerplanar graphs of bounded Degree A Polynomial-Time Algorithm for Computing the Maximum Common Connected Edge Subgraph of Outerplanar Graphs of Bounded Degree. A polynomial-time algorithm for computing the maximum common connected edge subgraph of outerplanar graphs of bounded Degree Algorithms, 6, 1, 119-135 Algorithms, 6, 1, 119-135 Algorithms, 6, 1, 119-135 2013 Refereed English Disclose to all
T. Akutsu, T. Tamura, A.A. Melkman, A. Takasu Tatsuya Akutsu, Takeyuki Tamura, Avraham A. Melkman, Atsuhiro Takasu T. Akutsu, T. Tamura, A.A. Melkman, A. Takasu On the complexity of finding a largest common subtree of bounded degree On the Complexity of Finding a Largest Common Subtree of Bounded Degree. On the complexity of finding a largest common subtree of bounded degree Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 8070, 4-15 Fundamentals of Computation Theory - 19th International Symposium, FCT 2013, Liverpool, UK, August 19-21, 2013. Proceedings, 8070, 4-15 Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 8070, 4-15 2013 Refereed English Disclose to all
J. C. Nacher, M. Hayashida, T. Akutsu J. C. Nacher, M. Hayashida, T. Akutsu J. C. Nacher, M. Hayashida, T. Akutsu The role of internal duplication in the evolution of multi-domain proteins The role of internal duplication in the evolution of multi-domain proteins The role of internal duplication in the evolution of multi-domain proteins BIOSYSTEMS, 101, 2, 127-135 BIOSYSTEMS, 101, 2, 127-135 BIOSYSTEMS, 101, 2, 127-135 2010/08 Refereed English Research paper(scientific journal) Disclose to all
Song J, Takemoto K, Shen H, Tan H, Michael Gromiha M, Akutsu T Song J, Takemoto K, Shen H, Tan H, Michael Gromiha M, Akutsu T Song J, Takemoto K, Shen H, Tan H, Michael Gromiha M, Akutsu T Prediction of Protein Folding Rates from Structural Topology and Complex Network Properties Prediction of Protein Folding Rates from Structural Topology and Complex Network Properties Prediction of Protein Folding Rates from Structural Topology and Complex Network Properties IPSJ Transactions on Bioinformatics, 3, 40-53 IPSJ Transactions on Bioinformatics, 3, 40-53 IPSJ Transactions on Bioinformatics, 3, 40-53 2010/05 Refereed Disclose to all
Tamura T, Takemoto K, Akutsu, T Tamura T, Takemoto K, Akutsu, T Tamura T, Takemoto K, Akutsu, T Finding minimum reaction cuts of metabolic networks under a Boolean model using integer programming and feedback vertex sets Finding minimum reaction cuts of metabolic networks under a Boolean model using integer programming and feedback vertex sets Finding minimum reaction cuts of metabolic networks under a Boolean model using integer programming and feedback vertex sets International Journal of Knowledge Discovery in Bioinformatics, 1, 1, 14-31 International Journal of Knowledge Discovery in Bioinformatics, 1, 1, 14-31 International Journal of Knowledge Discovery in Bioinformatics, 1, 1, 14-31 2010/01 Refereed Disclose to all
J. C. Nacher, T. Ochiai, M. Hayashida, T. Akutsu J. C. Nacher, T. Ochiai, M. Hayashida, T. Akutsu J. C. Nacher, T. Ochiai, M. Hayashida, T. Akutsu A mathematical model for generating bipartite graphs and its application to protein networks A mathematical model for generating bipartite graphs and its application to protein networks A mathematical model for generating bipartite graphs and its application to protein networks JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL, 42, 48 JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL, 42, 48 JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL, 42, 48 2009/12 Refereed English Research paper(scientific journal) Disclose to all
M. Hayashida, T. Tamura, T. Akutsu, W. -K. Ching, Y. Cong M. Hayashida, T. Tamura, T. Akutsu, W. -K. Ching, Y. Cong M. Hayashida, T. Tamura, T. Akutsu, W. -K. Ching, Y. Cong Distribution and enumeration of attractors in probabilistic Boolean networks Distribution and enumeration of attractors in probabilistic Boolean networks Distribution and enumeration of attractors in probabilistic Boolean networks IET SYSTEMS BIOLOGY, 3, 6, 465-474 IET SYSTEMS BIOLOGY, 3, 6, 465-474 IET SYSTEMS BIOLOGY, 3, 6, 465-474 2009/11 Refereed English Research paper(scientific journal) Disclose to all
J. C. Nacher, M. Hayashida, T. Akutsu J. C. Nacher, M. Hayashida, T. Akutsu J. C. Nacher, M. Hayashida, T. Akutsu Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairs Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairs Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairs BIOSYSTEMS, 95, 2, 155-159 BIOSYSTEMS, 95, 2, 155-159 BIOSYSTEMS, 95, 2, 155-159 2009/02 Refereed English Research paper(scientific journal) Disclose to all
Takeyuki Tamura, Tatsuya Akutsu Takeyuki Tamura, Tatsuya Akutsu Takeyuki Tamura, Tatsuya Akutsu Detecting a Singleton Attractor in a Boolean Network Utilizing SAT Algorithms Detecting a Singleton Attractor in a Boolean Network Utilizing SAT Algorithms Detecting a Singleton Attractor in a Boolean Network Utilizing SAT Algorithms IEICE TRANSACTIONS ON FUNDAMENTALS OF ELECTRONICS COMMUNICATIONS AND COMPUTER SCIENCES, E92A, 2, 493-501 IEICE TRANSACTIONS ON FUNDAMENTALS OF ELECTRONICS COMMUNICATIONS AND COMPUTER SCIENCES, E92A, 2, 493-501 IEICE TRANSACTIONS ON FUNDAMENTALS OF ELECTRONICS COMMUNICATIONS AND COMPUTER SCIENCES, E92A, 2, 493-501 2009/02 Refereed English Research paper(scientific journal) Disclose to all
T. Tamura, T. Akutsu Takeyuki Tamura, Tatsuya Akutsu T. Tamura, T. Akutsu Algorithms for singleton attractor detection in planar and nonplanar AND/OR Boolean networks Algorithms for Singleton Attractor Detection in Planar and Nonplanar AND/OR Boolean Networks. Algorithms for singleton attractor detection in planar and nonplanar AND/OR Boolean networks Mathematics in Computer Science, 2, 3, 401-420 Mathematics in Computer Science, 2, 3, 401-420 Mathematics in Computer Science, 2, 3, 401-420 2009 Refereed English Disclose to all
HAYASHIDA Morihiro, AKUTSU Tatsuya, NAGAMOCHI Hiroshi HAYASHIDA Morihiro, AKUTSU Tatsuya, NAGAMOCHI Hiroshi HAYASHIDA Morihiro, AKUTSU Tatsuya, NAGAMOCHI Hiroshi A Clustering Method for Analysis of Sequence Similarity Networks of Proteins Using Maximal Components of Graphs A Clustering Method for Analysis of Sequence Similarity Networks of Proteins Using Maximal Components of Graphs A Clustering Method for Analysis of Sequence Similarity Networks of Proteins Using Maximal Components of Graphs 情報処理学会論文誌, 49, SIG5(TBIO4), 15-24 情報処理学会論文誌, 49, SIG5(TBIO4), 15-24 情報処理学会論文誌, 49, SIG5(TBIO4), 15-24 2008/03/15 Refereed English Disclose to all
T. Tamura, M. Hayashida, T. Akutsu, S.-Q. Zhang, W.-K. Ching T. Tamura, M. Hayashida, T. Akutsu, S.-Q. Zhang, W.-K. Ching T. Tamura, M. Hayashida, T. Akutsu, S.-Q. Zhang, W.-K. Ching Algorithms and complexity analyses for control of singleton attractors in Boolean networks Algorithms and complexity analyses for control of singleton attractors in Boolean networks Algorithms and complexity analyses for control of singleton attractors in Boolean networks Eurasip Journal on Bioinformatics and Systems Biology, 2008 Eurasip Journal on Bioinformatics and Systems Biology, 2008 Eurasip Journal on Bioinformatics and Systems Biology, 2008 2008 Refereed English Disclose to all
JC Nacher, M Hayashida, T Akutsu JC Nacher, M Hayashida, T Akutsu JC Nacher, M Hayashida, T Akutsu Protein domain networks: Scale-free mixing of positive and negative exponents Protein domain networks: Scale-free mixing of positive and negative exponents Protein domain networks: Scale-free mixing of positive and negative exponents PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 367, 538-552 PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 367, 538-552 PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 367, 538-552 2006/07 Refereed English Research paper(scientific journal) Disclose to all
竹本和広, ホセ・C・ナチェル, 阿久津達也 竹本和広, ホセ・C・ナチェル, 阿久津達也 原核生物の代謝ネットワークにおける 構造の乱雑さと生育温度の関係 原核生物の代謝ネットワークにおける 構造の乱雑さと生育温度の関係 日本ソフトウェア科学会研究会資料, 44, 31-37 日本ソフトウェア科学会研究会資料, 44, 31-37 , 44, 31-37 2006 Refereed Research paper(other science council materials etc.) Disclose to all
KF Aoki, H Mamitsuka, T Akutsu, M Kanehisa KF Aoki, H Mamitsuka, T Akutsu, M Kanehisa KF Aoki, H Mamitsuka, T Akutsu, M Kanehisa A score matrix to reveal the hidden links in glycans A score matrix to reveal the hidden links in glycans A score matrix to reveal the hidden links in glycans BIOINFORMATICS, 21, 8, 1457-1463 BIOINFORMATICS, 21, 8, 1457-1463 BIOINFORMATICS, 21, 8, 1457-1463 2005/04 Refereed English Research paper(scientific journal) Disclose to all
D Fukagawa, T Akutsu D Fukagawa, T Akutsu D Fukagawa, T Akutsu Performance analysis of a greedy algorithm for inferring Boolean functions Performance analysis of a greedy algorithm for inferring Boolean functions Performance analysis of a greedy algorithm for inferring Boolean functions INFORMATION PROCESSING LETTERS, 93, 1, 7-12 INFORMATION PROCESSING LETTERS, 93, 1, 7-12 INFORMATION PROCESSING LETTERS, 93, 1, 7-12 2005/01 Refereed English Research paper(scientific journal) Disclose to all
Ueda N, Aoki-Kinoshita K.F, Yamaguchi A, Akutsu T, Mamitsuka H Ueda N, Aoki-Kinoshita K.F, Yamaguchi A, Akutsu T, Mamitsuka H Ueda N, Aoki-Kinoshita K.F, Yamaguchi A, Akutsu T, Mamitsuka H A probabilistic model for mining labeled ordered trees: Capturing patterns in carbohydrate sugar chains A probabilistic model for mining labeled ordered trees: Capturing patterns in carbohydrate sugar chains A probabilistic model for mining labeled ordered trees: Capturing patterns in carbohydrate sugar chains IEEE Transactions on Knowledge and Data Engineering, 17, 8, 1051-1064 IEEE Transactions on Knowledge and Data Engineering, 17, 8, 1051-1064 IEEE Transactions on Knowledge and Data Engineering, 17, 8, 1051-1064 2005 Refereed Disclose to all
KF Aoki, A Yamaguchi, N Ueda, T Akutsu, H Mamitsuka, S Goto, M Kanehisa KF Aoki, A Yamaguchi, N Ueda, T Akutsu, H Mamitsuka, S Goto, M Kanehisa KF Aoki, A Yamaguchi, N Ueda, T Akutsu, H Mamitsuka, S Goto, M Kanehisa KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains NUCLEIC ACIDS RESEARCH, 32, W267-W272 NUCLEIC ACIDS RESEARCH, 32, W267-W272 NUCLEIC ACIDS RESEARCH, 32, W267-W272 2004/07 Refereed English Research paper(scientific journal) Disclose to all
T Akutsu, S Kuhara, O Maruyama, S Miyano T Akutsu, S Kuhara, O Maruyama, S Miyano T Akutsu, S Kuhara, O Maruyama, S Miyano Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model THEORETICAL COMPUTER SCIENCE, 298, 1, 235-251 THEORETICAL COMPUTER SCIENCE, 298, 1, 235-251 THEORETICAL COMPUTER SCIENCE, 298, 1, 235-251 2003/04 Refereed English Research paper(scientific journal) Disclose to all
Tatsuya Akutsu, Hisao Tamaki, Takeshi Tokuyama Tatsuya Akutsu, Hisao Tamaki, Takeshi Tokuyama Tatsuya Akutsu, Hisao Tamaki, Takeshi Tokuyama Distribution of Distances and Triangles in Point Sets and Its Application to Largest Common Point Set Problems Distribution of Distances and Triangles in Point Sets and Its Application to Largest Common Point Set Problems Distribution of Distances and Triangles in Point Sets and Its Application to Largest Common Point Set Problems Proc. 13th ACM Symposium on Computational Geometry, 314-323 Proc. 13th ACM Symposium on Computational Geometry, 314-323 Proc. 13th ACM Symposium on Computational Geometry, 314-323 1997/06 Refereed English Research paper(international conference proceedings) Disclose to all
T Akutsu T Akutsu T Akutsu Protein structure alignment using dynamic programming and iterative improvement Protein structure alignment using dynamic programming and iterative improvement Protein structure alignment using dynamic programming and iterative improvement IEICE TRANSACTIONS ON INFORMATION AND SYSTEMS, E79D, 12, 1629-1636 IEICE TRANSACTIONS ON INFORMATION AND SYSTEMS, E79D, 12, 1629-1636 IEICE TRANSACTIONS ON INFORMATION AND SYSTEMS, E79D, 12, 1629-1636 1996/12 Refereed English Research paper(scientific journal) Disclose to all

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Author Author(Japanese) Author(English) Title Title(Japanese) Title(English) Bibliography Bibliography(Japanese) Bibliography(English) Publication date Refereed paper Language Publishing type Disclose
Cheng Xiaoqing, Tamura Takeyuki, Ching Wai-Ki, Akutsu Tatsuya Cheng Xiaoqing, Tamura Takeyuki, Ching Wai-Ki, Akutsu Tatsuya On the minimum number of genes required for discriminating steady states under a Boolean model On the minimum number of genes required for discriminating steady states under a Boolean model 情報処理学会第51回バイオ情報学研究会 情報処理学会第51回バイオ情報学研究会 2017/09 Disclose to all
A short review of methods for Caspase cleavage site prediction. A short review of methods for Caspase cleavage site prediction. 情報処理学会第51回バイオ情報学研究会 情報処理学会第51回バイオ情報学研究会 2017/09 Disclose to all
石塚雅之, 阿久津達也, ナチェルホセ 石塚雅之, 阿久津達也, ナチェルホセ 最小支配集合に基づく有向生体ネットワーク解析のための高速アルゴリズム 最小支配集合に基づく有向生体ネットワーク解析のための高速アルゴリズム 情報処理学会バイオ情報学研究会 情報処理学会バイオ情報学研究会 2017/06 Japanese Summary of the papers read (national conference and other science council) Disclose to all
阿久津達也 阿久津達也 阿久津達也 数理と人工知能技術によるゲノム情報と化学情報の解析 数理と人工知能技術によるゲノム情報と化学情報の解析 数理と人工知能技術によるゲノム情報と化学情報の解析 海洋化学研究, 29, 2, 85‐91 海洋化学研究, 29, 2, 85‐91 海洋化学研究, 29, 2, 85‐91 2016/11/12 Japanese Disclose to all
Xiaoqing Cheng, Tomoya Mori, Yushan Qiu, Wai-Ki Ching, Tatsuya Akutsu Xiaoqing Cheng, Tomoya Mori, Yushan Qiu, Wai-Ki Ching, Tatsuya Akutsu Xiaoqing Cheng, Tomoya Mori, Yushan Qiu, Wai-Ki Ching, Tatsuya Akutsu Exact Identification of the Structure of a Probabilistic Boolean Network from Samples Exact Identification of the Structure of a Probabilistic Boolean Network from Samples Exact Identification of the Structure of a Probabilistic Boolean Network from Samples IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 13, 6, 1107-1116 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 13, 6, 1107-1116 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 13, 6, 1107-1116 2016/11 English Summary of the papers read (national conference and other science council) Disclose to all
Fei He, Akiyoshi Hanai, NAGAMOCHI Hiroshi, Tatsuya Akutsu Fei He, Akiyoshi Hanai, 永持 仁, Tatsuya Akutsu Fei He, Akiyoshi Hanai, NAGAMOCHI Hiroshi, Tatsuya Akutsu Enumerating Naphthalene Isomers of Tree-like Chemical Graphs. Enumerating Naphthalene Isomers of Tree-like Chemical Graphs. Enumerating Naphthalene Isomers of Tree-like Chemical Graphs. BIOINFORMATICS, 3, 258-265 BIOINFORMATICS, 3, 258-265 BIOINFORMATICS, 3, 258-265 2016/02 Refereed English Disclose to all
小谷野仁, 林田守広, 阿久津達也 小谷野仁, 林田守広, 阿久津達也 小谷野仁, 林田守広, 阿久津達也 文字列データの統計的クラスタリングのためのLaplace様混合モデルとEMアルゴリズムの理論 文字列データの統計的クラスタリングのためのLaplace様混合モデルとEMアルゴリズムの理論 文字列データの統計的クラスタリングのためのLaplace様混合モデルとEMアルゴリズムの理論 日本応用数理学会年会講演予稿集(CD-ROM), 2015, ROMBUNNO.9GATSU9NICHI,13:30,F,1 日本応用数理学会年会講演予稿集(CD-ROM), 2015, ROMBUNNO.9GATSU9NICHI,13:30,F,1 日本応用数理学会年会講演予稿集(CD-ROM), 2015, ROMBUNNO.9GATSU9NICHI,13:30,F,1 2015/09/02 Japanese Disclose to all
劉立偉, 森智弥, 趙楊, 林田守広, 阿久津達也 劉立偉, 森智弥, 趙楊, 林田守広, 阿久津達也 劉立偉, 森智弥, 趙楊, 林田守広, 阿久津達也 根付き順序木の圧縮における分割型文法とオイラー文字列との比較 根付き順序木の圧縮における分割型文法とオイラー文字列との比較 根付き順序木の圧縮における分割型文法とオイラー文字列との比較 電子情報通信学会技術研究報告, 115, 112(IBISML2015 1-26), 245-246 電子情報通信学会技術研究報告, 115, 112(IBISML2015 1-26), 245-246 電子情報通信学会技術研究報告, 115, 112(IBISML2015 1-26), 245-246 2015/06/16 Japanese Disclose to all
小谷野仁, 林田守広, 阿久津達也 小谷野仁, 林田守広, 阿久津達也 小谷野仁, 林田守広, 阿久津達也 String Clustering Based on a Laplace-like Mixture and EM Algorithm on a Set of Strings 文字列の集合上のLaplace様混合モデルとEMアルゴリズムに基づく文字列クラスタリング String Clustering Based on a Laplace-like Mixture and EM Algorithm on a Set of Strings 電子情報通信学会技術研究報告, 115, 112(IBISML2015 1-26), 131-136 電子情報通信学会技術研究報告, 115, 112(IBISML2015 1-26), 131-136 電子情報通信学会技術研究報告, 115, 112(IBISML2015 1-26), 131-136 2015/06/16 Japanese Disclose to all
林田守広, 阮佩穎, 阿久津達也 林田守広, 阮佩穎, 阿久津達也 タンパク質ドメイン構成に基づくプロテオーム圧縮 タンパク質ドメイン構成に基づくプロテオーム圧縮 研究報告数理モデル化と問題解決(MPS), 2014, 11, 1-2 研究報告数理モデル化と問題解決(MPS), 2014, 11, 1-2 , 2014, 11, 1-2 2014/09/18 Japanese Disclose to all
KOYANO HITOSHI, HAYASHIDA MORIHIRO, AKUTSU TATSUYA 小谷野 仁, 林田 守広, 阿久津 達也 KOYANO HITOSHI, HAYASHIDA MORIHIRO, AKUTSU TATSUYA Maximum Margin Classifier Working in a Metric Space of Strings and Its Application to Protein Science 文字列の距離空間上の最大マージン識別器とそのタンパク質科学への応用 (情報論的学習理論と機械学習) Maximum Margin Classifier Working in a Metric Space of Strings and Its Application to Protein Science 電子情報通信学会技術研究報告 = IEICE technical report : 信学技報, 114, 105, 75-82 電子情報通信学会技術研究報告 = IEICE technical report : 信学技報, 114, 105, 75-82 電子情報通信学会技術研究報告 = IEICE technical report : 信学技報, 114, 105, 75-82 2014/06/25 Japanese Disclose to all
Hitoshi Koyano, Morihiro Hayashida, Tatsuya Akutsu 小谷野 仁, 林田 守広, 阿久津 達也 Hitoshi Koyano, Morihiro Hayashida, Tatsuya Akutsu Maximum Margin Classifier Working in a Metric Space of Strings and Its Application to Protein Science 文字列の距離空間上の最大マージン識別器とそのタンパク質科学への応用 Maximum Margin Classifier Working in a Metric Space of Strings and Its Application to Protein Science IPSJ SIG Notes, 2014, 13, 1-8 研究報告数理モデル化と問題解決(MPS), 2014, 13, 1-8 IPSJ SIG Notes, 2014, 13, 1-8 2014/06/18 Japanese Disclose to all
趙 楊, 林田 守広, 阿久津 達也 趙 楊, 林田 守広, 阿久津 達也 趙 楊, 林田 守広, 阿久津 達也 Integer programming-based method for grammar-based compression of ordered and unordered trees (特集 「脳科学と知識処理」および一般) Integer programming-based method for grammar-based compression of ordered and unordered trees (特集 「脳科学と知識処理」および一般) Integer programming-based method for grammar-based compression of ordered and unordered trees (特集 「脳科学と知識処理」および一般) 人工知能基本問題研究会, 78, 51-56 人工知能基本問題研究会, 78, 51-56 人工知能基本問題研究会, 78, 51-56 2010/07/31 English Disclose to all
深川大路, 阿久津達也, 高須淳宏, 安達淳 深川大路, 阿久津達也, 高須淳宏, 安達淳 深川大路, 阿久津達也, 高須淳宏, 安達淳 高さ制約付き無順序木の高速類似検索アルゴリズムについて 高さ制約付き無順序木の高速類似検索アルゴリズムについて 高さ制約付き無順序木の高速類似検索アルゴリズムについて 情報処理学会全国大会講演論文集, 72nd, 5, 5.45-5.46 情報処理学会全国大会講演論文集, 72nd, 5, 5.45-5.46 情報処理学会全国大会講演論文集, 72nd, 5, 5.45-5.46 2010/03/08 Japanese Disclose to all
FUKAGAWA Daiji, AKUTSU Tatsuya, TAKASU Atsuhiro, ADACHI Jun 深川 大路, 阿久津 達也, 高須 淳宏, 安達 淳 FUKAGAWA Daiji, AKUTSU Tatsuya, TAKASU Atsuhiro, ADACHI Jun 2K-1 A fast similarity search algortihm for unordered trees of bounded height 2K-1 高さ制約付き無順序木の高速類似検索アルゴリズムについて(情報爆発時代におけるアルゴリズム高率化,一般セッション,「情報爆発」時代に向けた新IT基盤技術,情報処理学会創立50周年記念(第72回)全国大会) 2K-1 A fast similarity search algortihm for unordered trees of bounded height 全国大会講演論文集, 72, 5, "5-45"-"5-46" 全国大会講演論文集, 72, 5, "5-45"-"5-46" 全国大会講演論文集, 72, 5, "5-45"-"5-46" 2010/03/08 Japanese Disclose to all
FUKAGAWA Daiji, AKUTSU Tatsuya, TAKASU Atsuhiro 阿久津達也, 深川大路, 高須淳宏 FUKAGAWA Daiji, AKUTSU Tatsuya, TAKASU Atsuhiro Approximating Edit Distance of Unordered Trees of Bounded Height 高さの制限された無順序木の編集距離問題に対する近似アルゴリズム Approximating Edit Distance of Unordered Trees of Bounded Height IEICE technical report. Theoretical foundations of Computing, 109, 108, 31-36 電子情報通信学会技術研究報告. COMP, コンピュテーション, 109, 108, 31-36 IEICE technical report. Theoretical foundations of Computing, 109, 108, 31-36 2009/06/22 English Disclose to all
高須 淳宏, 深川 大路, 阿久津 達也 高須 淳宏, 深川 大路, 阿久津 達也 高須 淳宏, 深川 大路, 阿久津 達也 Statistical learning algorithm for tree similarity (特集「知識発見の諸科学への応用」および一般) Statistical learning algorithm for tree similarity (特集「知識発見の諸科学への応用」および一般) Statistical learning algorithm for tree similarity (特集「知識発見の諸科学への応用」および一般) 人工知能基本問題研究会, 71, 0, 51-56 人工知能基本問題研究会, 71, 0, 51-56 人工知能基本問題研究会, 71, 0, 51-56 2008/09/17 English Disclose to all
深川大路, 高須淳宏, 阿久津達也 深川大路, 高須淳宏, 阿久津達也 深川大路, 高須淳宏, 阿久津達也 確率モデルに基づく木の類似度のパラメータ学習について 確率モデルに基づく木の類似度のパラメータ学習について 確率モデルに基づく木の類似度のパラメータ学習について 情報処理学会全国大会講演論文集, 70th, 5, 5.17-5.18 情報処理学会全国大会講演論文集, 70th, 5, 5.17-5.18 情報処理学会全国大会講演論文集, 70th, 5, 5.17-5.18 2008/03/13 Japanese Disclose to all
Fukagawa Daiji, Takasu Atsuhiro, Akutsu Tatsuya 深川 大路, 高須 淳宏, 阿久津 達也 Fukagawa Daiji, Takasu Atsuhiro, Akutsu Tatsuya 2J-3 Learning Tree Similarity Based on a Statistical Model 2J-3 確率モデルに基づく木の類似度のパラメータ学習について(情報爆発時代におけるマルチメディアデータと交通情報システム,一般セッション,「情報爆発」時代に向けた新しいIT基盤技術) 2J-3 Learning Tree Similarity Based on a Statistical Model 全国大会講演論文集, 70, 5, "5-17"-"5-18" 全国大会講演論文集, 70, 5, "5-17"-"5-18" 全国大会講演論文集, 70, 5, "5-17"-"5-18" 2008/03/13 Japanese Disclose to all
林田 守広, 阿久津 達也 林田 守広, 阿久津 達也 タンパク質間相互作用強度の計算機による予測法 (タンパク質間相互作用) タンパク質間相互作用強度の計算機による予測法 (タンパク質間相互作用) 生体の科学, 58, 5, 374-378 生体の科学, 58, 5, 374-378 , 58, 5, 374-378 2007/09 Japanese Disclose to all
H. Fujiwara, L. Zhao, Hiroshi Nagamochi, T. Akutsu, W. Jiexun H. Fujiwara, L. Zhao, Hiroshi Nagamochi, T. Akutsu, W. Jiexun H. Fujiwara, L. Zhao, Hiroshi Nagamochi, T. Akutsu, W. Jiexun Enumerating tree-like chemical structures from feature vector Enumerating tree-like chemical structures from feature vector Enumerating tree-like chemical structures from feature vector 2007 Korea-Japan Joint Workshop on Algorithms and Computation, pp. 48-55 2007 Korea-Japan Joint Workshop on Algorithms and Computation, pp. 48-55 2007 Korea-Japan Joint Workshop on Algorithms and Computation, pp. 48-55 2007 Refereed English Disclose to all
HAYASHIDA Morihiro, AKUTSU Tatsuya, NAGAMOCHI Hiroshi 林田 守広, 阿久津 達也, 永持仁 HAYASHIDA Morihiro, AKUTSU Tatsuya, NAGAMOCHI Hiroshi A novel clustering method for analysis of biological networks using maximal components of graphs グラフの極大成分を用いた生物ネットワークの解析 A novel clustering method for analysis of biological networks using maximal components of graphs IPSJ SIG technical reports, 2006, 99, 1-8 情報処理学会研究報告バイオ情報学(BIO), 2006, 99, 1-8 IPSJ SIG technical reports, 2006, 99, 1-8 2006/09/15 English Disclose to all
AKUTSU Tatsuya, FUKAGAWA Daiji, TAKASU Atsuhiro 阿久津 達也, 深川 大路, 高須 淳宏 AKUTSU Tatsuya, FUKAGAWA Daiji, TAKASU Atsuhiro Approximating Tree Edit Distance Through String Edit Distance 木の編集距離の文字列の編集距離による近似 Approximating Tree Edit Distance Through String Edit Distance IEICE technical report. Theoretical foundations of Computing, 106, 63, 17-24 電子情報通信学会技術研究報告. COMP, コンピュテーション, 106, 63, 17-24 IEICE technical report. Theoretical foundations of Computing, 106, 63, 17-24 2006/05/17 English Disclose to all
NACHER Jose C, HAYASHIDA Morihiro, AKUTSU Tatsuya JoseC.Nacher, 林田 守広, 阿久津 達也 NACHER Jose C, HAYASHIDA Morihiro, AKUTSU Tatsuya Scale-free mixing in protein domain networks タンパク質ドメインネットワークにおける混合スケールフリー次数分布 Scale-free mixing in protein domain networks IPSJ SIG technical reports, 2006, 13, 65-72 情報処理学会研究報告バイオ情報学(BIO), 2006, 13, 65-72 IPSJ SIG technical reports, 2006, 13, 65-72 2006/02/10 English Disclose to all
AKUTSU Tatsuya, FUKAGAWA Daiji 阿久津 達也, 深川 大路 AKUTSU Tatsuya, FUKAGAWA Daiji On the Complexity of Inferring a Graph from Path Frequency パス頻度ベクトルからのグラフ推定問題の困難性について On the Complexity of Inferring a Graph from Path Frequency 電子情報通信学会技術研究報告. COMP, コンピュテーション, 105, 7, 49-55 電子情報通信学会技術研究報告. COMP, コンピュテーション, 105, 7, 49-55 電子情報通信学会技術研究報告. COMP, コンピュテーション, 105, 7, 49-55 2005/04/11 English Disclose to all
AKUTSU Tatsuya, HAYASHIDA Morihiro, TOMITA Etsuji, SUZUKI Jun'ichi, HORIMOTO Katsuhisa 阿久津 達也, 林田 守広, 富田 悦次, 鈴木 純一, 堀本 勝久 AKUTSU Tatsuya, HAYASHIDA Morihiro, TOMITA Etsuji, SUZUKI Jun'ichi, HORIMOTO Katsuhisa Profile Alignment with Constraints 制約付きプロファイルアライメント Profile Alignment with Constraints IEICE technical report. Theoretical foundations of Computing, 103, 622, 47-54 電子情報通信学会技術研究報告. COMP, コンピュテーション, 103, 622, 47-54 IEICE technical report. Theoretical foundations of Computing, 103, 622, 47-54 2004/01/22 English Disclose to all
FUKAGAWA Daiji, AKUTSU Tatsuya 深川 大路, 阿久津 達也 FUKAGAWA Daiji, AKUTSU Tatsuya Performance Analysis of a Greedy Algorithm for Inferring Boolean Functions ブール関数推定のための貪欲アルゴリズムの性能解析 Performance Analysis of a Greedy Algorithm for Inferring Boolean Functions IEICE technical report. Theoretical foundations of Computing, 103, 31, 9-14 電子情報通信学会技術研究報告. COMP, コンピュテーション, 103, 31, 9-14 IEICE technical report. Theoretical foundations of Computing, 103, 31, 9-14 2003/04/18 Japanese Disclose to all

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Title language:
Conference Activities & Talks
Title Title(Japanese) Title(English) Conference Conference(Japanese) Conference(English) Promotor Promotor(Japanese) Promotor(English) Date Language Assortment Disclose
A Novel Method for the Inverse QSAR/QSPR based on Artificial Neural Networks and Mixed Integer Linear Programming with Guaranteed Admissibility A Novel Method for the Inverse QSAR/QSPR based on Artificial Neural Networks and Mixed Integer Linear Programming with Guaranteed Admissibility A Novel Method for the Inverse QSAR/QSPR based on Artificial Neural Networks and Mixed Integer Linear Programming with Guaranteed Admissibility 13th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2020) 13th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2020) 13th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2020) 2020/02/24 English Oral presentation(general) Disclose to all
Breast cancer subtype by imbalanced omics data through a deep learning fusion model Breast cancer subtype by imbalanced omics data through a deep learning fusion model Breast cancer subtype by imbalanced omics data through a deep learning fusion model 10th International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB 2020) 10th International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB 2020) 10th International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB 2020) 2020/01/21 English Oral presentation(general) Disclose to all
Procleave: A Bioinformatic Approach for Protease-specific Substrate Cleavage Site Prediction by Combining Sequence and Structural Information Procleave: A Bioinformatic Approach for Protease-specific Substrate Cleavage Site Prediction by Combining Sequence and Structural Information Procleave: A Bioinformatic Approach for Protease-specific Substrate Cleavage Site Prediction by Combining Sequence and Structural Information 10h International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB2020) 10h International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB2020) 10h International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB2020) 2020/01/21 English Oral presentation(general) Disclose to all
A method for the inverse QSAR/QSPR based on artificial neural networks and mixed integer linear programming A method for the inverse QSAR/QSPR based on artificial neural networks and mixed integer linear programming A method for the inverse QSAR/QSPR based on artificial neural networks and mixed integer linear programming 10th International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB 2020) 10th International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB 2020) 10th International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB 2020) 2020/01/20 English Oral presentation(general) Disclose to all
Boolean Network-Based Approaches towards Precisions Medicine[Invited] Boolean Network-Based Approaches towards Precisions Medicine [Invited] Boolean Network-Based Approaches towards Precisions Medicine [Invited] Workshop on Precision Network Medicine in the era of big data! (ICSB 2019) Workshop on Precision Network Medicine in the era of big data! (ICSB 2019) Workshop on Precision Network Medicine in the era of big data! (ICSB 2019) 2019/10/31 English Oral presentation(invited, special) Disclose to all
生体ネットワーク制御の ための数理モデル[Invited] 生体ネットワーク制御の ための数理モデル [Invited] 生命情報科学若手の会 第11回研究会 生命情報科学若手の会 第11回研究会 2019/10/19 Japanese Oral presentation(invited, special) Disclose to all
Boolean Network-based Approaches for Controlling Genetic Networks and Metabolic Networks[Invited] Boolean Network-based Approaches for Controlling Genetic Networks and Metabolic Networks [Invited] Boolean Network-based Approaches for Controlling Genetic Networks and Metabolic Networks [Invited] International Symposium on the Genetics of Industrial Microorganisms (GIM 2019) International Symposium on the Genetics of Industrial Microorganisms (GIM 2019) International Symposium on the Genetics of Industrial Microorganisms (GIM 2019) 2019/09/09 English Oral presentation(invited, special) Disclose to all
Python と Scikit-learn によるバイオインフォマティクスデータ解析[Invited] Python と Scikit-learn によるバイオインフォマティクスデータ解析 [Invited] データサイエンススクール 2019 -京都大学データサイエンス教育公開ワークショップ- データサイエンススクール 2019 -京都大学データサイエンス教育公開ワークショップ- 2019/08/02 Japanese Public discourse, seminar, tutorial, course, lecture and others Disclose to all
Graph theoretic approaches to controllability of biological networks[Invited] Graph theoretic approaches to controllability of biological networks [Invited] Graph theoretic approaches to controllability of biological networks [Invited] Workshop on Bioinformatics and Data Analysis Workshop on Bioinformatics and Data Analysis Workshop on Bioinformatics and Data Analysis 2019/06/15 English Oral presentation(keynote) Disclose to all
A Method for Analyzing Single Cell Expression Data Based on PCA, Gaussian Mixture Model, and Kullback–Leibler Divergence[Invited] A Method for Analyzing Single Cell Expression Data Based on PCA, Gaussian Mixture Model, and Kullback–Leibler Divergence [Invited] A Method for Analyzing Single Cell Expression Data Based on PCA, Gaussian Mixture Model, and Kullback–Leibler Divergence [Invited] Japan-Germany International Workshop 2019-1 The Human Cell Type Authentication Initiative Japan-Germany International Workshop 2019-1 The Human Cell Type Authentication Initiative Japan-Germany International Workshop 2019-1 The Human Cell Type Authentication Initiative 2019/05/15 English Oral presentation(invited, special) Disclose to all
細胞種情報解析における数理モデル概説[Invited] 細胞種情報解析における数理モデル概説 [Invited] 第1回 幹細胞情報学イニシアチブ研究会 第1回 幹細胞情報学イニシアチブ研究会 2019/05/10 Japanese Oral presentation(invited, special) Disclose to all
A mixed integer linear programming formulation to artificial neural networks A mixed integer linear programming formulation to artificial neural networks A mixed integer linear programming formulation to artificial neural networks 2nd International Conference on Information Science and System 2nd International Conference on Information Science and Systems 2nd International Conference on Information Science and System 2019/03/17 English Oral presentation(general) Disclose to all
確率ブーリアンネットワークの部分例の出現頻度からの同定可能性について 確率ブーリアンネットワークの部分例の出現頻度からの同定可能性について 第109回人工知能基本問題研究会 第109回人工知能基本問題研究会 2019/03/14 Japanese Oral presentation(general) Disclose to all
バイオインフォマティクスにおけるデータサイエンス バイオインフォマティクスにおけるデータサイエンス Data Science Spring School 2019 Data Science Spring School 2019 2019/02/27 Japanese Public discourse, seminar, tutorial, course, lecture and others Disclose to all
Integration and Analysis of Heterogeneous Biological Data via Convolutional Neural Networks and Matrix Factorization[Invited] Integration and Analysis of Heterogeneous Biological Data via Convolutional Neural Networks and Matrix Factorization [Invited] Integration and Analysis of Heterogeneous Biological Data via Convolutional Neural Networks and Matrix Factorization [Invited] 9th International Conference on Bioscience, Biochemistry and Bioinformatics 9th International Conference on Bioscience, Biochemistry and Bioinformatics 9th International Conference on Bioscience, Biochemistry and Bioinformatics 2019/01/08 English Oral presentation(keynote) Disclose to all
Algorithms for Analysis and Control of Boolean Networks[Invited] Algorithms for Analysis and Control of Boolean Networks [Invited] Algorithms for Analysis and Control of Boolean Networks [Invited] 5th International Conference on Algorithms for Computational Biology 5th International Conference on Algorithms for Computational Biology 5th International Conference on Algorithms for Computational Biology 2018/06/25 English Oral presentation(invited, special) Disclose to all
Minimum Dominating Set-based Approaches for Analyzing and Controlling Biological Networks Minimum Dominating Set-based Approaches for Analyzing and Controlling Biological Networks Minimum Dominating Set-based Approaches for Analyzing and Controlling Biological Networks 2016 Biotech and Pharmaceutical Service Platform - Biological Network Analysis Conference 2016 Biotech and Pharmaceutical Service Platform - Biological Network Analysis Conference 2016 Biotech and Pharmaceutical Service Platform - Biological Network Analysis Conference 2016/11/04 English Disclose to all
Minimum Dominating Set-Based Approaches for Controlling and Analyzing Biological Networks Minimum Dominating Set-Based Approaches for Controlling and Analyzing Biological Networks Minimum Dominating Set-Based Approaches for Controlling and Analyzing Biological Networks The 2016 (26th) Annual Meeting of the Japanese Society for Mathematical Biology The 2016 (26th) Annual Meeting of the Japanese Society for Mathematical Biology The 2016 (26th) Annual Meeting of the Japanese Society for Mathematical Biology 2016/09/07 English Oral presentation(invited, special) Disclose to all
Minimum Dominating Set-Based Approaches for Controlling and Analyzing Biological Networks Minimum Dominating Set-Based Approaches for Controlling and Analyzing Biological Networks Minimum Dominating Set-Based Approaches for Controlling and Analyzing Biological Networks Controlling Complex Network Systems in Biology (Workshop) Controlling Complex Network Systems in Biology (Workshop) Controlling Complex Network Systems in Biology (Workshop) 2016/09/05 English Oral presentation(invited, special) Disclose to all
Extensions and Applications of the Minimum Dominating Set-Based Approach to Controllability of Complex Networks Extensions and Applications of the Minimum Dominating Set-Based Approach to Controllability of Complex Networks Extensions and Applications of the Minimum Dominating Set-Based Approach to Controllability of Complex Networks Controlling Complex Networks (Satellite Symposium of International School and Conference on Network Science) Controlling Complex Networks (Satellite Symposium of International School and Conference on Network Science) Controlling Complex Networks (Satellite Symposium of International School and Conference on Network Science) 2016/05/30 English Oral presentation(invited, special) Disclose to all

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Title language:
Books etc
Author Author(Japanese) Author(English) Title Title(Japanese) Title(English) Publisher Publisher(Japanese) Publisher(English) Publication date Language Type Disclose
Tatsuya Akutsu 阿久津 達也 Tatsuya Akutsu Algorithms for Analysis, Inference, and Control of Boolean Networks Algorithms for Analysis, Inference, and Control of Boolean Networks Algorithms for Analysis, Inference, and Control of Boolean Networks World Scientific World Scientific World Scientific 2018/04 Single Work Disclose to all
Akutsu T Akutsu T Akutsu T Sequence alignment algorithms: Applications to glycans and trees and tree-like structures Sequence alignment algorithms: Applications to glycans and trees and tree-like structures Sequence alignment algorithms: Applications to glycans and trees and tree-like structures Handbook of Chemoinformatics Algorithms , , 363-381 Handbook of Chemoinformatics Algorithms , , 363-381 Handbook of Chemoinformatics Algorithms , , 363-381 2010 English Disclose to all
阿久津 達也 阿久津 達也 バイオインフォマティクス ー配列データ解析と構造予測ー バイオインフォマティクス ー配列データ解析と構造予測ー 朝倉書店 朝倉書店 2007/05 Disclose to all
丸山 修, 阿久津 達也 丸山 修, 阿久津 達也 バイオインフォマティクスの数理とアルゴリズム バイオインフォマティクスの数理とアルゴリズム 共立出版 共立出版 2007/02 Joint Work Disclose to all
阿久津 達也, 浅井 潔, 矢田 哲士 阿久津 達也, 浅井 潔, 矢田 哲士 バイオインフォマティクス ―確率モデルによる遺伝子配列解析ー バイオインフォマティクス ―確率モデルによる遺伝子配列解析ー 2001/03 Joint Translation Disclose to all
Title language:
Awards
Title(Japanese) Title(English) Organization name(Japanese) Organization name(English) Date
FIT奨励賞 FIT(情報科学技術フォーラム) 2014/09/05
Intech Award Diploma InTech (Open Access Publisher), 2014/10/26
SIGBIO功労賞 情報処理学会 バイオ情報学研究会 2014/12/18
2009 Oxford Journals - JSBi Bioinformatics Prize (Best Poster Award) The 20th International Conference on Genome Informatics 2009/12/16
SIGMPS功労賞 情報処理学会 数理モデル化と問題解決研究会 2006
2004 Oxford University Press Bioinformatics Prize (Best Poster Award) 15th International Conference on Genome Informatics 2004/12/15
情報処理学会フェロー Fellow, Information Processing Society of Japan 情報処理学会 Information Processing Society of Japan 2016/06/03
External funds: competitive funds and Grants-in-Aid for Scientific Research (Kakenhi)
Type Position Title(Japanese) Title(English) Period
基盤研究(A) Representative グラフ理論とカーネル法の融合による化学構造設計法 2007/04/01-2010/03/31
基盤研究(A) Representative 離散的手法とカーネル法の融合による構造設計法 2010/04/01-2014/03/31
萌芽研究 Representative 複雑生体構造のデータ圧縮を通じた発生原理の解明 2007/04/01-2010/03/31
萌芽研究 Representative 複雑生体ネットワークの離散モデルに基づく制御 2010/04/01-2013/03/31
特定領域研究 Representative 生物情報ネットワークの構造および動的挙動の数理解析 2005/04/01-2010/03/31
特別研究員奨励費 Representative -
基盤研究(B) Representative 構造を持つ生物情報データからの共通パターン抽出法 2004/04/01-2007/03/31
基盤研究(C) バイオインフォマティクスのための共通パターン抽出アルゴリズムの研究 2001/04/01-2004/03/31
生命システムの統合的理解のための生物情報ネットワークの構造および動的挙動解析 2005-
特別研究員奨励費 熱ショックタンパク質解析のための機械学習手法 2007-
挑戦的萌芽研究 Representative 複雑ネットワークに対する構造的に頑健な制御手法 (平成26年度分) 2014/04/01-2015/03/31
基盤研究(A) Representative 離散的手法と統計的手法の融合による構造設計法 (平成26年度分) 2014/04/01-2015/03/31
基盤研究(A) Representative 離散的手法と統計的手法の融合による構造設計法 (平成27年度分) 2015/04/01-2016/03/31
挑戦的萌芽研究 Representative 複雑ネットワークに対する構造的に頑健な制御手法 (平成27年度分) 2015/04/01-2016/03/31
挑戦的萌芽研究 Representative 複雑ネットワークに対する構造的に頑健な制御手法 (平成28年度分) 2016/04/01-2017/03/31
基盤研究(A) Representative 離散的手法と統計的手法の融合による構造設計法 (平成28年度分) 2016/04/01-2017/03/31
特別研究員奨励費 Representative データ融合によるタンパク質切断解析および疾患との関連性発見 (平成28年度分) 2016/04/01-2017/03/31
基盤研究(A) Representative 離散的手法と統計的手法の融合による構造設計法 (平成29年度分) 2017/04/01-2018/03/31
挑戦的萌芽研究 Representative 複雑ネットワークに対する構造的に頑健な制御手法 (平成29年度分) 2017/04/01-2018/03/31
特別研究員奨励費 Representative 汎がんモジュールとネットワーク解析による制御部分ネットワークの同定 (平成29年度分) 2017/04/01-2018/03/31
基盤研究(A) Representative 離散原像問題の解析と応用 (平成30年度分) 2018/04/01-2019/03/31
特別研究員奨励費 Representative 汎がんモジュールとネットワーク解析による制御部分ネットワークの同定 (平成30年度分) 2018/04/01-2019/03/31
特別研究員奨励費 Representative 汎がんモジュールとネットワーク解析による制御部分ネットワークの同定 (平成30年度分) 2018/04/01-2019/03/31
基盤研究(A) Representative 離散原像問題の解析と応用 (2019年度分) 2019/04/01-2020/03/31
特別研究員奨励費 Representative 汎がんモジュールとネットワーク解析による制御部分ネットワークの同定 (2019年度分) 2019/04/01-2020/03/31

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Teaching subject(s)
Name(Japanese) Name(English) Term Department Period
Advanced Study in IST I 通年 情報学研究科 2011/04-2012/03
Advanced Study in IST II 通年 情報学研究科 2011/04-2012/03
知能情報学特殊研究1 通年 情報学研究科 2011/04-2012/03
知能情報学特殊研究2 通年 情報学研究科 2011/04-2012/03
生命情報学 後期 工学部 2011/04-2012/03
知能情報学特別セミナー 通年 情報学研究科 2011/04-2012/03
生命情報学特別セミナー 後期 情報学研究科 2011/04-2012/03
システム生物情報学 System Bioinformatics 後期 全学共通科目 2011/04-2012/03
生命情報学入門 Introduction to Bioinformatics 前期 全学共通科目 2011/04-2012/03
生命情報学基礎論 前期 情報学研究科 2011/04-2012/03
生命情報学 Bioinformatics 後期 全学共通科目 2012/04-2013/03
生命情報学 Introduction to Computational Systems Bioinformatics 後期 工学部 2012/04-2013/03
生命情報学基礎論 Introduction to Bioinformatics 前期 情報学研究科 2012/04-2013/03
生命情報学特別セミナー Advanced Seminar on Gene Informatics 後期 情報学研究科 2012/04-2013/03
知能情報学特別セミナー Advanced Seminar on Intelligence Science and Technology 通年 情報学研究科 2012/04-2013/03
知能情報学特殊研究2 Advanced Study in Intelligence Science and Technology II 通年 情報学研究科 2012/04-2013/03
知能情報学特殊研究1 Advanced Study in Intelligence Science and Technology I 通年 情報学研究科 2012/04-2013/03
生命情報学 Introduction to Computational Systems Bioinformatics 後期 工学部 2013/04-2014/03
知能情報学特殊研究1 Advanced Study in Intelligence Science and Technology I 通年 情報学研究科 2013/04-2014/03
知能情報学特殊研究1 Advanced Study in Intelligence Science and Technology I 前期集中 情報学研究科 2013/04-2014/03
知能情報学特殊研究2 Advanced Study in Intelligence Science and Technology II 通年 情報学研究科 2013/04-2014/03
生命情報学基礎論 Introduction to Bioinformatics 前期 情報学研究科 2013/04-2014/03
知能情報学特別セミナー Advanced Seminar on Intelligence Science and Technology 通年 情報学研究科 2013/04-2014/03
生命情報学特別セミナー Advanced Seminar on Gene Informatics 後期 情報学研究科 2013/04-2014/03
生命情報学 Bioinformatics 後期 全学共通科目 2013/04-2014/03
生命情報学 Introduction to Computational Systems Bioinformatics 後期 工学部 2014/04-2015/03
知能情報学特殊研究 I Advanced Study in Intelligence Science and Technology I 通年 情報学研究科 2014/04-2015/03
知能情報学特殊研究1 Advanced Study in Intelligence Science and Technology I 通年 情報学研究科 2014/04-2015/03
知能情報学特殊研究2 Advanced Study in Intelligence Science and Technology II 通年 情報学研究科 2014/04-2015/03
生命情報学基礎論 Introduction to Bioinformatics 前期 情報学研究科 2014/04-2015/03
知能情報学特別セミナー Advanced Seminar on Intelligence Science and Technology 通年 情報学研究科 2014/04-2015/03
生命情報学特別セミナー Advanced Seminar on Gene Informatics 後期 情報学研究科 2014/04-2015/03
生命情報学 Bioinformatics 後期 全学共通科目 2014/04-2015/03
Advanced Study in IST I Advanced Study in Intelligence Science and Technology I 通年 情報学研究科 2014/04-2015/03
Advanced Study in IST II Advanced Study in Intelligence Science and Technology II 通年 情報学研究科 2014/04-2015/03
Advanced Study in IST I Advanced Study in Intelligence Science and Technology I 通年 情報学研究科 2015/04-2016/03
Advanced Study in IST II Advanced Study in Intelligence Science and Technology II 通年 情報学研究科 2015/04-2016/03
生命情報学 Introduction to Computational Systems Bioinformatics 後期 工学部 2015/04-2016/03
生命情報学基礎論 Introduction to Bioinformatics 前期 情報学研究科 2015/04-2016/03
生命情報学特別セミナー Advanced Seminar on Gene Informatics 後期 情報学研究科 2015/04-2016/03
知能情報学特別セミナー Advanced Seminar on Intelligence Science and Technology 通年 情報学研究科 2015/04-2016/03
知能情報学特殊研究2 Advanced Study in Intelligence Science and Technology II 前期集中 情報学研究科 2015/04-2016/03
知能情報学特殊研究2 Advanced Study in Intelligence Science and Technology II 通年 情報学研究科 2015/04-2016/03
知能情報学特殊研究1 Advanced Study in Intelligence Science and Technology I 通年 情報学研究科 2015/04-2016/03
知能情報学特殊研究 I Advanced Study in Intelligence Science and Technology I 通年 情報学研究科 2015/04-2016/03
計算科学が拓く世界 Introduction to Computational Science 後期 全学共通科目 2015/04-2016/03
Advanced Study in IST I Advanced Study in Intelligence Science and Technology I 通年 情報学研究科 2016/04-2017/03
Advanced Study in IST II Advanced Study in Intelligence Science and Technology II 通年 情報学研究科 2016/04-2017/03
生命情報学 Introduction to Computational Systems Bioinformatics 後期 工学部 2016/04-2017/03
生命情報学基礎論 Introduction to Bioinformatics 前期 情報学研究科 2016/04-2017/03
生命情報学特別セミナー Advanced Seminar on Gene Informatics 後期 情報学研究科 2016/04-2017/03
生命情報学特論 Bioinformatics, Adv. 後期 情報学研究科 2016/04-2017/03
知能情報学特別セミナー Advanced Seminar on Intelligence Science and Technology 通年 情報学研究科 2016/04-2017/03
知能情報学特殊研究2 Advanced Study in Intelligence Science and Technology II 通年 情報学研究科 2016/04-2017/03
知能情報学特殊研究1 Advanced Study in Intelligence Science and Technology I 通年 情報学研究科 2016/04-2017/03
知能情報学特殊研究 I Advanced Study in Intelligence Science and Technology I 通年 情報学研究科 2016/04-2017/03
計算科学が拓く世界 Introduction to Computational Science 後期 全学共通科目 2016/04-2017/03
Advanced Study in IST I Advanced Study in Intelligence Science and Technology I 通年 情報学研究科 2017/04-2018/03
Advanced Study in IST II Advanced Study in Intelligence Science and Technology II 通年 情報学研究科 2017/04-2018/03
生命情報学 Introduction to Computational Systems Bioinformatics 後期 工学部 2017/04-2018/03
生命情報学基礎論 Introduction to Bioinformatics 前期 情報学研究科 2017/04-2018/03
生命情報学特別セミナー Advanced Seminar on Gene Informatics 後期 情報学研究科 2017/04-2018/03
生命情報学特論 Bioinformatics, Adv. 後期 情報学研究科 2017/04-2018/03
知能情報学特別セミナー Advanced Seminar on Intelligence Science and Technology 通年 情報学研究科 2017/04-2018/03
知能情報学特殊研究2 Advanced Study in Intelligence Science and Technology II 通年 情報学研究科 2017/04-2018/03
知能情報学特殊研究1 Advanced Study in Intelligence Science and Technology I 通年 情報学研究科 2017/04-2018/03
計算科学が拓く世界 Introduction to Computational Science 前期 全学共通科目 2017/04-2018/03
生命情報学 Introduction to Computational Systems Bioinformatics 前期 工学部 2018/04-2019/03
生命情報学基礎論 Introduction to Bioinformatics 前期 情報学研究科 2018/04-2019/03
生命情報学特論 Bioinformatics, Adv. 後期 情報学研究科 2018/04-2019/03
生命情報学 Introduction to Computational Systems Bioinformatics 前期 工学部 2019/04-2020/03
生命情報学基礎論 Introduction to Bioinformatics 前期 情報学研究科 2019/04-2020/03
生命情報学特論 Bioinformatics, Adv. 後期 情報学研究科 2019/04-2020/03
生命情報学 Introduction to Computational Systems Bioinformatics 前期 工学部 2020/04-2021/03
生命情報学基礎論 Introduction to Bioinformatics 前期 情報学研究科 2020/04-2021/03
生命情報学特論 Bioinformatics, Adv. 後期 情報学研究科 2020/04-2021/03

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School management (title, position)
Title Period
化学研究所附属バイオインフォマティクスセンター長 2013/04/01-2015/03/31
大学評価委員会点検・評価実行委員会 委員 2014/10/01-2018/03/31
化学研究所附属バイオインフォマティクスセンター長 2017/04/01-2019/03/31
Faculty management (title, position)
Title Period
学術情報メディアセンター全国共同利用運営委員会 委員 2006/04/01-2008/03/31
化学研究所ゲノムネット推進室運営委員会 委員 2011/04/01-
化学研究所運営委員会 委員 2013/04/01-2014/03/31
化学研究所建物管理委員会 委員 2013/04/01-2014/03/31
化学研究所自己点検評価委員会 委員 2013/04/01-2014/03/31
化学研究所情報システム技術委員会 委員長 2013/04/01-2014/03/31
化学研究所情報セキュリティ委員会 委員 2013/04/01-2014/03/31
研究用計算機専門委員会 委員 2013/07/01-2015/06/30
化学研究所運営委員会 委員 2014/04/01-2015/03/31
化学研究所建物管理委員会 委員 2014/04/01-2015/03/31
化学研究所自己点検評価委員会 委員 2014/04/01-2015/03/31
化学研究所情報システム技術委員会 委員 2014/04/01-2015/03/31
化学研究所情報セキュリティ委員会 委員長 2014/04/01-2015/03/31
学術情報メディアセンター全国共同利用運営委員会 委員 2014/04/01-2016/03/31
化学研究所ゲノムネット推進室運営委員会 委員 2015/04/01-2017/03/31
化学研究所建物管理委員会 委員 2015/04/01-2016/03/31
化学研究所情報システム技術委員会 委員長 2015/04/01-2016/03/31
化学研究所情報セキュリティ委員会 副委員長 2015/04/01-2016/03/31
研究用計算機専門委員会 委員 2015/07/01-2018/03/31
化学研究所講演委員会 委員長 2016/04/01-2017/03/31
化学研究所情報システム技術委員会 委員長 2016/04/01-2017/03/31
化学研究所情報セキュリティ委員会 副委員長 2016/04/01-2017/03/31
化学研究所設備運営委員会 委員 2016/04/01-2017/03/31
化学研究所ゲノムネット推進室運営委員会 委員 2017/04/01-2019/03/31
化学研究所運営委員会 委員 2017/04/01-2018/03/31
化学研究所建物管理委員会 委員 2017/04/01-2018/03/31
化学研究所自己点検評価委員会 委員 2017/04/01-2018/03/31
化学研究所情報システム技術委員会 委員長 2017/04/01-2018/03/31
化学研究所情報セキュリティ委員会 副委員長 2017/04/01-2018/03/31
化学研究所運営委員会 委員 2018/04/01-2019/03/31
化学研究所自己点検評価委員会 委員 2018/04/01-2019/03/31
化学研究所情報システム技術委員会 委員長 2018/04/01-2019/03/31
化学研究所情報セキュリティ委員会 副委員長 2018/04/01-2019/03/31
化学研究所自己点検評価委員会 委員 2019/04/01-2020/03/31
化学研究所将来問題・研究活性化委員会 委員 2019/04/01-2020/03/31
化学研究所情報システム技術委員会 委員長 2019/04/01-2020/03/31
化学研究所情報セキュリティ委員会 副委員長 2019/04/01-2020/03/31
化学研究所ゲノムネット推進室運営委員会委員 2020/04/01-2022/03/31
化学研究所情報システム技術委員会委員長 2020/04/01-2021/03/31
化学研究所情報セキュリティ委員会副委員長 2020/04/01-2021/03/31

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Academic organizaions (other)
Organization name(Japanese) Organization name(English) Misc(Japanese) Misc(English) Period
電子情報通信学会 コンピュテーション研究会副委員長 2004/04/01-2006/03/31
情報処理学会 バイオ情報学研究会主査 2007/04/01-2009/03/31
情報処理学会 論文誌編集委員会基礎理論WG主査 2000/04/01-2001/03/31
情報処理学会 バイオ情報学研究会運営委員 2015/04/01-2019/03/31
Other activities (public organizations)
Committee(Japanese) Committee(English) Title Organization name Period
(独)日本学術振興会 特別研究員等審査会及び国際事業委員会 専門委員及び書面審査員 2010-
(独)日本学術振興会 特別研究員等審査会及び国際事業委員会 専門委員及び書面審査員 2011-