Wang F, Akutsu T, Mori T |
Wang F, Akutsu T, Mori T |
Wang F, Akutsu T, Mori T |
Comparison of pseudoknotted RNA secondary structures by topological centroid identification and tree edit distance |
Comparison of pseudoknotted RNA secondary structures by topological centroid identification and tree edit distance |
Comparison of pseudoknotted RNA secondary structures by topological centroid identification and tree edit distance |
Journal of Computational Biology, 27, 1-9 |
Journal of Computational Biology, 27, 1-9 |
Journal of Computational Biology, 27, 1-9 |
2020 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Tomoya Mori, Haruka Takaoka, Junko Yamane, Cantas Alev, Wataru Fujibuchi |
Tomoya Mori, Haruka Takaoka, Junko Yamane, Cantas Alev, Wataru Fujibuchi |
Tomoya Mori, Haruka Takaoka, Junko Yamane, Cantas Alev, Wataru Fujibuchi |
Novel computational model of gastrula morphogenesis to identify spatial discriminator genes by self-organizing map (SOM) clustering. |
Novel computational model of gastrula morphogenesis to identify spatial discriminator genes by self-organizing map (SOM) clustering. |
Novel computational model of gastrula morphogenesis to identify spatial discriminator genes by self-organizing map (SOM) clustering. |
Scientific reports, 9, 1, 12597-12597 |
Scientific reports, 9, 1, 12597-12597 |
Scientific reports, 9, 1, 12597-12597 |
2019/08/29 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Takuya Mori, Hayliang Ngouv, Morihiro Hayashida, Tatsuya Akutsu, Jose C. Nacher |
Takuya Mori, Hayliang Ngouv, Morihiro Hayashida, Tatsuya Akutsu, Jose C. Nacher |
Takuya Mori, Hayliang Ngouv, Morihiro Hayashida, Tatsuya Akutsu, Jose C. Nacher |
ncRNA-disease association prediction based on sequence information and tripartite network  |
ncRNA-disease association prediction based on sequence information and tripartite network  |
ncRNA-disease association prediction based on sequence information and tripartite network  |
BMC Systems Biology, 12, Suppl 1, 37 |
BMC Systems Biology, 12, Suppl 1, 37 |
BMC Systems Biology, 12, Suppl 1, 37 |
2018/04/11 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Liu L, Mori T, Zhao Y, Hayashida M, Akutsu T |
Liu L, Mori T, Zhao Y, Hayashida M, Akutsu T |
Liu L, Mori T, Zhao Y, Hayashida M, Akutsu T |
Euler string-based compression of tree-structured data and its application to analysis of RNAs |
Euler string-based compression of tree-structured data and its application to analysis of RNAs |
Euler string-based compression of tree-structured data and its application to analysis of RNAs |
Current Bioinformatics, 13, 1, 25-33 |
Current Bioinformatics, 13, 1, 25-33 |
Current Bioinformatics, 13, 1, 25-33 |
2018 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Yuki Kato, Tomoya Mori, Kengo Sato, Shingo Maegawa, Hiroshi Hosokawa, Tatsuya Akutsu |
Yuki Kato, Tomoya Mori, Kengo Sato, Shingo Maegawa, Hiroshi Hosokawa, Tatsuya Akutsu |
Yuki Kato, Tomoya Mori, Kengo Sato, Shingo Maegawa, Hiroshi Hosokawa, Tatsuya Akutsu |
An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data |
An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data |
An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data |
BIOINFORMATICS, 33, 2, 202-209 |
BIOINFORMATICS, 33, 2, 202-209 |
BIOINFORMATICS, 33, 2, 202-209 |
2017/01 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Yamane J, Mori T, Taniyama N, Kobayashi K, Fujibuchi W |
Yamane J, Mori T, Taniyama N, Kobayashi K, Fujibuchi W |
Yamane J, Mori T, Taniyama N, Kobayashi K, Fujibuchi W |
Development of enhanced reduced representation bisulfite sequencing method for single-cell methylome analysis |
Development of enhanced reduced representation bisulfite sequencing method for single-cell methylome analysis |
Development of enhanced reduced representation bisulfite sequencing method for single-cell methylome analysis |
Genomics and Computational Biology, 3, 2, e49 |
Genomics and Computational Biology, 3, 2, e49 |
Genomics and Computational Biology, 3, 2, e49 |
2017 |
Refereed |
English |
Research paper(international conference proceedings) |
Disclose to all |
Mori T, Yamane J, Kobayashi K, Taniyama N, Tano T, Fujibuchi W |
Mori T, Yamane J, Kobayashi K, Taniyama N, Tano T, Fujibuchi W |
Mori T, Yamane J, Kobayashi K, Taniyama N, Tano T, Fujibuchi W |
Development of 3D tissue reconstruction method from single-cell RNA-seq data |
Development of 3D tissue reconstruction method from single-cell RNA-seq data |
Development of 3D tissue reconstruction method from single-cell RNA-seq data |
Genomics and Computational Biology, 3, 1, e53 |
Genomics and Computational Biology, 3, 1, e53 |
Genomics and Computational Biology, 3, 1, e53 |
2017 |
Refereed |
English |
Research paper(international conference proceedings) |
Disclose to all |
Xiaoqing Cheng, Tomoya Mori, Yushan Qiu, Wai-Ki Ching, Tatsuya Akutsu |
Xiaoqing Cheng, Tomoya Mori, Yushan Qiu, Wai-Ki Ching, Tatsuya Akutsu |
Xiaoqing Cheng, Tomoya Mori, Yushan Qiu, Wai-Ki Ching, Tatsuya Akutsu |
Exact Identification of the Structure of a Probabilistic Boolean Network from Samples  |
Exact Identification of the Structure of a Probabilistic Boolean Network from Samples  |
Exact Identification of the Structure of a Probabilistic Boolean Network from Samples  |
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 13, 6, 1107-1116 |
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 13, 6, 1107-1116 |
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 13, 6, 1107-1116 |
2016/11 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Takanori Hasegawa, Atsushi Niida, Tomoya Mori, Teppei Shimamura, Rui Yamaguchi, Satoru Miyano, Tatsuya Akutsu, Seiya Imoto |
Takanori Hasegawa, Atsushi Niida, Tomoya Mori, Teppei Shimamura, Rui Yamaguchi, Satoru Miyano, Tatsuya Akutsu, Seiya Imoto |
Takanori Hasegawa, Atsushi Niida, Tomoya Mori, Teppei Shimamura, Rui Yamaguchi, Satoru Miyano, Tatsuya Akutsu, Seiya Imoto |
A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models |
A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models |
A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models |
COMPUTATIONAL STATISTICS & DATA ANALYSIS, 94, 63-74 |
COMPUTATIONAL STATISTICS & DATA ANALYSIS, 94, 63-74 |
COMPUTATIONAL STATISTICS & DATA ANALYSIS, 94, 63-74 |
2016/02 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Tomoya Mori, Atsuhiro Takasu, Jesper Jansson, Jaewook Hwang, Takeyuki Tamura, Tatsuya Akutsu |
Tomoya Mori, Atsuhiro Takasu, Jesper Jansson, Jaewook Hwang, Takeyuki Tamura, Tatsuya Akutsu |
Tomoya Mori, Atsuhiro Takasu, Jesper Jansson, Jaewook Hwang, Takeyuki Tamura, Tatsuya Akutsu |
Similar Subtree Search Using Extended Tree Inclusion |
Similar Subtree Search Using Extended Tree Inclusion |
Similar Subtree Search Using Extended Tree Inclusion |
2016 32ND IEEE INTERNATIONAL CONFERENCE ON DATA ENGINEERING (ICDE), 1558-1559 |
2016 32ND IEEE INTERNATIONAL CONFERENCE ON DATA ENGINEERING (ICDE), 1558-1559 |
2016 32ND IEEE INTERNATIONAL CONFERENCE ON DATA ENGINEERING (ICDE), 1558-1559 |
2016 |
Refereed |
English |
Research paper(international conference proceedings) |
Disclose to all |
Tomoya Mori, Atsuhiro Takasu, Jesper Jansson, Jaewook Hwang, Takeyuki Tamura, Tatsuya Akutsu |
Tomoya Mori, Atsuhiro Takasu, Jesper Jansson, Jaewook Hwang, Takeyuki Tamura, Tatsuya Akutsu |
Tomoya Mori, Atsuhiro Takasu, Jesper Jansson, Jaewook Hwang, Takeyuki Tamura, Tatsuya Akutsu |
Similar Subtree Search Using Extended Tree Inclusion |
Similar Subtree Search Using Extended Tree Inclusion |
Similar Subtree Search Using Extended Tree Inclusion |
IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING, 27, 12, 3360-3373 |
IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING, 27, 12, 3360-3373 |
IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING, 27, 12, 3360-3373 |
2015/12 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Tomoya Mori, Max Flottmann, Marcus Krantz, Tatsuya Akutsu, Edda Klipp |
Tomoya Mori, Max Flottmann, Marcus Krantz, Tatsuya Akutsu, Edda Klipp |
Tomoya Mori, Max Flottmann, Marcus Krantz, Tatsuya Akutsu, Edda Klipp |
Stochastic simulation of Boolean rxncon models: towards quantitative analysis of large signaling networks  |
Stochastic simulation of Boolean rxncon models: towards quantitative analysis of large signaling networks  |
Stochastic simulation of Boolean rxncon models: towards quantitative analysis of large signaling networks  |
BMC SYSTEMS BIOLOGY, 9, 45, 9 pages |
BMC SYSTEMS BIOLOGY, 9, 45, 9 pages |
BMC SYSTEMS BIOLOGY, 9, 45, 9 pages |
2015/08 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Takanori Hasegawa, Tomoya Mori, Rui Yamaguchi, Teppei Shimamura, Satoru Miyano, Seiya Imoto, Tatsuya Akutsu |
Takanori Hasegawa, Tomoya Mori, Rui Yamaguchi, Teppei Shimamura, Satoru Miyano, Seiya Imoto, Tatsuya Akutsu |
Takanori Hasegawa, Tomoya Mori, Rui Yamaguchi, Teppei Shimamura, Satoru Miyano, Seiya Imoto, Tatsuya Akutsu |
Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks  |
Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks  |
Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks  |
BMC SYSTEMS BIOLOGY, 9, 14, 13 pages |
BMC SYSTEMS BIOLOGY, 9, 14, 13 pages |
BMC SYSTEMS BIOLOGY, 9, 14, 13 pages |
2015/03 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Takanori Hasegawa, Tomoya Mori, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, Tatsuya Akutsu |
Takanori Hasegawa, Tomoya Mori, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, Tatsuya Akutsu |
Takanori Hasegawa, Tomoya Mori, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, Tatsuya Akutsu |
An Efficient Data Assimilation Schema for Restoration and Extension of Gene Regulatory Networks Using Time-Course Observation Data |
An Efficient Data Assimilation Schema for Restoration and Extension of Gene Regulatory Networks Using Time-Course Observation Data |
An Efficient Data Assimilation Schema for Restoration and Extension of Gene Regulatory Networks Using Time-Course Observation Data |
JOURNAL OF COMPUTATIONAL BIOLOGY, 21, 11, 785-798 |
JOURNAL OF COMPUTATIONAL BIOLOGY, 21, 11, 785-798 |
JOURNAL OF COMPUTATIONAL BIOLOGY, 21, 11, 785-798 |
2014/11 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Tomoya Mori, Takeyuki Tamura, Daiji Fukagawa, Atsuhiro Takasu, Etsuji Tomita, Tatsuya Akutsu |
Tomoya Mori, Takeyuki Tamura, Daiji Fukagawa, Atsuhiro Takasu, Etsuji Tomita, Tatsuya Akutsu |
Tomoya Mori, Takeyuki Tamura, Daiji Fukagawa, Atsuhiro Takasu, Etsuji Tomita, Tatsuya Akutsu |
A Clique-Based Method Using Dynamic Programming for Computing Edit Distance Between Unordered Trees  |
A Clique-Based Method Using Dynamic Programming for Computing Edit Distance Between Unordered Trees  |
A Clique-Based Method Using Dynamic Programming for Computing Edit Distance Between Unordered Trees  |
JOURNAL OF COMPUTATIONAL BIOLOGY, 19, 10, 1089-1104 |
JOURNAL OF COMPUTATIONAL BIOLOGY, 19, 10, 1089-1104 |
JOURNAL OF COMPUTATIONAL BIOLOGY, 19, 10, 1089-1104 |
2012/10 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |