長﨑 正朗

最終更新日時: 2019/05/22 14:09:20

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氏名(漢字/フリガナ/アルファベット表記)
長﨑 正朗/ナガサキ マサオ/Nagasaki, Masao
所属部署・職名(部局/所属/講座等/職名)
学際融合教育研究推進センター/スーパーグローバルコース医学生命系ユニット/特定教授
取得学位
学位名(日本語) 学位名(英語) 大学(日本語) 大学(英語) 取得区分
修士(理学) 東京大学
博士(理学) 東京大学
researchmap URL
https://researchmap.jp/m.nagasaki
論文
著者 著者(日本語) 著者(英語) タイトル タイトル(日本語) タイトル(英語) 書誌情報等 書誌情報等(日本語) 書誌情報等(英語) 出版年月 査読の有無 記述言語 掲載種別 公開
Watanabe T, Saito T, Rico EMG, Hishinuma E, Kumondai M, Maekawa M, Oda A, Saigusa D, Saito S, Yasuda J, Nagasaki M, Minegishi N, Yamamoto M, Yamaguchi H, Mano N, Hirasawa N, Hiratsuka M Watanabe T, Saito T, Rico EMG, Hishinuma E, Kumondai M, Maekawa M, Oda A, Saigusa D, Saito S, Yasuda J, Nagasaki M, Minegishi N, Yamamoto M, Yamaguchi H, Mano N, Hirasawa N, Hiratsuka M Watanabe T, Saito T, Rico EMG, Hishinuma E, Kumondai M, Maekawa M, Oda A, Saigusa D, Saito S, Yasuda J, Nagasaki M, Minegishi N, Yamamoto M, Yamaguchi H, Mano N, Hirasawa N, Hiratsuka M Functional characterization of 40 CYP2B6 allelic variants by assessing efavirenz 8-hydroxylation. Functional characterization of 40 CYP2B6 allelic variants by assessing efavirenz 8-hydroxylation. Functional characterization of 40 CYP2B6 allelic variants by assessing efavirenz 8-hydroxylation. Biochemical pharmacology, 156,  , 420-430 Biochemical pharmacology, 156,  , 420-430 Biochemical pharmacology, 156,  , 420-430 2018/09 英語 研究論文(学術雑誌) 公開
Jia X, Horinouchi T, Hitomi Y, Shono A, Khor SS, Omae Y, Kojima K, Kawai Y, Nagasaki M, Kaku Y, Okamoto T, Ohwada Y, Ohta K, Okuda Y, Fujimaru R, Hatae K, Kumagai N, Sawanobori E, Nakazato H, Ohtsuka Y, Nakanishi K, Shima Y, Tanaka R, Ashida A, Kamei K, Ishikura K, Nozu K, Tokunaga K, Iijima K, Research Consortium on Genetics of Childhood Idiopathic Nephrotic Syndrome in Japan. Jia X, Horinouchi T, Hitomi Y, Shono A, Khor SS, Omae Y, Kojima K, Kawai Y, Nagasaki M, Kaku Y, Okamoto T, Ohwada Y, Ohta K, Okuda Y, Fujimaru R, Hatae K, Kumagai N, Sawanobori E, Nakazato H, Ohtsuka Y, Nakanishi K, Shima Y, Tanaka R, Ashida A, Kamei K, Ishikura K, Nozu K, Tokunaga K, Iijima K, Research Consortium on Genetics of Childhood Idiopathic Nephrotic Syndrome in Japan. Jia X, Horinouchi T, Hitomi Y, Shono A, Khor SS, Omae Y, Kojima K, Kawai Y, Nagasaki M, Kaku Y, Okamoto T, Ohwada Y, Ohta K, Okuda Y, Fujimaru R, Hatae K, Kumagai N, Sawanobori E, Nakazato H, Ohtsuka Y, Nakanishi K, Shima Y, Tanaka R, Ashida A, Kamei K, Ishikura K, Nozu K, Tokunaga K, Iijima K, Research Consortium on Genetics of Childhood Idiopathic Nephrotic Syndrome in Japan. Strong Association of the <i>HLA-DR/DQ</i> Locus with Childhood Steroid-Sensitive Nephrotic Syndrome in the Japanese Population. Strong Association of the <i>HLA-DR/DQ</i> Locus with Childhood Steroid-Sensitive Nephrotic Syndrome in the Japanese Population. Strong Association of the <i>HLA-DR/DQ</i> Locus with Childhood Steroid-Sensitive Nephrotic Syndrome in the Japanese Population. Journal of the American Society of Nephrology : JASN, 29, 8, 2189-2199 Journal of the American Society of Nephrology : JASN, 29, 8, 2189-2199 Journal of the American Society of Nephrology : JASN, 29, 8, 2189-2199 2018/08 英語 研究論文(学術雑誌) 公開
Hishinuma E, Narita Y, Saito S, Maekawa M, Akai F, Nakanishi Y, Yasuda J, Nagasaki M, Yamamoto M, Yamaguchi H, Mano N, Hirasawa N, Hiratsuka M Hishinuma E, Narita Y, Saito S, Maekawa M, Akai F, Nakanishi Y, Yasuda J, Nagasaki M, Yamamoto M, Yamaguchi H, Mano N, Hirasawa N, Hiratsuka M Hishinuma E, Narita Y, Saito S, Maekawa M, Akai F, Nakanishi Y, Yasuda J, Nagasaki M, Yamamoto M, Yamaguchi H, Mano N, Hirasawa N, Hiratsuka M Functional Characterization of 21 Allelic Variants of Dihydropyrimidine Dehydrogenase Identified in 1070 Japanese Individuals. Functional Characterization of 21 Allelic Variants of Dihydropyrimidine Dehydrogenase Identified in 1070 Japanese Individuals. Functional Characterization of 21 Allelic Variants of Dihydropyrimidine Dehydrogenase Identified in 1070 Japanese Individuals. Drug metabolism and disposition: the biological fate of chemicals, 46, 8, 1083-1090 Drug metabolism and disposition: the biological fate of chemicals, 46, 8, 1083-1090 Drug metabolism and disposition: the biological fate of chemicals, 46, 8, 1083-1090 2018/08 英語 研究論文(学術雑誌) 公開
Kumondai M, Ito A, Hishinuma E, Kikuchi A, Saito T, Takahashi M, Tsukada C, Saito S, Yasuda J, Nagasaki M, Minegishi N, Yamamoto M, Kaneko A, Teramoto I, Kimura M, Hirasawa N, Hiratsuka M Kumondai M, Ito A, Hishinuma E, Kikuchi A, Saito T, Takahashi M, Tsukada C, Saito S, Yasuda J, Nagasaki M, Minegishi N, Yamamoto M, Kaneko A, Teramoto I, Kimura M, Hirasawa N, Hiratsuka M Kumondai M, Ito A, Hishinuma E, Kikuchi A, Saito T, Takahashi M, Tsukada C, Saito S, Yasuda J, Nagasaki M, Minegishi N, Yamamoto M, Kaneko A, Teramoto I, Kimura M, Hirasawa N, Hiratsuka M Development and application of a rapid and sensitive genotyping method for pharmacogene variants using the single-stranded tag hybridization chromatographic printed-array strip (STH-PAS). Development and application of a rapid and sensitive genotyping method for pharmacogene variants using the single-stranded tag hybridization chromatographic printed-array strip (STH-PAS). Development and application of a rapid and sensitive genotyping method for pharmacogene variants using the single-stranded tag hybridization chromatographic printed-array strip (STH-PAS). Drug metabolism and pharmacokinetics,  ,  , epub-epub Drug metabolism and pharmacokinetics,  ,  , epub-epub Drug metabolism and pharmacokinetics,  ,  , epub-epub 2018/08 英語 研究論文(学術雑誌) 公開
Yasuda J, Katsuoka F, Danjoh I, Kawai Y, Kojima K, Nagasaki M, Saito S, Yamaguchi-Kabata Y, Tadaka S, Motoike IN, Kumada K, Sakurai-Yageta M, Tanabe O, Fuse N, Tamiya G, Higasa K, Matsuda F, Yasuda N, Iwasaki M, Sasaki M, Shimizu A, Kinoshita K, Yamamoto M Yasuda J, Katsuoka F, Danjoh I, Kawai Y, Kojima K, Nagasaki M, Saito S, Yamaguchi-Kabata Y, Tadaka S, Motoike IN, Kumada K, Sakurai-Yageta M, Tanabe O, Fuse N, Tamiya G, Higasa K, Matsuda F, Yasuda N, Iwasaki M, Sasaki M, Shimizu A, Kinoshita K, Yamamoto M Yasuda J, Katsuoka F, Danjoh I, Kawai Y, Kojima K, Nagasaki M, Saito S, Yamaguchi-Kabata Y, Tadaka S, Motoike IN, Kumada K, Sakurai-Yageta M, Tanabe O, Fuse N, Tamiya G, Higasa K, Matsuda F, Yasuda N, Iwasaki M, Sasaki M, Shimizu A, Kinoshita K, Yamamoto M Regional genetic differences among Japanese populations and performance of genotype imputation using whole-genome reference panel of the Tohoku Medical Megabank Project. Regional genetic differences among Japanese populations and performance of genotype imputation using whole-genome reference panel of the Tohoku Medical Megabank Project. Regional genetic differences among Japanese populations and performance of genotype imputation using whole-genome reference panel of the Tohoku Medical Megabank Project. BMC genomics, 19, 1, 551-551 BMC genomics, 19, 1, 551-551 BMC genomics, 19, 1, 551-551 2018/07 英語 研究論文(学術雑誌) 公開
Kakuta Y, Kawai Y, Okamoto D, Takagawa T, Ikeya K, Sakuraba H, Nishida A, Nakagawa S, Miura M, Toyonaga T, Onodera K, Shinozaki M, Ishiguro Y, Mizuno S, Takahara M, Yanai S, Hokari R, Nakagawa T, Araki H, Motoya S, Naito T, Moroi R, Shiga H, Endo K, Kobayashi T, Naganuma M, Hiraoka S, Matsumoto T, Nakamura S, Nakase H, Hisamatsu T, Sasaki M, Hanai H, Andoh A, Nagasaki M, Kinouchi Y, Shimosegawa T, Masamune A, Suzuki Y, MENDEL study group. Kakuta Y, Kawai Y, Okamoto D, Takagawa T, Ikeya K, Sakuraba H, Nishida A, Nakagawa S, Miura M, Toyonaga T, Onodera K, Shinozaki M, Ishiguro Y, Mizuno S, Takahara M, Yanai S, Hokari R, Nakagawa T, Araki H, Motoya S, Naito T, Moroi R, Shiga H, Endo K, Kobayashi T, Naganuma M, Hiraoka S, Matsumoto T, Nakamura S, Nakase H, Hisamatsu T, Sasaki M, Hanai H, Andoh A, Nagasaki M, Kinouchi Y, Shimosegawa T, Masamune A, Suzuki Y, MENDEL study group. Kakuta Y, Kawai Y, Okamoto D, Takagawa T, Ikeya K, Sakuraba H, Nishida A, Nakagawa S, Miura M, Toyonaga T, Onodera K, Shinozaki M, Ishiguro Y, Mizuno S, Takahara M, Yanai S, Hokari R, Nakagawa T, Araki H, Motoya S, Naito T, Moroi R, Shiga H, Endo K, Kobayashi T, Naganuma M, Hiraoka S, Matsumoto T, Nakamura S, Nakase H, Hisamatsu T, Sasaki M, Hanai H, Andoh A, Nagasaki M, Kinouchi Y, Shimosegawa T, Masamune A, Suzuki Y, MENDEL study group. NUDT15 codon 139 is the best pharmacogenetic marker for predicting thiopurine-induced severe adverse events in Japanese patients with inflammatory bowel disease: a multicenter study. NUDT15 codon 139 is the best pharmacogenetic marker for predicting thiopurine-induced severe adverse events in Japanese patients with inflammatory bowel disease: a multicenter study. NUDT15 codon 139 is the best pharmacogenetic marker for predicting thiopurine-induced severe adverse events in Japanese patients with inflammatory bowel disease: a multicenter study. Journal of gastroenterology,  ,  , epub-epub Journal of gastroenterology,  ,  , epub-epub Journal of gastroenterology,  ,  , epub-epub 2018/06 英語 研究論文(学術雑誌) 公開
Ueno K, Iwagawa T, Ochiai G, Koso H, Nakauchi H, Nagasaki M, Suzuki Y, Watanabe S Ueno K, Iwagawa T, Ochiai G, Koso H, Nakauchi H, Nagasaki M, Suzuki Y, Watanabe S Ueno K, Iwagawa T, Ochiai G, Koso H, Nakauchi H, Nagasaki M, Suzuki Y, Watanabe S Analysis of Müller glia specific genes and their histone modification using Hes1-promoter driven EGFP expressing mouse. Analysis of Müller glia specific genes and their histone modification using Hes1-promoter driven EGFP expressing mouse. Author Correction: Analysis of Müller glia specific genes and their histone modification using Hes1-promoter driven EGFP expressing mouse. Scientific reports, 8, 1, 8946-8946 Scientific reports, 8, 1, 8946-8946 Scientific reports, 8, 1, 8946-8946 2018/06 英語 研究論文(学術雑誌) 公開
Koshiba S, Motoike I, Saigusa D, Inoue J, Shirota M, Katoh Y, Katsuoka F, Danjoh I, Hozawa A, Kuriyama S, Minegishi N, Nagasaki M, Takai-Igarashi T, Ogishima S, Fuse N, Kure S, Tamiya G, Tanabe O, Yasuda J, Kinoshita K, Yamamoto M Koshiba S, Motoike I, Saigusa D, Inoue J, Shirota M, Katoh Y, Katsuoka F, Danjoh I, Hozawa A, Kuriyama S, Minegishi N, Nagasaki M, Takai-Igarashi T, Ogishima S, Fuse N, Kure S, Tamiya G, Tanabe O, Yasuda J, Kinoshita K, Yamamoto M Koshiba S, Motoike I, Saigusa D, Inoue J, Shirota M, Katoh Y, Katsuoka F, Danjoh I, Hozawa A, Kuriyama S, Minegishi N, Nagasaki M, Takai-Igarashi T, Ogishima S, Fuse N, Kure S, Tamiya G, Tanabe O, Yasuda J, Kinoshita K, Yamamoto M Omics research project on prospective cohort studies from the Tohoku Medical Megabank Project. Omics research project on prospective cohort studies from the Tohoku Medical Megabank Project. Omics research project on prospective cohort studies from the Tohoku Medical Megabank Project. Genes to cells : devoted to molecular & cellular mechanisms, 23, 6, 406-417 Genes to cells : devoted to molecular & cellular mechanisms, 23, 6, 406-417 Genes to cells : devoted to molecular & cellular mechanisms, 23, 6, 406-417 2018/06 英語 研究論文(学術雑誌) 公開
Hirata S, Kojima K, Misawa K, Gervais O, Kawai Y, Nagasaki M Hirata S, Kojima K, Misawa K, Gervais O, Kawai Y, Nagasaki M Hirata S, Kojima K, Misawa K, Gervais O, Kawai Y, Nagasaki M Population-scale whole genome sequencing identifies 271 highly polymorphic short tandem repeats from Japanese population. Population-scale whole genome sequencing identifies 271 highly polymorphic short tandem repeats from Japanese population. Population-scale whole genome sequencing identifies 271 highly polymorphic short tandem repeats from Japanese population. Heliyon, 4, 5, e00625-e00625 Heliyon, 4, 5, e00625-e00625 Heliyon, 4, 5, e00625-e00625 2018/05 英語 研究論文(学術雑誌) 公開
Nishida N, Aiba Y, Hitomi Y, Kawashima M, Kojima K, Kawai Y, Ueno K, Nakamura H, Yamashiki N, Tanaka T, Tamura S, Mori A, Yagi S, Soejima Y, Yoshizumi T, Takatsuki M, Tanaka A, Harada K, Shimoda S, Komori A, Eguchi S, Maehara Y, Uemoto S, Kokudo N, Nagasaki M, Tokunaga K, Nakamura M Nishida N, Aiba Y, Hitomi Y, Kawashima M, Kojima K, Kawai Y, Ueno K, Nakamura H, Yamashiki N, Tanaka T, Tamura S, Mori A, Yagi S, Soejima Y, Yoshizumi T, Takatsuki M, Tanaka A, Harada K, Shimoda S, Komori A, Eguchi S, Maehara Y, Uemoto S, Kokudo N, Nagasaki M, Tokunaga K, Nakamura M Nishida N, Aiba Y, Hitomi Y, Kawashima M, Kojima K, Kawai Y, Ueno K, Nakamura H, Yamashiki N, Tanaka T, Tamura S, Mori A, Yagi S, Soejima Y, Yoshizumi T, Takatsuki M, Tanaka A, Harada K, Shimoda S, Komori A, Eguchi S, Maehara Y, Uemoto S, Kokudo N, Nagasaki M, Tokunaga K, Nakamura M NELFCD and CTSZ loci are associated with jaundice-stage progression in primary biliary cholangitis in the Japanese population. NELFCD and CTSZ loci are associated with jaundice-stage progression in primary biliary cholangitis in the Japanese population. NELFCD and CTSZ loci are associated with jaundice-stage progression in primary biliary cholangitis in the Japanese population. Scientific reports, 8, 1, 8071-8071 Scientific reports, 8, 1, 8071-8071 Scientific reports, 8, 1, 8071-8071 2018/05 英語 研究論文(学術雑誌) 公開
Nishioka M, Bundo M, Ueda J, Katsuoka F, Sato Y, Kuroki Y, Ishii T, Ukai W, Murayama S, Hashimoto E, Nagasaki M, Yasuda J, Kasai K, Kato T, Iwamoto K Nishioka M, Bundo M, Ueda J, Katsuoka F, Sato Y, Kuroki Y, Ishii T, Ukai W, Murayama S, Hashimoto E, Nagasaki M, Yasuda J, Kasai K, Kato T, Iwamoto K Nishioka M, Bundo M, Ueda J, Katsuoka F, Sato Y, Kuroki Y, Ishii T, Ukai W, Murayama S, Hashimoto E, Nagasaki M, Yasuda J, Kasai K, Kato T, Iwamoto K Identification of somatic mutations in postmortem human brains by whole genome sequencing and their implications for psychiatric disorders. Identification of somatic mutations in postmortem human brains by whole genome sequencing and their implications for psychiatric disorders. Identification of somatic mutations in postmortem human brains by whole genome sequencing and their implications for psychiatric disorders. Psychiatry and clinical neurosciences, 72, 4, 280-294 Psychiatry and clinical neurosciences, 72, 4, 280-294 Psychiatry and clinical neurosciences, 72, 4, 280-294 2018/04 英語 研究論文(学術雑誌) 公開
Naito T, Yokoyama N, Kakuta Y, Ueno K, Kawai Y, Onodera M, Moroi R, Kuroha M, Kanazawa Y, Kimura T, Shiga H, Endo K, Nagasaki M, Masamune A, Kinouchi Y, Shimosegawa T Naito T, Yokoyama N, Kakuta Y, Ueno K, Kawai Y, Onodera M, Moroi R, Kuroha M, Kanazawa Y, Kimura T, Shiga H, Endo K, Nagasaki M, Masamune A, Kinouchi Y, Shimosegawa T Naito T, Yokoyama N, Kakuta Y, Ueno K, Kawai Y, Onodera M, Moroi R, Kuroha M, Kanazawa Y, Kimura T, Shiga H, Endo K, Nagasaki M, Masamune A, Kinouchi Y, Shimosegawa T Clinical and genetic risk factors for decreased bone mineral density in Japanese patients with inflammatory bowel disease. Clinical and genetic risk factors for decreased bone mineral density in Japanese patients with inflammatory bowel disease. Clinical and genetic risk factors for decreased bone mineral density in Japanese patients with inflammatory bowel disease. Journal of gastroenterology and hepatology,  ,  , epub-epub Journal of gastroenterology and hepatology,  ,  , epub-epub Journal of gastroenterology and hepatology,  ,  , epub-epub 2018/03 英語 研究論文(学術雑誌) 公開
Shibuya Y, Tokunaga H, Saito S, Shimokawa K, Katsuoka F, Bin L, Kojima K, Nagasaki M, Yamamoto M, Yaegashi N, Yasuda J Shibuya Y, Tokunaga H, Saito S, Shimokawa K, Katsuoka F, Bin L, Kojima K, Nagasaki M, Yamamoto M, Yaegashi N, Yasuda J Shibuya Y, Tokunaga H, Saito S, Shimokawa K, Katsuoka F, Bin L, Kojima K, Nagasaki M, Yamamoto M, Yaegashi N, Yasuda J Identification of somatic genetic alterations in ovarian clear cell carcinoma with next generation sequencing. Identification of somatic genetic alterations in ovarian clear cell carcinoma with next generation sequencing. Identification of somatic genetic alterations in ovarian clear cell carcinoma with next generation sequencing. Genes, chromosomes & cancer, 57, 2, 51-60 Genes, chromosomes & cancer, 57, 2, 51-60 Genes, chromosomes & cancer, 57, 2, 51-60 2018/02 英語 研究論文(学術雑誌) 公開
Yamaguchi-Kabata Y, Yasuda J, Tanabe O, Suzuki Y, Kawame H, Fuse N, Nagasaki M, Kawai Y, Kojima K, Katsuoka F, Saito S, Danjoh I, Motoike IN, Yamashita R, Koshiba S, Saigusa D, Tamiya G, Kure S, Yaegashi N, Kawaguchi Y, Nagami F, Kuriyama S, Sugawara J, Minegishi N, Hozawa A, Ogishima S, Kiyomoto H, Takai-Igarashi T, ToMMo Study Group., Kinoshita K, Yamamoto M Yamaguchi-Kabata Y, Yasuda J, Tanabe O, Suzuki Y, Kawame H, Fuse N, Nagasaki M, Kawai Y, Kojima K, Katsuoka F, Saito S, Danjoh I, Motoike IN, Yamashita R, Koshiba S, Saigusa D, Tamiya G, Kure S, Yaegashi N, Kawaguchi Y, Nagami F, Kuriyama S, Sugawara J, Minegishi N, Hozawa A, Ogishima S, Kiyomoto H, Takai-Igarashi T, ToMMo Study Group., Kinoshita K, Yamamoto M Yamaguchi-Kabata Y, Yasuda J, Tanabe O, Suzuki Y, Kawame H, Fuse N, Nagasaki M, Kawai Y, Kojima K, Katsuoka F, Saito S, Danjoh I, Motoike IN, Yamashita R, Koshiba S, Saigusa D, Tamiya G, Kure S, Yaegashi N, Kawaguchi Y, Nagami F, Kuriyama S, Sugawara J, Minegishi N, Hozawa A, Ogishima S, Kiyomoto H, Takai-Igarashi T, ToMMo Study Group., Kinoshita K, Yamamoto M Evaluation of reported pathogenic variants and their frequencies in a Japanese population based on a whole-genome reference panel of 2049 individuals. Evaluation of reported pathogenic variants and their frequencies in a Japanese population based on a whole-genome reference panel of 2049 individuals. Evaluation of reported pathogenic variants and their frequencies in a Japanese population based on a whole-genome reference panel of 2049 individuals. Journal of human genetics, 63, 2, 213-230 Journal of human genetics, 63, 2, 213-230 Journal of human genetics, 63, 2, 213-230 2018/02 英語 研究論文(学術雑誌) 公開
Mimori T, Yasuda J, Kuroki Y, Shibata TF, Katsuoka F, Saito S, Nariai N, Ono A, Nakai-Inagaki N, Misawa K, Tateno K, Kawai Y, Fuse N, Hozawa A, Kuriyama S, Sugawara J, Minegishi N, Suzuki K, Kinoshita K, Nagasaki M, Yamamoto M Mimori T, Yasuda J, Kuroki Y, Shibata TF, Katsuoka F, Saito S, Nariai N, Ono A, Nakai-Inagaki N, Misawa K, Tateno K, Kawai Y, Fuse N, Hozawa A, Kuriyama S, Sugawara J, Minegishi N, Suzuki K, Kinoshita K, Nagasaki M, Yamamoto M Mimori T, Yasuda J, Kuroki Y, Shibata TF, Katsuoka F, Saito S, Nariai N, Ono A, Nakai-Inagaki N, Misawa K, Tateno K, Kawai Y, Fuse N, Hozawa A, Kuriyama S, Sugawara J, Minegishi N, Suzuki K, Kinoshita K, Nagasaki M, Yamamoto M Construction of full-length Japanese reference panel of class I HLA genes with single-molecule, real-time sequencing. Construction of full-length Japanese reference panel of class I HLA genes with single-molecule, real-time sequencing. Construction of full-length Japanese reference panel of class I HLA genes with single-molecule, real-time sequencing. The pharmacogenomics journal,  ,  , epub-epub The pharmacogenomics journal,  ,  , epub-epub The pharmacogenomics journal,  ,  , epub-epub 2018/01 英語 研究論文(学術雑誌) 公開
Chiba H, Kakuta Y, Kinouchi Y, Kawai Y, Watanabe K, Nagao M, Naito T, Onodera M, Moroi R, Kuroha M, Kanazawa Y, Kimura T, Shiga H, Endo K, Negoro K, Nagasaki M, Unno M, Shimosegawa T Chiba H, Kakuta Y, Kinouchi Y, Kawai Y, Watanabe K, Nagao M, Naito T, Onodera M, Moroi R, Kuroha M, Kanazawa Y, Kimura T, Shiga H, Endo K, Negoro K, Nagasaki M, Unno M, Shimosegawa T Chiba H, Kakuta Y, Kinouchi Y, Kawai Y, Watanabe K, Nagao M, Naito T, Onodera M, Moroi R, Kuroha M, Kanazawa Y, Kimura T, Shiga H, Endo K, Negoro K, Nagasaki M, Unno M, Shimosegawa T Allele-specific DNA methylation of disease susceptibility genes in Japanese patients with inflammatory bowel disease. Allele-specific DNA methylation of disease susceptibility genes in Japanese patients with inflammatory bowel disease. Allele-specific DNA methylation of disease susceptibility genes in Japanese patients with inflammatory bowel disease. PloS one, 13, 3, e0194036-e0194036 PloS one, 13, 3, e0194036-e0194036 PloS one, 13, 3, e0194036-e0194036 2018 英語 研究論文(学術雑誌) 公開
Takai-Igarashi T, Kinoshita K, Nagasaki M, Ogishima S, Nakamura N, Nagase S, Nagaie S, Saito T, Nagami F, Minegishi N, Suzuki Y, Suzuki K, Hashizume H, Kuriyama S, Hozawa A, Yaegashi N, Kure S, Tamiya G, Kawaguchi Y, Tanaka H, Yamamoto M Takai-Igarashi T, Kinoshita K, Nagasaki M, Ogishima S, Nakamura N, Nagase S, Nagaie S, Saito T, Nagami F, Minegishi N, Suzuki Y, Suzuki K, Hashizume H, Kuriyama S, Hozawa A, Yaegashi N, Kure S, Tamiya G, Kawaguchi Y, Tanaka H, Yamamoto M Takai-Igarashi T, Kinoshita K, Nagasaki M, Ogishima S, Nakamura N, Nagase S, Nagaie S, Saito T, Nagami F, Minegishi N, Suzuki Y, Suzuki K, Hashizume H, Kuriyama S, Hozawa A, Yaegashi N, Kure S, Tamiya G, Kawaguchi Y, Tanaka H, Yamamoto M Security controls in an integrated Biobank to protect privacy in data sharing: rationale and study design. Security controls in an integrated Biobank to protect privacy in data sharing: rationale and study design. Security controls in an integrated Biobank to protect privacy in data sharing: rationale and study design. BMC medical informatics and decision making, 17, 1, 100-100 BMC medical informatics and decision making, 17, 1, 100-100 BMC medical informatics and decision making, 17, 1, 100-100 2017/07 英語 研究論文(学術雑誌) 公開
Hitomi Y, Kojima K, Kawashima M, Kawai Y, Nishida N, Aiba Y, Yasunami M, Nagasaki M, Nakamura M, Tokunaga K Hitomi Y, Kojima K, Kawashima M, Kawai Y, Nishida N, Aiba Y, Yasunami M, Nagasaki M, Nakamura M, Tokunaga K Hitomi Y, Kojima K, Kawashima M, Kawai Y, Nishida N, Aiba Y, Yasunami M, Nagasaki M, Nakamura M, Tokunaga K Identification of the functional variant driving ORMDL3 and GSDMB expression in human chromosome 17q12-21 in primary biliary cholangitis. Identification of the functional variant driving ORMDL3 and GSDMB expression in human chromosome 17q12-21 in primary biliary cholangitis. Identification of the functional variant driving ORMDL3 and GSDMB expression in human chromosome 17q12-21 in primary biliary cholangitis. Scientific reports, 7, 1, 2904-2904 Scientific reports, 7, 1, 2904-2904 Scientific reports, 7, 1, 2904-2904 2017/06 英語 研究論文(学術雑誌) 公開
Ueno K, Iwagawa T, Ochiai G, Koso H, Nakauchi H, Nagasaki M, Suzuki Y, Watanabe S Ueno K, Iwagawa T, Ochiai G, Koso H, Nakauchi H, Nagasaki M, Suzuki Y, Watanabe S Ueno K, Iwagawa T, Ochiai G, Koso H, Nakauchi H, Nagasaki M, Suzuki Y, Watanabe S Analysis of Müller glia specific genes and their histone modification using Hes1-promoter driven EGFP expressing mouse. Analysis of Müller glia specific genes and their histone modification using Hes1-promoter driven EGFP expressing mouse. Analysis of Müller glia specific genes and their histone modification using Hes1-promoter driven EGFP expressing mouse. Scientific reports, 7, 1, 3578-3578 Scientific reports, 7, 1, 3578-3578 Scientific reports, 7, 1, 3578-3578 2017/06 英語 研究論文(学術雑誌) 公開
Matsuura K, Sawai H, Ikeo K, Ogawa S, Iio E, Isogawa M, Shimada N, Komori A, Toyoda H, Kumada T, Namisaki T, Yoshiji H, Sakamoto N, Nakagawa M, Asahina Y, Kurosaki M, Izumi N, Enomoto N, Kusakabe A, Kajiwara E, Itoh Y, Ide T, Tamori A, Matsubara M, Kawada N, Shirabe K, Tomita E, Honda M, Kaneko S, Nishina S, Suetsugu A, Hiasa Y, Watanabe H, Genda T, Sakaida I, Nishiguchi S, Takaguchi K, Tanaka E, Sugihara J, Shimada M, Kondo Y, Kawai Y, Kojima K, Nagasaki M, Tokunaga K, Tanaka Y, Japanese Genome-Wide Association Study Group for Viral Hepatitis. Matsuura K, Sawai H, Ikeo K, Ogawa S, Iio E, Isogawa M, Shimada N, Komori A, Toyoda H, Kumada T, Namisaki T, Yoshiji H, Sakamoto N, Nakagawa M, Asahina Y, Kurosaki M, Izumi N, Enomoto N, Kusakabe A, Kajiwara E, Itoh Y, Ide T, Tamori A, Matsubara M, Kawada N, Shirabe K, Tomita E, Honda M, Kaneko S, Nishina S, Suetsugu A, Hiasa Y, Watanabe H, Genda T, Sakaida I, Nishiguchi S, Takaguchi K, Tanaka E, Sugihara J, Shimada M, Kondo Y, Kawai Y, Kojima K, Nagasaki M, Tokunaga K, Tanaka Y, Japanese Genome-Wide Association Study Group for Viral Hepatitis. Matsuura K, Sawai H, Ikeo K, Ogawa S, Iio E, Isogawa M, Shimada N, Komori A, Toyoda H, Kumada T, Namisaki T, Yoshiji H, Sakamoto N, Nakagawa M, Asahina Y, Kurosaki M, Izumi N, Enomoto N, Kusakabe A, Kajiwara E, Itoh Y, Ide T, Tamori A, Matsubara M, Kawada N, Shirabe K, Tomita E, Honda M, Kaneko S, Nishina S, Suetsugu A, Hiasa Y, Watanabe H, Genda T, Sakaida I, Nishiguchi S, Takaguchi K, Tanaka E, Sugihara J, Shimada M, Kondo Y, Kawai Y, Kojima K, Nagasaki M, Tokunaga K, Tanaka Y, Japanese Genome-Wide Association Study Group for Viral Hepatitis. Genome-Wide Association Study Identifies TLL1 Variant Associated With Development of Hepatocellular Carcinoma After Eradication of Hepatitis C Virus Infection. Genome-Wide Association Study Identifies TLL1 Variant Associated With Development of Hepatocellular Carcinoma After Eradication of Hepatitis C Virus Infection. Genome-Wide Association Study Identifies TLL1 Variant Associated With Development of Hepatocellular Carcinoma After Eradication of Hepatitis C Virus Infection. Gastroenterology, 152, 6, 1383-1394 Gastroenterology, 152, 6, 1383-1394 Gastroenterology, 152, 6, 1383-1394 2017/05 英語 研究論文(学術雑誌) 公開
Hamanaka T, Kimura M, Sakurai T, Ishida N, Yasuda J, Nagasaki M, Nariai N, Endo A, Homma K, Katsuoka F, Matsubara Y, Yamamoto M, Fuse N Hamanaka T, Kimura M, Sakurai T, Ishida N, Yasuda J, Nagasaki M, Nariai N, Endo A, Homma K, Katsuoka F, Matsubara Y, Yamamoto M, Fuse N Hamanaka T, Kimura M, Sakurai T, Ishida N, Yasuda J, Nagasaki M, Nariai N, Endo A, Homma K, Katsuoka F, Matsubara Y, Yamamoto M, Fuse N A Histologic Categorization of Aqueous Outflow Routes in Familial Open-Angle Glaucoma and Associations With Mutations in the MYOC Gene in Japanese Patients. A Histologic Categorization of Aqueous Outflow Routes in Familial Open-Angle Glaucoma and Associations With Mutations in the MYOC Gene in Japanese Patients. A Histologic Categorization of Aqueous Outflow Routes in Familial Open-Angle Glaucoma and Associations With Mutations in the MYOC Gene in Japanese Patients. Investigative ophthalmology & visual science, 58, 5, 2818-2831 Investigative ophthalmology & visual science, 58, 5, 2818-2831 Investigative ophthalmology & visual science, 58, 5, 2818-2831 2017/05 英語 研究論文(学術雑誌) 公開
Ueta M, Sawai H, Shingaki R, Kawai Y, Sotozono C, Kojima K, Yoon KC, Kim MK, Seo KY, Joo CK, Nagasaki M, Kinoshita S, Tokunaga K Ueta M, Sawai H, Shingaki R, Kawai Y, Sotozono C, Kojima K, Yoon KC, Kim MK, Seo KY, Joo CK, Nagasaki M, Kinoshita S, Tokunaga K Ueta M, Sawai H, Shingaki R, Kawai Y, Sotozono C, Kojima K, Yoon KC, Kim MK, Seo KY, Joo CK, Nagasaki M, Kinoshita S, Tokunaga K Genome-wide association study using the ethnicity-specific Japonica array: identification of new susceptibility loci for cold medicine-related Stevens-Johnson syndrome with severe ocular complications. Genome-wide association study using the ethnicity-specific Japonica array: identification of new susceptibility loci for cold medicine-related Stevens-Johnson syndrome with severe ocular complications. Genome-wide association study using the ethnicity-specific Japonica array: identification of new susceptibility loci for cold medicine-related Stevens-Johnson syndrome with severe ocular complications. Journal of human genetics, 62, 4, 485-489 Journal of human genetics, 62, 4, 485-489 Journal of human genetics, 62, 4, 485-489 2017/04 英語 研究論文(学術雑誌) 公開
Liu TC, Naito T, Liu Z, VanDussen KL, Haritunians T, Li D, Endo K, Kawai Y, Nagasaki M, Kinouchi Y, McGovern DP, Shimosegawa T, Kakuta Y, Stappenbeck TS Liu TC, Naito T, Liu Z, VanDussen KL, Haritunians T, Li D, Endo K, Kawai Y, Nagasaki M, Kinouchi Y, McGovern DP, Shimosegawa T, Kakuta Y, Stappenbeck TS Liu TC, Naito T, Liu Z, VanDussen KL, Haritunians T, Li D, Endo K, Kawai Y, Nagasaki M, Kinouchi Y, McGovern DP, Shimosegawa T, Kakuta Y, Stappenbeck TS <i>LRRK2</i> but not <i>ATG16L1</i> is associated with Paneth cell defect in Japanese Crohn's disease patients. <i>LRRK2</i> but not <i>ATG16L1</i> is associated with Paneth cell defect in Japanese Crohn's disease patients. <i>LRRK2</i> but not <i>ATG16L1</i> is associated with Paneth cell defect in Japanese Crohn's disease patients. JCI insight, 2, 6, e91917-e91917 JCI insight, 2, 6, e91917-e91917 JCI insight, 2, 6, e91917-e91917 2017/03 英語 研究論文(学術雑誌) 公開
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Shiga Y, Nishiguchi KM, Kawai Y, Kojima K, Sato K, Fujita K, Takahashi M, Omodaka K, Araie M, Kashiwagi K, Aihara M, Iwata T, Mabuchi F, Takamoto M, Ozaki M, Kawase K, Fuse N, Yamamoto M, Yasuda J, Nagasaki M, Nakazawa T, Japan Glaucoma Society Omics Group (JGS-OG). Shiga Y, Nishiguchi KM, Kawai Y, Kojima K, Sato K, Fujita K, Takahashi M, Omodaka K, Araie M, Kashiwagi K, Aihara M, Iwata T, Mabuchi F, Takamoto M, Ozaki M, Kawase K, Fuse N, Yamamoto M, Yasuda J, Nagasaki M, Nakazawa T, Japan Glaucoma Society Omics Group (JGS-OG). Shiga Y, Nishiguchi KM, Kawai Y, Kojima K, Sato K, Fujita K, Takahashi M, Omodaka K, Araie M, Kashiwagi K, Aihara M, Iwata T, Mabuchi F, Takamoto M, Ozaki M, Kawase K, Fuse N, Yamamoto M, Yasuda J, Nagasaki M, Nakazawa T, Japan Glaucoma Society Omics Group (JGS-OG). Genetic analysis of Japanese primary open-angle glaucoma patients and clinical characterization of risk alleles near CDKN2B-AS1, SIX6 and GAS7. Genetic analysis of Japanese primary open-angle glaucoma patients and clinical characterization of risk alleles near CDKN2B-AS1, SIX6 and GAS7. Genetic analysis of Japanese primary open-angle glaucoma patients and clinical characterization of risk alleles near CDKN2B-AS1, SIX6 and GAS7. PloS one, 12, 12, e0186678-e0186678 PloS one, 12, 12, e0186678-e0186678 PloS one, 12, 12, e0186678-e0186678 2017 英語 研究論文(学術雑誌) 公開
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Kojima K, Kawai Y, Misawa K, Mimori T, Nagasaki M Kojima K, Kawai Y, Misawa K, Mimori T, Nagasaki M Kojima K, Kawai Y, Misawa K, Mimori T, Nagasaki M STR-realigner: a realignment method for short tandem repeat regions. STR-realigner: a realignment method for short tandem repeat regions. STR-realigner: a realignment method for short tandem repeat regions. BMC genomics, 17, 1, 991-991 BMC genomics, 17, 1, 991-991 BMC genomics, 17, 1, 991-991 2016/12 英語 研究論文(学術雑誌) 公開
Koso H, Tsuhako A, Lai CY, Baba Y, Otsu M, Ueno K, Nagasaki M, Suzuki Y, Watanabe S Koso H, Tsuhako A, Lai CY, Baba Y, Otsu M, Ueno K, Nagasaki M, Suzuki Y, Watanabe S Koso H, Tsuhako A, Lai CY, Baba Y, Otsu M, Ueno K, Nagasaki M, Suzuki Y, Watanabe S Conditional rod photoreceptor ablation reveals Sall1 as a microglial marker and regulator of microglial morphology in the retina. Conditional rod photoreceptor ablation reveals Sall1 as a microglial marker and regulator of microglial morphology in the retina. Conditional rod photoreceptor ablation reveals Sall1 as a microglial marker and regulator of microglial morphology in the retina. Glia, 64, 11, 2005-2024 Glia, 64, 11, 2005-2024 Glia, 64, 11, 2005-2024 2016/11 英語 研究論文(学術雑誌) 公開
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Hiramoto T, Ebihara Y, Mizoguchi Y, Nakamura K, Yamaguchi K, Ueno K, Nariai N, Mochizuki S, Yamamoto S, Nagasaki M, Furukawa Y, Tani K, Nakauchi H, Kobayashi M, Tsuji K Hiramoto T, Ebihara Y, Mizoguchi Y, Nakamura K, Yamaguchi K, Ueno K, Nariai N, Mochizuki S, Yamamoto S, Nagasaki M, Furukawa Y, Tani K, Nakauchi H, Kobayashi M, Tsuji K Hiramoto T, Ebihara Y, Mizoguchi Y, Nakamura K, Yamaguchi K, Ueno K, Nariai N, Mochizuki S, Yamamoto S, Nagasaki M, Furukawa Y, Tani K, Nakauchi H, Kobayashi M, Tsuji K Wnt3a stimulates maturation of impaired neutrophils developed from severe congenital neutropenia patient-derived pluripotent stem cells. Wnt3a stimulates maturation of impaired neutrophils developed from severe congenital neutropenia patient-derived pluripotent stem cells. Wnt3a stimulates maturation of impaired neutrophils developed from severe congenital neutropenia patient-derived pluripotent stem cells. Proceedings of the National Academy of Sciences of the United States of America, 110, 8, 3023-3028 Proceedings of the National Academy of Sciences of the United States of America, 110, 8, 3023-3028 Proceedings of the National Academy of Sciences of the United States of America, 110, 8, 3023-3028 2013/02 英語 研究論文(学術雑誌) 公開
Nagasaki M, Fujita A, Sekiya Y, Saito A, Ikeda E, Li C, Miyano S Nagasaki M, Fujita A, Sekiya Y, Saito A, Ikeda E, Li C, Miyano S Nagasaki M, Fujita A, Sekiya Y, Saito A, Ikeda E, Li C, Miyano S XiP: a computational environment to create, extend and share workflows. XiP: a computational environment to create, extend and share workflows. XiP: a computational environment to create, extend and share workflows. Bioinformatics (Oxford, England), 29, 1, 137-139 Bioinformatics (Oxford, England), 29, 1, 137-139 Bioinformatics (Oxford, England), 29, 1, 137-139 2013/01 英語 研究論文(学術雑誌) 公開
Razak SR, Ueno K, Takayama N, Nariai N, Nagasaki M, Saito R, Koso H, Lai CY, Murakami M, Tsuji K, Michiue T, Nakauchi H, Otsu M, Watanabe S Razak SR, Ueno K, Takayama N, Nariai N, Nagasaki M, Saito R, Koso H, Lai CY, Murakami M, Tsuji K, Michiue T, Nakauchi H, Otsu M, Watanabe S Razak SR, Ueno K, Takayama N, Nariai N, Nagasaki M, Saito R, Koso H, Lai CY, Murakami M, Tsuji K, Michiue T, Nakauchi H, Otsu M, Watanabe S Profiling of microRNA in human and mouse ES and iPS cells reveals overlapping but distinct microRNA expression patterns. Profiling of microRNA in human and mouse ES and iPS cells reveals overlapping but distinct microRNA expression patterns. Profiling of microRNA in human and mouse ES and iPS cells reveals overlapping but distinct microRNA expression patterns. PloS one, 8, 9, e73532-e73532 PloS one, 8, 9, e73532-e73532 PloS one, 8, 9, e73532-e73532 2013 英語 研究論文(学術雑誌) 公開
Mimori T, Nariai N, Kojima K, Takahashi M, Ono A, Sato Y, Yamaguchi-Kabata Y, Nagasaki M Mimori T, Nariai N, Kojima K, Takahashi M, Ono A, Sato Y, Yamaguchi-Kabata Y, Nagasaki M Mimori T, Nariai N, Kojima K, Takahashi M, Ono A, Sato Y, Yamaguchi-Kabata Y, Nagasaki M iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data. iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data. iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data. BMC systems biology, 7 Suppl 6,  , S8-S8 BMC systems biology, 7 Suppl 6,  , S8-S8 BMC systems biology, 7 Suppl 6,  , S8-S8 2013 英語 研究論文(学術雑誌) 公開
Koso H, Takeda H, Yew CC, Ward JM, Nariai N, Ueno K, Nagasaki M, Watanabe S, Rust AG, Adams DJ, Copeland NG, Jenkins NA Koso H, Takeda H, Yew CC, Ward JM, Nariai N, Ueno K, Nagasaki M, Watanabe S, Rust AG, Adams DJ, Copeland NG, Jenkins NA Koso H, Takeda H, Yew CC, Ward JM, Nariai N, Ueno K, Nagasaki M, Watanabe S, Rust AG, Adams DJ, Copeland NG, Jenkins NA Transposon mutagenesis identifies genes that transform neural stem cells into glioma-initiating cells. Transposon mutagenesis identifies genes that transform neural stem cells into glioma-initiating cells. Transposon mutagenesis identifies genes that transform neural stem cells into glioma-initiating cells. Proceedings of the National Academy of Sciences of the United States of America, 109, 44, E2998-3007 Proceedings of the National Academy of Sciences of the United States of America, 109, 44, E2998-3007 Proceedings of the National Academy of Sciences of the United States of America, 109, 44, E2998-3007 2012/10 英語 研究論文(学術雑誌) 公開
Yasuda T, Suzuki S, Nagasaki M, Miyano S Yasuda T, Suzuki S, Nagasaki M, Miyano S Yasuda T, Suzuki S, Nagasaki M, Miyano S ChopSticks: High-resolution analysis of homozygous deletions by exploiting concordant read pairs. ChopSticks: High-resolution analysis of homozygous deletions by exploiting concordant read pairs. ChopSticks: High-resolution analysis of homozygous deletions by exploiting concordant read pairs. BMC bioinformatics, 13,  , 279-279 BMC bioinformatics, 13,  , 279-279 BMC bioinformatics, 13,  , 279-279 2012/10 英語 研究論文(学術雑誌) 公開
Fujimori S, Hirai N, Masuoka K, Oshikubo T, Yamashita T, Washio T, Saito A, Nagasaki M, Miyano S, Miyamoto-Sato E Fujimori S, Hirai N, Masuoka K, Oshikubo T, Yamashita T, Washio T, Saito A, Nagasaki M, Miyano S, Miyamoto-Sato E Fujimori S, Hirai N, Masuoka K, Oshikubo T, Yamashita T, Washio T, Saito A, Nagasaki M, Miyano S, Miyamoto-Sato E IRView: a database and viewer for protein interacting regions. IRView: a database and viewer for protein interacting regions. IRView: a database and viewer for protein interacting regions. Bioinformatics (Oxford, England), 28, 14, 1949-1950 Bioinformatics (Oxford, England), 28, 14, 1949-1950 Bioinformatics (Oxford, England), 28, 14, 1949-1950 2012/07 英語 研究論文(学術雑誌) 公開
Kawano S, Shimamura T, Niida A, Imoto S, Yamaguchi R, Nagasaki M, Yoshida R, Print C, Miyano S Kawano S, Shimamura T, Niida A, Imoto S, Yamaguchi R, Nagasaki M, Yoshida R, Print C, Miyano S Kawano S, Shimamura T, Niida A, Imoto S, Yamaguchi R, Nagasaki M, Yoshida R, Print C, Miyano S Identifying gene pathways associated with cancer characteristics via sparse statistical methods. Identifying gene pathways associated with cancer characteristics via sparse statistical methods. Identifying gene pathways associated with cancer characteristics via sparse statistical methods. IEEE/ACM transactions on computational biology and bioinformatics, 9, 4, 966-972 IEEE/ACM transactions on computational biology and bioinformatics, 9, 4, 966-972 IEEE/ACM transactions on computational biology and bioinformatics, 9, 4, 966-972 2012/07 英語 研究論文(学術雑誌) 公開
Yamamoto M, Yamaguchi R, Munakata K, Takashima K, Nishiyama M, Hioki K, Ohnishi Y, Nagasaki M, Imoto S, Miyano S, Ishige A, Watanabe K Yamamoto M, Yamaguchi R, Munakata K, Takashima K, Nishiyama M, Hioki K, Ohnishi Y, Nagasaki M, Imoto S, Miyano S, Ishige A, Watanabe K Yamamoto M, Yamaguchi R, Munakata K, Takashima K, Nishiyama M, Hioki K, Ohnishi Y, Nagasaki M, Imoto S, Miyano S, Ishige A, Watanabe K A microarray analysis of gnotobiotic mice indicating that microbial exposure during the neonatal period plays an essential role in immune system development. A microarray analysis of gnotobiotic mice indicating that microbial exposure during the neonatal period plays an essential role in immune system development. A microarray analysis of gnotobiotic mice indicating that microbial exposure during the neonatal period plays an essential role in immune system development. BMC genomics, 13,  , 335-335 BMC genomics, 13,  , 335-335 BMC genomics, 13,  , 335-335 2012/07 英語 研究論文(学術雑誌) 公開
Fujimoto A, Totoki Y, Abe T, Boroevich KA, Hosoda F, Nguyen HH, Aoki M, Hosono N, Kubo M, Miya F, Arai Y, Takahashi H, Shirakihara T, Nagasaki M, Shibuya T, Nakano K, Watanabe-Makino K, Tanaka H, Nakamura H, Kusuda J, Ojima H, Shimada K, Okusaka T, Ueno M, Shigekawa Y, Kawakami Y, Arihiro K, Ohdan H, Gotoh K, Ishikawa O, Ariizumi S, Yamamoto M, Yamada T, Chayama K, Kosuge T, Yamaue H, Kamatani N, Miyano S, Nakagama H, Nakamura Y, Tsunoda T, Shibata T, Nakagawa H Fujimoto A, Totoki Y, Abe T, Boroevich KA, Hosoda F, Nguyen HH, Aoki M, Hosono N, Kubo M, Miya F, Arai Y, Takahashi H, Shirakihara T, Nagasaki M, Shibuya T, Nakano K, Watanabe-Makino K, Tanaka H, Nakamura H, Kusuda J, Ojima H, Shimada K, Okusaka T, Ueno M, Shigekawa Y, Kawakami Y, Arihiro K, Ohdan H, Gotoh K, Ishikawa O, Ariizumi S, Yamamoto M, Yamada T, Chayama K, Kosuge T, Yamaue H, Kamatani N, Miyano S, Nakagama H, Nakamura Y, Tsunoda T, Shibata T, Nakagawa H Fujimoto A, Totoki Y, Abe T, Boroevich KA, Hosoda F, Nguyen HH, Aoki M, Hosono N, Kubo M, Miya F, Arai Y, Takahashi H, Shirakihara T, Nagasaki M, Shibuya T, Nakano K, Watanabe-Makino K, Tanaka H, Nakamura H, Kusuda J, Ojima H, Shimada K, Okusaka T, Ueno M, Shigekawa Y, Kawakami Y, Arihiro K, Ohdan H, Gotoh K, Ishikawa O, Ariizumi S, Yamamoto M, Yamada T, Chayama K, Kosuge T, Yamaue H, Kamatani N, Miyano S, Nakagama H, Nakamura Y, Tsunoda T, Shibata T, Nakagawa H Whole-genome sequencing of liver cancers identifies etiological influences on mutation patterns and recurrent mutations in chromatin regulators. Whole-genome sequencing of liver cancers identifies etiological influences on mutation patterns and recurrent mutations in chromatin regulators. Whole-genome sequencing of liver cancers identifies etiological influences on mutation patterns and recurrent mutations in chromatin regulators. Nature genetics, 44, 7, 760-764 Nature genetics, 44, 7, 760-764 Nature genetics, 44, 7, 760-764 2012/05 英語 研究論文(学術雑誌) 公開
Yamauchi M, Yamaguchi R, Nakata A, Kohno T, Nagasaki M, Shimamura T, Imoto S, Saito A, Ueno K, Hatanaka Y, Yoshida R, Higuchi T, Nomura M, Beer DG, Yokota J, Miyano S, Gotoh N Yamauchi M, Yamaguchi R, Nakata A, Kohno T, Nagasaki M, Shimamura T, Imoto S, Saito A, Ueno K, Hatanaka Y, Yoshida R, Higuchi T, Nomura M, Beer DG, Yokota J, Miyano S, Gotoh N Yamauchi M, Yamaguchi R, Nakata A, Kohno T, Nagasaki M, Shimamura T, Imoto S, Saito A, Ueno K, Hatanaka Y, Yoshida R, Higuchi T, Nomura M, Beer DG, Yokota J, Miyano S, Gotoh N Epidermal growth factor receptor tyrosine kinase defines critical prognostic genes of stage I lung adenocarcinoma. Epidermal growth factor receptor tyrosine kinase defines critical prognostic genes of stage I lung adenocarcinoma. Epidermal growth factor receptor tyrosine kinase defines critical prognostic genes of stage I lung adenocarcinoma. PloS one, 7, 9, e43923-e43923 PloS one, 7, 9, e43923-e43923 PloS one, 7, 9, e43923-e43923 2012 英語 研究論文(学術雑誌) 公開
Suzuki S, Yasuda T, Shiraishi Y, Miyano S, Nagasaki M Suzuki S, Yasuda T, Shiraishi Y, Miyano S, Nagasaki M Suzuki S, Yasuda T, Shiraishi Y, Miyano S, Nagasaki M ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information. ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information. ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information. BMC bioinformatics, 12 Suppl 14,  , S7-S7 BMC bioinformatics, 12 Suppl 14,  , S7-S7 BMC bioinformatics, 12 Suppl 14,  , S7-S7 2011/12 英語 研究論文(学術雑誌) 公開
Chalkidis G, Nagasaki M, Miyano S Chalkidis G, Nagasaki M, Miyano S Chalkidis G, Nagasaki M, Miyano S High performance hybrid functional Petri net simulations of biological pathway models on CUDA. High performance hybrid functional Petri net simulations of biological pathway models on CUDA. High performance hybrid functional Petri net simulations of biological pathway models on CUDA. IEEE/ACM transactions on computational biology and bioinformatics, 8, 6, 1545-1556 IEEE/ACM transactions on computational biology and bioinformatics, 8, 6, 1545-1556 IEEE/ACM transactions on computational biology and bioinformatics, 8, 6, 1545-1556 2011/11 英語 研究論文(学術雑誌) 公開
Jeong E, Nagasaki M, Ikeda E, Sekiya Y, Saito A, Miyano S Jeong E, Nagasaki M, Ikeda E, Sekiya Y, Saito A, Miyano S Jeong E, Nagasaki M, Ikeda E, Sekiya Y, Saito A, Miyano S CSO validator: improving manual curation workflow for biological pathways. CSO validator: improving manual curation workflow for biological pathways. CSO validator: improving manual curation workflow for biological pathways. Bioinformatics (Oxford, England), 27, 17, 2471-2472 Bioinformatics (Oxford, England), 27, 17, 2471-2472 Bioinformatics (Oxford, England), 27, 17, 2471-2472 2011/09 英語 研究論文(学術雑誌) 公開
Yoshida K, Sanada M, Shiraishi Y, Nowak D, Nagata Y, Yamamoto R, Sato Y, Sato-Otsubo A, Kon A, Nagasaki M, Chalkidis G, Suzuki Y, Shiosaka M, Kawahata R, Yamaguchi T, Otsu M, Obara N, Sakata-Yanagimoto M, Ishiyama K, Mori H, Nolte F, Hofmann WK, Miyawaki S, Sugano S, Haferlach C, Koeffler HP, Shih LY, Haferlach T, Chiba S, Nakauchi H, Miyano S, Ogawa S Yoshida K, Sanada M, Shiraishi Y, Nowak D, Nagata Y, Yamamoto R, Sato Y, Sato-Otsubo A, Kon A, Nagasaki M, Chalkidis G, Suzuki Y, Shiosaka M, Kawahata R, Yamaguchi T, Otsu M, Obara N, Sakata-Yanagimoto M, Ishiyama K, Mori H, Nolte F, Hofmann WK, Miyawaki S, Sugano S, Haferlach C, Koeffler HP, Shih LY, Haferlach T, Chiba S, Nakauchi H, Miyano S, Ogawa S Yoshida K, Sanada M, Shiraishi Y, Nowak D, Nagata Y, Yamamoto R, Sato Y, Sato-Otsubo A, Kon A, Nagasaki M, Chalkidis G, Suzuki Y, Shiosaka M, Kawahata R, Yamaguchi T, Otsu M, Obara N, Sakata-Yanagimoto M, Ishiyama K, Mori H, Nolte F, Hofmann WK, Miyawaki S, Sugano S, Haferlach C, Koeffler HP, Shih LY, Haferlach T, Chiba S, Nakauchi H, Miyano S, Ogawa S Frequent pathway mutations of splicing machinery in myelodysplasia. Frequent pathway mutations of splicing machinery in myelodysplasia. Frequent pathway mutations of splicing machinery in myelodysplasia. Nature, 478, 7367, 64-69 Nature, 478, 7367, 64-69 Nature, 478, 7367, 64-69 2011/09 英語 研究論文(学術雑誌) 公開
Nagasaki M, Saito A, Fujita A, Tremmel G, Ueno K, Ikeda E, Jeong E, Miyano S Nagasaki M, Saito A, Fujita A, Tremmel G, Ueno K, Ikeda E, Jeong E, Miyano S Nagasaki M, Saito A, Fujita A, Tremmel G, Ueno K, Ikeda E, Jeong E, Miyano S Systems biology model repository for macrophage pathway simulation. Systems biology model repository for macrophage pathway simulation. Systems biology model repository for macrophage pathway simulation. Bioinformatics (Oxford, England), 27, 11, 1591-1593 Bioinformatics (Oxford, England), 27, 11, 1591-1593 Bioinformatics (Oxford, England), 27, 11, 1591-1593 2011/06 英語 研究論文(学術雑誌) 公開
Tamada Y, Imoto S, Araki H, Nagasaki M, Print C, Charnock-Jones DS, Miyano S Tamada Y, Imoto S, Araki H, Nagasaki M, Print C, Charnock-Jones DS, Miyano S Tamada Y, Imoto S, Araki H, Nagasaki M, Print C, Charnock-Jones DS, Miyano S Estimating genome-wide gene networks using nonparametric Bayesian network models on massively parallel computers. Estimating genome-wide gene networks using nonparametric Bayesian network models on massively parallel computers. Estimating genome-wide gene networks using nonparametric Bayesian network models on massively parallel computers. IEEE/ACM transactions on computational biology and bioinformatics, 8, 3, 683-697 IEEE/ACM transactions on computational biology and bioinformatics, 8, 3, 683-697 IEEE/ACM transactions on computational biology and bioinformatics, 8, 3, 683-697 2011/05 英語 研究論文(学術雑誌) 公開
Li C, Nagasaki M, Koh CH, Miyano S Li C, Nagasaki M, Koh CH, Miyano S Li C, Nagasaki M, Koh CH, Miyano S Online model checking approach based parameter estimation to a neuronal fate decision simulation model in Caenorhabditis elegans with hybrid functional Petri net with extension. Online model checking approach based parameter estimation to a neuronal fate decision simulation model in Caenorhabditis elegans with hybrid functional Petri net with extension. Online model checking approach based parameter estimation to a neuronal fate decision simulation model in Caenorhabditis elegans with hybrid functional Petri net with extension. Molecular bioSystems, 7, 5, 1576-1592 Molecular bioSystems, 7, 5, 1576-1592 Molecular bioSystems, 7, 5, 1576-1592 2011/05 英語 研究論文(学術雑誌) 公開
Tamada Y, Yamaguchi R, Imoto S, Hirose O, Yoshida R, Nagasaki M, Miyano S Tamada Y, Yamaguchi R, Imoto S, Hirose O, Yoshida R, Nagasaki M, Miyano S Tamada Y, Yamaguchi R, Imoto S, Hirose O, Yoshida R, Nagasaki M, Miyano S SiGN-SSM: open source parallel software for estimating gene networks with state space models. SiGN-SSM: open source parallel software for estimating gene networks with state space models. SiGN-SSM: open source parallel software for estimating gene networks with state space models. Bioinformatics (Oxford, England), 27, 8, 1172-1173 Bioinformatics (Oxford, England), 27, 8, 1172-1173 Bioinformatics (Oxford, England), 27, 8, 1172-1173 2011/04 英語 研究論文(学術雑誌) 公開
Koh CH, Nagasaki M, Saito A, Li C, Wong L, Miyano S Koh CH, Nagasaki M, Saito A, Li C, Wong L, Miyano S Koh CH, Nagasaki M, Saito A, Li C, Wong L, Miyano S MIRACH: efficient model checker for quantitative biological pathway models. MIRACH: efficient model checker for quantitative biological pathway models. MIRACH: efficient model checker for quantitative biological pathway models. Bioinformatics (Oxford, England), 27, 5, 734-735 Bioinformatics (Oxford, England), 27, 5, 734-735 Bioinformatics (Oxford, England), 27, 5, 734-735 2011/03 英語 研究論文(学術雑誌) 公開
Jeong E, Nagasaki M, Ueno K, Miyano S Jeong E, Nagasaki M, Ueno K, Miyano S Jeong E, Nagasaki M, Ueno K, Miyano S Ontology-based instance data validation for high-quality curated biological pathways. Ontology-based instance data validation for high-quality curated biological pathways. Ontology-based instance data validation for high-quality curated biological pathways. BMC bioinformatics, 12 Suppl 1,  , S8-S8 BMC bioinformatics, 12 Suppl 1,  , S8-S8 BMC bioinformatics, 12 Suppl 1,  , S8-S8 2011/02 英語 研究論文(学術雑誌) 公開
Doi A, Fujita S, Matsuno H, Nagasaki M, Miyano S Doi A, Fujita S, Matsuno H, Nagasaki M, Miyano S Doi A, Fujita S, Matsuno H, Nagasaki M, Miyano S Constructing biological pathway models with hybrid functional petri nets. Constructing biological pathway models with hybrid functional petri nets. Constructing biological pathway models with hybrid functional petri nets. Studies in health technology and informatics, 162,  , 92-112 Studies in health technology and informatics, 162,  , 92-112 Studies in health technology and informatics, 162,  , 92-112 2011 英語 研究論文(学術雑誌) 公開
Doi A, Nagasaki M, Matsuno H, Miyano S Doi A, Nagasaki M, Matsuno H, Miyano S Doi A, Nagasaki M, Matsuno H, Miyano S Simulation-Based Validation of the p53 Transcriptional Activity with Hybrid Functional Petri Net. Simulation-Based Validation of the p53 Transcriptional Activity with Hybrid Functional Petri Net. Simulation-Based Validation of the p53 Transcriptional Activity with Hybrid Functional Petri Net. Studies in health technology and informatics, 162,  , 130-142 Studies in health technology and informatics, 162,  , 130-142 Studies in health technology and informatics, 162,  , 130-142 2011 英語 研究論文(学術雑誌) 公開
Nagasaki M, Saito A, Jeong E, Li C, Kojima K, Ikeda E, Miyano S Nagasaki M, Saito A, Jeong E, Li C, Kojima K, Ikeda E, Miyano S Nagasaki M, Saito A, Jeong E, Li C, Kojima K, Ikeda E, Miyano S Cell illustrator 4.0: a computational platform for systems biology. Cell illustrator 4.0: a computational platform for systems biology. Cell illustrator 4.0: a computational platform for systems biology. Studies in health technology and informatics, 162,  , 160-181 Studies in health technology and informatics, 162,  , 160-181 Studies in health technology and informatics, 162,  , 160-181 2011 英語 研究論文(学術雑誌) 公開
Kaufmann K, Nagasaki M, Jáuregui R Kaufmann K, Nagasaki M, Jáuregui R Kaufmann K, Nagasaki M, Jáuregui R Modelling the Molecular Interactions in the Flower Developmental Network of Arabidopsis thaliana. Modelling the Molecular Interactions in the Flower Developmental Network of Arabidopsis thaliana. Modelling the Molecular Interactions in the Flower Developmental Network of Arabidopsis thaliana. Studies in health technology and informatics, 162,  , 279-297 Studies in health technology and informatics, 162,  , 279-297 Studies in health technology and informatics, 162,  , 279-297 2011 英語 研究論文(学術雑誌) 公開
Shimamura T, Imoto S, Shimada Y, Hosono Y, Niida A, Nagasaki M, Yamaguchi R, Takahashi T, Miyano S Shimamura T, Imoto S, Shimada Y, Hosono Y, Niida A, Nagasaki M, Yamaguchi R, Takahashi T, Miyano S Shimamura T, Imoto S, Shimada Y, Hosono Y, Niida A, Nagasaki M, Yamaguchi R, Takahashi T, Miyano S A novel network profiling analysis reveals system changes in epithelial-mesenchymal transition. A novel network profiling analysis reveals system changes in epithelial-mesenchymal transition. A novel network profiling analysis reveals system changes in epithelial-mesenchymal transition. PloS one, 6, 6, e20804-e20804 PloS one, 6, 6, e20804-e20804 PloS one, 6, 6, e20804-e20804 2011 英語 研究論文(学術雑誌) 公開
Tamada Y, Shimamura T, Yamaguchi R, Imoto S, Nagasaki M, Miyano S Tamada Y, Shimamura T, Yamaguchi R, Imoto S, Nagasaki M, Miyano S Tamada Y, Shimamura T, Yamaguchi R, Imoto S, Nagasaki M, Miyano S Sign: large-scale gene network estimation environment for high performance computing. Sign: large-scale gene network estimation environment for high performance computing. Sign: large-scale gene network estimation environment for high performance computing. Genome informatics. International Conference on Genome Informatics, 25, 1, 40-52 Genome informatics. International Conference on Genome Informatics, 25, 1, 40-52 Genome informatics. International Conference on Genome Informatics, 25, 1, 40-52 2011 英語 研究論文(学術雑誌) 公開
Yamauchi M, Yoshino I, Yamaguchi R, Shimamura T, Nagasaki M, Imoto S, Niida A, Koizumi F, Kohno T, Yokota J, Miyano S, Gotoh N Yamauchi M, Yoshino I, Yamaguchi R, Shimamura T, Nagasaki M, Imoto S, Niida A, Koizumi F, Kohno T, Yokota J, Miyano S, Gotoh N Yamauchi M, Yoshino I, Yamaguchi R, Shimamura T, Nagasaki M, Imoto S, Niida A, Koizumi F, Kohno T, Yokota J, Miyano S, Gotoh N N-cadherin expression is a potential survival mechanism of gefitinib-resistant lung cancer cells. N-cadherin expression is a potential survival mechanism of gefitinib-resistant lung cancer cells. N-cadherin expression is a potential survival mechanism of gefitinib-resistant lung cancer cells. American journal of cancer research, 1, 7, 823-833 American journal of cancer research, 1, 7, 823-833 American journal of cancer research, 1, 7, 823-833 2011 英語 研究論文(学術雑誌) 公開
Niida A, Imoto S, Yamaguchi R, Nagasaki M, Fujita A, Shimamura T, Miyano S Niida A, Imoto S, Yamaguchi R, Nagasaki M, Fujita A, Shimamura T, Miyano S Niida A, Imoto S, Yamaguchi R, Nagasaki M, Fujita A, Shimamura T, Miyano S Model-free unsupervised gene set screening based on information enrichment in expression profiles. Model-free unsupervised gene set screening based on information enrichment in expression profiles. Model-free unsupervised gene set screening based on information enrichment in expression profiles. Bioinformatics (Oxford, England), 26, 24, 3090-3097 Bioinformatics (Oxford, England), 26, 24, 3090-3097 Bioinformatics (Oxford, England), 26, 24, 3090-3097 2010/12 英語 研究論文(学術雑誌) 公開
Fujimoto A, Nakagawa H, Hosono N, Nakano K, Abe T, Boroevich KA, Nagasaki M, Yamaguchi R, Shibuya T, Kubo M, Miyano S, Nakamura Y, Tsunoda T Fujimoto A, Nakagawa H, Hosono N, Nakano K, Abe T, Boroevich KA, Nagasaki M, Yamaguchi R, Shibuya T, Kubo M, Miyano S, Nakamura Y, Tsunoda T Fujimoto A, Nakagawa H, Hosono N, Nakano K, Abe T, Boroevich KA, Nagasaki M, Yamaguchi R, Shibuya T, Kubo M, Miyano S, Nakamura Y, Tsunoda T Whole-genome sequencing and comprehensive variant analysis of a Japanese individual using massively parallel sequencing. Whole-genome sequencing and comprehensive variant analysis of a Japanese individual using massively parallel sequencing. Whole-genome sequencing and comprehensive variant analysis of a Japanese individual using massively parallel sequencing. Nature genetics, 42, 11, 931-936 Nature genetics, 42, 11, 931-936 Nature genetics, 42, 11, 931-936 2010/11 英語 研究論文(学術雑誌) 公開
Tasaki S, Nagasaki M, Kozuka-Hata H, Semba K, Gotoh N, Hattori S, Inoue J, Yamamoto T, Miyano S, Sugano S, Oyama M Tasaki S, Nagasaki M, Kozuka-Hata H, Semba K, Gotoh N, Hattori S, Inoue J, Yamamoto T, Miyano S, Sugano S, Oyama M Tasaki S, Nagasaki M, Kozuka-Hata H, Semba K, Gotoh N, Hattori S, Inoue J, Yamamoto T, Miyano S, Sugano S, Oyama M Phosphoproteomics-based modeling defines the regulatory mechanism underlying aberrant EGFR signaling. Phosphoproteomics-based modeling defines the regulatory mechanism underlying aberrant EGFR signaling. Phosphoproteomics-based modeling defines the regulatory mechanism underlying aberrant EGFR signaling. PloS one, 5, 11, e13926-e13926 PloS one, 5, 11, e13926-e13926 PloS one, 5, 11, e13926-e13926 2010/11 英語 研究論文(学術雑誌) 公開
Koh CH, Nagasaki M, Saito A, Wong L, Miyano S Koh CH, Nagasaki M, Saito A, Wong L, Miyano S Koh CH, Nagasaki M, Saito A, Wong L, Miyano S DA 1.0: parameter estimation of biological pathways using data assimilation approach. DA 1.0: parameter estimation of biological pathways using data assimilation approach. DA 1.0: parameter estimation of biological pathways using data assimilation approach. Bioinformatics (Oxford, England), 26, 14, 1794-1796 Bioinformatics (Oxford, England), 26, 14, 1794-1796 Bioinformatics (Oxford, England), 26, 14, 1794-1796 2010/07 英語 研究論文(学術雑誌) 公開
Do JH, Nagasaki M, Miyano S Do JH, Nagasaki M, Miyano S Do JH, Nagasaki M, Miyano S The systems approach to the prespore-specific activation of sigma factor SigF in Bacillus subtilis. The systems approach to the prespore-specific activation of sigma factor SigF in Bacillus subtilis. The systems approach to the prespore-specific activation of sigma factor SigF in Bacillus subtilis. Bio Systems, 100, 3, 178-184 Bio Systems, 100, 3, 178-184 Bio Systems, 100, 3, 178-184 2010/06 英語 研究論文(学術雑誌) 公開
Niida A, Imoto S, Yamaguchi R, Nagasaki M, Miyano S Niida A, Imoto S, Yamaguchi R, Nagasaki M, Miyano S Niida A, Imoto S, Yamaguchi R, Nagasaki M, Miyano S Gene set-based module discovery decodes cis-regulatory codes governing diverse gene expression across human multiple tissues. Gene set-based module discovery decodes cis-regulatory codes governing diverse gene expression across human multiple tissues. Gene set-based module discovery decodes cis-regulatory codes governing diverse gene expression across human multiple tissues. PloS one, 5, 6, e10910-e10910 PloS one, 5, 6, e10910-e10910 PloS one, 5, 6, e10910-e10910 2010/06 英語 研究論文(学術雑誌) 公開
Kojima K, Nagasaki M, Miyano S Kojima K, Nagasaki M, Miyano S Kojima K, Nagasaki M, Miyano S An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information. An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information. An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information. BMC bioinformatics, 11,  , 335-335 BMC bioinformatics, 11,  , 335-335 BMC bioinformatics, 11,  , 335-335 2010/06 英語 研究論文(学術雑誌) 公開
Shimamura T, Imoto S, Yamaguchi R, Nagasaki M, Miyano S Shimamura T, Imoto S, Yamaguchi R, Nagasaki M, Miyano S Shimamura T, Imoto S, Yamaguchi R, Nagasaki M, Miyano S Inferring dynamic gene networks under varying conditions for transcriptomic network comparison. Inferring dynamic gene networks under varying conditions for transcriptomic network comparison. Inferring dynamic gene networks under varying conditions for transcriptomic network comparison. Bioinformatics (Oxford, England), 26, 8, 1064-1072 Bioinformatics (Oxford, England), 26, 8, 1064-1072 Bioinformatics (Oxford, England), 26, 8, 1064-1072 2010/04 英語 研究論文(学術雑誌) 公開
Li C, Nagasaki M, Saito A, Miyano S Li C, Nagasaki M, Saito A, Miyano S Li C, Nagasaki M, Saito A, Miyano S Time-dependent structural transformation analysis to high-level Petri net model with active state transition diagram. Time-dependent structural transformation analysis to high-level Petri net model with active state transition diagram. Time-dependent structural transformation analysis to high-level Petri net model with active state transition diagram. BMC systems biology, 4,  , 39-39 BMC systems biology, 4,  , 39-39 BMC systems biology, 4,  , 39-39 2010/04 英語 研究論文(学術雑誌) 公開
Kojima K, Yamaguchi R, Imoto S, Yamauchi M, Nagasaki M, Yoshida R, Shimamura T, Ueno K, Higuchi T, Gotoh N, Miyano S Kojima K, Yamaguchi R, Imoto S, Yamauchi M, Nagasaki M, Yoshida R, Shimamura T, Ueno K, Higuchi T, Gotoh N, Miyano S Kojima K, Yamaguchi R, Imoto S, Yamauchi M, Nagasaki M, Yoshida R, Shimamura T, Ueno K, Higuchi T, Gotoh N, Miyano S A state space representation of VAR models with sparse learning for dynamic gene networks. A state space representation of VAR models with sparse learning for dynamic gene networks. A state space representation of VAR models with sparse learning for dynamic gene networks. Genome informatics. International Conference on Genome Informatics, 22,  , 56-68 Genome informatics. International Conference on Genome Informatics, 22,  , 56-68 Genome informatics. International Conference on Genome Informatics, 22,  , 56-68 2010/01 英語 研究論文(学術雑誌) 公開
Niida A, Imoto S, Nagasaki M, Yamaguchi R, Miyano S Niida A, Imoto S, Nagasaki M, Yamaguchi R, Miyano S Niida A, Imoto S, Nagasaki M, Yamaguchi R, Miyano S A novel meta-analysis approach of cancer transcriptomes reveals prevailing transcriptional networks in cancer cells. A novel meta-analysis approach of cancer transcriptomes reveals prevailing transcriptional networks in cancer cells. A novel meta-analysis approach of cancer transcriptomes reveals prevailing transcriptional networks in cancer cells. Genome informatics. International Conference on Genome Informatics, 22,  , 121-131 Genome informatics. International Conference on Genome Informatics, 22,  , 121-131 Genome informatics. International Conference on Genome Informatics, 22,  , 121-131 2010/01 英語 研究論文(学術雑誌) 公開
Fujita A, Nagasaki M, Imoto S, Saito A, Ikeda E, Shimamura T, Yamaguchi R, Hayashizaki Y, Miyano S Fujita A, Nagasaki M, Imoto S, Saito A, Ikeda E, Shimamura T, Yamaguchi R, Hayashizaki Y, Miyano S Fujita A, Nagasaki M, Imoto S, Saito A, Ikeda E, Shimamura T, Yamaguchi R, Hayashizaki Y, Miyano S Comparison of gene expression profiles produced by CAGE, illumina microarray and real time RT-PCR. Comparison of gene expression profiles produced by CAGE, illumina microarray and real time RT-PCR. Comparison of gene expression profiles produced by CAGE, illumina microarray and real time RT-PCR. Genome informatics. International Conference on Genome Informatics, 24,  , 56-68 Genome informatics. International Conference on Genome Informatics, 24,  , 56-68 Genome informatics. International Conference on Genome Informatics, 24,  , 56-68 2010 英語 研究論文(学術雑誌) 公開
Kojima K, Imoto S, Nagasaki M, Miyano S Kojima K, Imoto S, Nagasaki M, Miyano S Kojima K, Imoto S, Nagasaki M, Miyano S Gene regulatory network clustering for graph layout based on microarray gene expression data. Gene regulatory network clustering for graph layout based on microarray gene expression data. Gene regulatory network clustering for graph layout based on microarray gene expression data. Genome informatics. International Conference on Genome Informatics, 24,  , 84-95 Genome informatics. International Conference on Genome Informatics, 24,  , 84-95 Genome informatics. International Conference on Genome Informatics, 24,  , 84-95 2010 英語 研究論文(学術雑誌) 公開
Shimamura T, Imoto S, Nagasaki M, Yamauchi M, Yamaguchi R, Fujita A, Tamada Y, Gotoh N, Miyano S Shimamura T, Imoto S, Nagasaki M, Yamauchi M, Yamaguchi R, Fujita A, Tamada Y, Gotoh N, Miyano S Shimamura T, Imoto S, Nagasaki M, Yamauchi M, Yamaguchi R, Fujita A, Tamada Y, Gotoh N, Miyano S Collocation-based sparse estimation for constructing dynamic gene networks. Collocation-based sparse estimation for constructing dynamic gene networks. Collocation-based sparse estimation for constructing dynamic gene networks. Genome informatics. International Conference on Genome Informatics, 24,  , 164-178 Genome informatics. International Conference on Genome Informatics, 24,  , 164-178 Genome informatics. International Conference on Genome Informatics, 24,  , 164-178 2010 英語 研究論文(学術雑誌) 公開
Kaufmann K, Nagasaki M, Jáuregui R Kaufmann K, Nagasaki M, Jáuregui R Kaufmann K, Nagasaki M, Jáuregui R Modelling the molecular interactions in the flower developmental network of Arabidopsis thaliana. Modelling the molecular interactions in the flower developmental network of Arabidopsis thaliana. Modelling the molecular interactions in the flower developmental network of Arabidopsis thaliana. In silico biology, 10, 1, 125-143 In silico biology, 10, 1, 125-143 In silico biology, 10, 1, 125-143 2010 英語 研究論文(学術雑誌) 公開
Nagasaki M, Saito A, Jeong E, Li C, Kojima K, Ikeda E, Miyano S Nagasaki M, Saito A, Jeong E, Li C, Kojima K, Ikeda E, Miyano S Nagasaki M, Saito A, Jeong E, Li C, Kojima K, Ikeda E, Miyano S Cell Illustrator 4.0: a computational platform for systems biology. Cell Illustrator 4.0: a computational platform for systems biology. Cell Illustrator 4.0: a computational platform for systems biology. In silico biology, 10, 1, 5-26 In silico biology, 10, 1, 5-26 In silico biology, 10, 1, 5-26 2010 英語 研究論文(学術雑誌) 公開
Yoshikawa N, Nagasaki M, Sano M, Tokudome S, Ueno K, Shimizu N, Imoto S, Miyano S, Suematsu M, Fukuda K, Morimoto C, Tanaka H Yoshikawa N, Nagasaki M, Sano M, Tokudome S, Ueno K, Shimizu N, Imoto S, Miyano S, Suematsu M, Fukuda K, Morimoto C, Tanaka H Yoshikawa N, Nagasaki M, Sano M, Tokudome S, Ueno K, Shimizu N, Imoto S, Miyano S, Suematsu M, Fukuda K, Morimoto C, Tanaka H Ligand-based gene expression profiling reveals novel roles of glucocorticoid receptor in cardiac metabolism. Ligand-based gene expression profiling reveals novel roles of glucocorticoid receptor in cardiac metabolism. Ligand-based gene expression profiling reveals novel roles of glucocorticoid receptor in cardiac metabolism. American journal of physiology. Endocrinology and metabolism, 296, 6, E1363-73 American journal of physiology. Endocrinology and metabolism, 296, 6, E1363-73 American journal of physiology. Endocrinology and metabolism, 296, 6, E1363-73 2009/06 英語 研究論文(学術雑誌) 公開
Li C, Nagasaki M, Ueno K, Miyano S Li C, Nagasaki M, Ueno K, Miyano S Li C, Nagasaki M, Ueno K, Miyano S Simulation-based model checking approach to cell fate specification during Caenorhabditis elegans vulval development by hybrid functional Petri net with extension. Simulation-based model checking approach to cell fate specification during Caenorhabditis elegans vulval development by hybrid functional Petri net with extension. Simulation-based model checking approach to cell fate specification during Caenorhabditis elegans vulval development by hybrid functional Petri net with extension. BMC systems biology, 3,  , 42-42 BMC systems biology, 3,  , 42-42 BMC systems biology, 3,  , 42-42 2009/04 英語 研究論文(学術雑誌) 公開
Shimamura T, Imoto S, Yamaguchi R, Fujita A, Nagasaki M, Miyano S Shimamura T, Imoto S, Yamaguchi R, Fujita A, Nagasaki M, Miyano S Shimamura T, Imoto S, Yamaguchi R, Fujita A, Nagasaki M, Miyano S Recursive regularization for inferring gene networks from time-course gene expression profiles. Recursive regularization for inferring gene networks from time-course gene expression profiles. Recursive regularization for inferring gene networks from time-course gene expression profiles. BMC systems biology, 3,  , 41-41 BMC systems biology, 3,  , 41-41 BMC systems biology, 3,  , 41-41 2009/04 英語 研究論文(学術雑誌) 公開
Hashimoto TB, Nagasaki M, Kojima K, Miyano S Hashimoto TB, Nagasaki M, Kojima K, Miyano S Hashimoto TB, Nagasaki M, Kojima K, Miyano S BFL: a node and edge betweenness based fast layout algorithm for large scale networks. BFL: a node and edge betweenness based fast layout algorithm for large scale networks. BFL: a node and edge betweenness based fast layout algorithm for large scale networks. BMC bioinformatics, 10,  , 19-19 BMC bioinformatics, 10,  , 19-19 BMC bioinformatics, 10,  , 19-19 2009/01 英語 研究論文(学術雑誌) 公開
Araki H, Tamada Y, Imoto S, Dunmore B, Sanders D, Humphrey S, Nagasaki M, Doi A, Nakanishi Y, Yasuda K, Tomiyasu Y, Tashiro K, Print C, Charnock-Jones DS, Kuhara S, Miyano S Araki H, Tamada Y, Imoto S, Dunmore B, Sanders D, Humphrey S, Nagasaki M, Doi A, Nakanishi Y, Yasuda K, Tomiyasu Y, Tashiro K, Print C, Charnock-Jones DS, Kuhara S, Miyano S Araki H, Tamada Y, Imoto S, Dunmore B, Sanders D, Humphrey S, Nagasaki M, Doi A, Nakanishi Y, Yasuda K, Tomiyasu Y, Tashiro K, Print C, Charnock-Jones DS, Kuhara S, Miyano S Analysis of PPARalpha-dependent and PPARalpha-independent transcript regulation following fenofibrate treatment of human endothelial cells. Analysis of PPARalpha-dependent and PPARalpha-independent transcript regulation following fenofibrate treatment of human endothelial cells. Analysis of PPARalpha-dependent and PPARalpha-independent transcript regulation following fenofibrate treatment of human endothelial cells. Angiogenesis, 12, 3, 221-229 Angiogenesis, 12, 3, 221-229 Angiogenesis, 12, 3, 221-229 2009 英語 研究論文(学術雑誌) 公開
Watanabe-Fukuda Y, Yamamoto M, Miura N, Fukutake M, Ishige A, Yamaguchi R, Nagasaki M, Saito A, Imoto S, Miyano S, Takeda J, Watanabe K Watanabe-Fukuda Y, Yamamoto M, Miura N, Fukutake M, Ishige A, Yamaguchi R, Nagasaki M, Saito A, Imoto S, Miyano S, Takeda J, Watanabe K Watanabe-Fukuda Y, Yamamoto M, Miura N, Fukutake M, Ishige A, Yamaguchi R, Nagasaki M, Saito A, Imoto S, Miyano S, Takeda J, Watanabe K Orengedokuto and berberine improve indomethacin-induced small intestinal injury via adenosine. Orengedokuto and berberine improve indomethacin-induced small intestinal injury via adenosine. Orengedokuto and berberine improve indomethacin-induced small intestinal injury via adenosine. Journal of gastroenterology, 44, 5, 380-389 Journal of gastroenterology, 44, 5, 380-389 Journal of gastroenterology, 44, 5, 380-389 2009 英語 研究論文(学術雑誌) 公開
Tamada Y, Araki H, Imoto S, Nagasaki M, Doi A, Nakanishi Y, Tomiyasu Y, Yasuda K, Dunmore B, Sanders D, Humphreys S, Print C, Charnock-Jones DS, Tashiro K, Kuhara S, Miyano S Tamada Y, Araki H, Imoto S, Nagasaki M, Doi A, Nakanishi Y, Tomiyasu Y, Yasuda K, Dunmore B, Sanders D, Humphreys S, Print C, Charnock-Jones DS, Tashiro K, Kuhara S, Miyano S Tamada Y, Araki H, Imoto S, Nagasaki M, Doi A, Nakanishi Y, Tomiyasu Y, Yasuda K, Dunmore B, Sanders D, Humphreys S, Print C, Charnock-Jones DS, Tashiro K, Kuhara S, Miyano S Unraveling dynamic activities of autocrine pathways that control drug-response transcriptome networks. Unraveling dynamic activities of autocrine pathways that control drug-response transcriptome networks. Unraveling dynamic activities of autocrine pathways that control drug-response transcriptome networks. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing,  ,  , 251-263 Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing,  ,  , 251-263 Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing,  ,  , 251-263 2009 英語 研究論文(学術雑誌) 公開
Nakamura K, Yoshida R, Nagasaki M, Miyano S, Higuchi T Nakamura K, Yoshida R, Nagasaki M, Miyano S, Higuchi T Nakamura K, Yoshida R, Nagasaki M, Miyano S, Higuchi T Parameter estimation of in silico biological pathways with particle filtering towards a petascale computing. Parameter estimation of in silico biological pathways with particle filtering towards a petascale computing. Parameter estimation of in silico biological pathways with particle filtering towards a petascale computing. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing,  ,  , 227-238 Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing,  ,  , 227-238 Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing,  ,  , 227-238 2009 英語 研究論文(学術雑誌) 公開
Numata K, Yoshida R, Nagasaki M, Saito A, Imoto S, Miyano S Numata K, Yoshida R, Nagasaki M, Saito A, Imoto S, Miyano S Numata K, Yoshida R, Nagasaki M, Saito A, Imoto S, Miyano S ExonMiner: Web service for analysis of GeneChip Exon array data. ExonMiner: Web service for analysis of GeneChip Exon array data. ExonMiner: Web service for analysis of GeneChip Exon array data. BMC bioinformatics, 9,  , 494-494 BMC bioinformatics, 9,  , 494-494 BMC bioinformatics, 9,  , 494-494 2008/11 英語 研究論文(学術雑誌) 公開
Yoshida R, Nagasaki M, Yamaguchi R, Imoto S, Miyano S, Higuchi T Yoshida R, Nagasaki M, Yamaguchi R, Imoto S, Miyano S, Higuchi T Yoshida R, Nagasaki M, Yamaguchi R, Imoto S, Miyano S, Higuchi T Bayesian learning of biological pathways on genomic data assimilation. Bayesian learning of biological pathways on genomic data assimilation. Bayesian learning of biological pathways on genomic data assimilation. Bioinformatics (Oxford, England), 24, 22, 2592-2601 Bioinformatics (Oxford, England), 24, 22, 2592-2601 Bioinformatics (Oxford, England), 24, 22, 2592-2601 2008/11 英語 研究論文(学術雑誌) 公開
Nagasaki M, Saito A, Li C, Jeong E, Miyano S Nagasaki M, Saito A, Li C, Jeong E, Miyano S Nagasaki M, Saito A, Li C, Jeong E, Miyano S Systematic reconstruction of TRANSPATH data into cell system markup language. Systematic reconstruction of TRANSPATH data into cell system markup language. Systematic reconstruction of TRANSPATH data into cell system markup language. BMC systems biology, 2,  , 53-53 BMC systems biology, 2,  , 53-53 BMC systems biology, 2,  , 53-53 2008/06 英語 研究論文(学術雑誌) 公開
Kojima K, Nagasaki M, Miyano S Kojima K, Nagasaki M, Miyano S Kojima K, Nagasaki M, Miyano S Fast grid layout algorithm for biological networks with sweep calculation. Fast grid layout algorithm for biological networks with sweep calculation. Fast grid layout algorithm for biological networks with sweep calculation. Bioinformatics (Oxford, England), 24, 12, 1433-1441 Bioinformatics (Oxford, England), 24, 12, 1433-1441 Bioinformatics (Oxford, England), 24, 12, 1433-1441 2008/06 英語 研究論文(学術雑誌) 公開
Yamaguchi R, Imoto S, Yamauchi M, Nagasaki M, Yoshida R, Shimamura T, Hatanaka Y, Ueno K, Higuchi T, Gotoh N, Miyano S Yamaguchi R, Imoto S, Yamauchi M, Nagasaki M, Yoshida R, Shimamura T, Hatanaka Y, Ueno K, Higuchi T, Gotoh N, Miyano S Yamaguchi R, Imoto S, Yamauchi M, Nagasaki M, Yoshida R, Shimamura T, Hatanaka Y, Ueno K, Higuchi T, Gotoh N, Miyano S Predicting differences in gene regulatory systems by state space models. Predicting differences in gene regulatory systems by state space models. Predicting differences in gene regulatory systems by state space models. Genome informatics. International Conference on Genome Informatics, 21,  , 101-113 Genome informatics. International Conference on Genome Informatics, 21,  , 101-113 Genome informatics. International Conference on Genome Informatics, 21,  , 101-113 2008 英語 研究論文(学術雑誌) 公開
Hatanaka Y, Nagasaki M, Yamaguchi R, Obayashi T, Numata K, Fujita A, Shimamura T, Tamada Y, Imoto S, Kinoshita K, Nakai K, Miyano S Hatanaka Y, Nagasaki M, Yamaguchi R, Obayashi T, Numata K, Fujita A, Shimamura T, Tamada Y, Imoto S, Kinoshita K, Nakai K, Miyano S Hatanaka Y, Nagasaki M, Yamaguchi R, Obayashi T, Numata K, Fujita A, Shimamura T, Tamada Y, Imoto S, Kinoshita K, Nakai K, Miyano S A novel strategy to search conserved transcription factor binding sites among coexpressing genes in human. A novel strategy to search conserved transcription factor binding sites among coexpressing genes in human. A novel strategy to search conserved transcription factor binding sites among coexpressing genes in human. Genome informatics. International Conference on Genome Informatics, 20,  , 212-221 Genome informatics. International Conference on Genome Informatics, 20,  , 212-221 Genome informatics. International Conference on Genome Informatics, 20,  , 212-221 2008 英語 研究論文(学術雑誌) 公開
Jeong E, Nagasaki M, Miyano S Jeong E, Nagasaki M, Miyano S Jeong E, Nagasaki M, Miyano S Rule-based reasoning for system dynamics in cell systems. Rule-based reasoning for system dynamics in cell systems. Rule-based reasoning for system dynamics in cell systems. Genome informatics. International Conference on Genome Informatics, 20,  , 25-36 Genome informatics. International Conference on Genome Informatics, 20,  , 25-36 Genome informatics. International Conference on Genome Informatics, 20,  , 25-36 2008 英語 研究論文(学術雑誌) 公開
Kojima K, Nagasaki M, Jeong E, Kato M, Miyano S Kojima K, Nagasaki M, Jeong E, Kato M, Miyano S Kojima K, Nagasaki M, Jeong E, Kato M, Miyano S An efficient grid layout algorithm for biological networks utilizing various biological attributes. An efficient grid layout algorithm for biological networks utilizing various biological attributes. An efficient grid layout algorithm for biological networks utilizing various biological attributes. BMC bioinformatics, 8,  , 76-76 BMC bioinformatics, 8,  , 76-76 BMC bioinformatics, 8,  , 76-76 2007/03 英語 研究論文(学術雑誌) 公開
Saito A, Nagasaki M, Oyama M, Kozuka-Hata H, Semba K, Sugano S, Yamamoto T, Miyano S Saito A, Nagasaki M, Oyama M, Kozuka-Hata H, Semba K, Sugano S, Yamamoto T, Miyano S Saito A, Nagasaki M, Oyama M, Kozuka-Hata H, Semba K, Sugano S, Yamamoto T, Miyano S AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction. AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction. AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction. BMC bioinformatics, 8,  , 15-15 BMC bioinformatics, 8,  , 15-15 BMC bioinformatics, 8,  , 15-15 2007/01 英語 研究論文(学術雑誌) 公開
Jeong E, Nagasaki M, Miyano S Jeong E, Nagasaki M, Miyano S Jeong E, Nagasaki M, Miyano S Conversion from BioPAX to CSO for system dynamics and visualization of biological pathway. Conversion from BioPAX to CSO for system dynamics and visualization of biological pathway. Conversion from BioPAX to CSO for system dynamics and visualization of biological pathway. Genome informatics. International Conference on Genome Informatics, 18,  , 225-236 Genome informatics. International Conference on Genome Informatics, 18,  , 225-236 Genome informatics. International Conference on Genome Informatics, 18,  , 225-236 2007 英語 研究論文(学術雑誌) 公開
Yamaguchi R, Yamamoto M, Imoto S, Nagasaki M, Yoshida R, Tsuiji K, Ishige A, Asou H, Watanabe K, Miyano S Yamaguchi R, Yamamoto M, Imoto S, Nagasaki M, Yoshida R, Tsuiji K, Ishige A, Asou H, Watanabe K, Miyano S Yamaguchi R, Yamamoto M, Imoto S, Nagasaki M, Yoshida R, Tsuiji K, Ishige A, Asou H, Watanabe K, Miyano S Identification of activated transcription factors from microarray gene expression data of Kampo medicine-treated mice. Identification of activated transcription factors from microarray gene expression data of Kampo medicine-treated mice. Identification of activated transcription factors from microarray gene expression data of Kampo medicine-treated mice. Genome informatics. International Conference on Genome Informatics, 18,  , 119-129 Genome informatics. International Conference on Genome Informatics, 18,  , 119-129 Genome informatics. International Conference on Genome Informatics, 18,  , 119-129 2007 英語 研究論文(学術雑誌) 公開
Jeong E, Nagasaki M, Saito A, Miyano S Jeong E, Nagasaki M, Saito A, Miyano S Jeong E, Nagasaki M, Saito A, Miyano S Cell system ontology: representation for modeling, visualizing, and simulating biological pathways. Cell system ontology: representation for modeling, visualizing, and simulating biological pathways. Cell system ontology: representation for modeling, visualizing, and simulating biological pathways. In silico biology, 7, 6, 623-638 In silico biology, 7, 6, 623-638 In silico biology, 7, 6, 623-638 2007 英語 研究論文(学術雑誌) 公開
Tasaki S, Nagasaki M, Oyama M, Hata H, Ueno K, Yoshida R, Higuchi T, Sugano S, Miyano S Tasaki S, Nagasaki M, Oyama M, Hata H, Ueno K, Yoshida R, Higuchi T, Sugano S, Miyano S Tasaki S, Nagasaki M, Oyama M, Hata H, Ueno K, Yoshida R, Higuchi T, Sugano S, Miyano S Modeling and estimation of dynamic EGFR pathway by data assimilation approach using time series proteomic data. Modeling and estimation of dynamic EGFR pathway by data assimilation approach using time series proteomic data. Modeling and estimation of dynamic EGFR pathway by data assimilation approach using time series proteomic data. Genome informatics. International Conference on Genome Informatics, 17, 2, 226-238 Genome informatics. International Conference on Genome Informatics, 17, 2, 226-238 Genome informatics. International Conference on Genome Informatics, 17, 2, 226-238 2006 英語 研究論文(学術雑誌) 公開
Doi A, Nagasaki M, Ueno K, Matsuno H, Miyano S Doi A, Nagasaki M, Ueno K, Matsuno H, Miyano S Doi A, Nagasaki M, Ueno K, Matsuno H, Miyano S A combined pathway to simulate CDK-dependent phosphorylation and ARF-dependent stabilization for p53 transcriptional activity. A combined pathway to simulate CDK-dependent phosphorylation and ARF-dependent stabilization for p53 transcriptional activity. A combined pathway to simulate CDK-dependent phosphorylation and ARF-dependent stabilization for p53 transcriptional activity. Genome informatics. International Conference on Genome Informatics, 17, 1, 112-123 Genome informatics. International Conference on Genome Informatics, 17, 1, 112-123 Genome informatics. International Conference on Genome Informatics, 17, 1, 112-123 2006 英語 研究論文(学術雑誌) 公開
Saito A, Nagasaki M, Doi A, Ueno K, Miyano S Saito A, Nagasaki M, Doi A, Ueno K, Miyano S Saito A, Nagasaki M, Doi A, Ueno K, Miyano S Cell fate simulation model of gustatory neurons with MicroRNAs double-negative feedback loop by hybrid functional Petri net with extension. Cell fate simulation model of gustatory neurons with MicroRNAs double-negative feedback loop by hybrid functional Petri net with extension. Cell fate simulation model of gustatory neurons with MicroRNAs double-negative feedback loop by hybrid functional Petri net with extension. Genome informatics. International Conference on Genome Informatics, 17, 1, 100-111 Genome informatics. International Conference on Genome Informatics, 17, 1, 100-111 Genome informatics. International Conference on Genome Informatics, 17, 1, 100-111 2006 英語 研究論文(学術雑誌) 公開
Yoshida R, Numata K, Imoto S, Nagasaki M, Doi A, Ueno K, Miyano S Yoshida R, Numata K, Imoto S, Nagasaki M, Doi A, Ueno K, Miyano S Yoshida R, Numata K, Imoto S, Nagasaki M, Doi A, Ueno K, Miyano S A statistical framework for genome-wide discovery of biomarker splice variations with GeneChip Human Exon 1.0 ST Arrays. A statistical framework for genome-wide discovery of biomarker splice variations with GeneChip Human Exon 1.0 ST Arrays. A statistical framework for genome-wide discovery of biomarker splice variations with GeneChip Human Exon 1.0 ST Arrays. Genome informatics. International Conference on Genome Informatics, 17, 1, 88-99 Genome informatics. International Conference on Genome Informatics, 17, 1, 88-99 Genome informatics. International Conference on Genome Informatics, 17, 1, 88-99 2006 英語 研究論文(学術雑誌) 公開
Nagasaki M, Yamaguchi R, Yoshida R, Imoto S, Doi A, Tamada Y, Matsuno H, Miyano S, Higuchi T Nagasaki M, Yamaguchi R, Yoshida R, Imoto S, Doi A, Tamada Y, Matsuno H, Miyano S, Higuchi T Nagasaki M, Yamaguchi R, Yoshida R, Imoto S, Doi A, Tamada Y, Matsuno H, Miyano S, Higuchi T Genomic data assimilation for estimating hybrid functional Petri net from time-course gene expression data. Genomic data assimilation for estimating hybrid functional Petri net from time-course gene expression data. Genomic data assimilation for estimating hybrid functional Petri net from time-course gene expression data. Genome informatics. International Conference on Genome Informatics, 17, 1, 46-61 Genome informatics. International Conference on Genome Informatics, 17, 1, 46-61 Genome informatics. International Conference on Genome Informatics, 17, 1, 46-61 2006 英語 研究論文(学術雑誌) 公開
Doi A, Nagasaki M, Matsuno H, Miyano S Doi A, Nagasaki M, Matsuno H, Miyano S Doi A, Nagasaki M, Matsuno H, Miyano S Simulation-based validation of the p53 transcriptional activity with hybrid functional petri net. Simulation-based validation of the p53 transcriptional activity with hybrid functional petri net. Simulation-based validation of the p53 transcriptional activity with hybrid functional petri net. In silico biology, 6, 1-2, 1-13 In silico biology, 6, 1-2, 1-13 In silico biology, 6, 1-2, 1-13 2006 英語 研究論文(学術雑誌) 公開
Nagasaki M, Doi A, Miyano S Nagasaki M, Doi A, Miyano S Nagasaki M, Doi A, Miyano S [Dynamic pathway modeling language: CSML]. [Dynamic pathway modeling language: CSML]. [Dynamic pathway modeling language: CSML]. Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme, 50, 16 Suppl, 2269-2274 Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme, 50, 16 Suppl, 2269-2274 Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme, 50, 16 Suppl, 2269-2274 2005/12 英語 研究論文(学術雑誌) 公開
Kato M, Nagasaki M, Doi A, Miyano S Kato M, Nagasaki M, Doi A, Miyano S Kato M, Nagasaki M, Doi A, Miyano S Automatic drawing of biological networks using cross cost and subcomponent data. Automatic drawing of biological networks using cross cost and subcomponent data. Automatic drawing of biological networks using cross cost and subcomponent data. Genome informatics. International Conference on Genome Informatics, 16, 2, 22-31 Genome informatics. International Conference on Genome Informatics, 16, 2, 22-31 Genome informatics. International Conference on Genome Informatics, 16, 2, 22-31 2005 英語 研究論文(学術雑誌) 公開
Nagasaki M, Doi A, Matsuno H, Miyano S Nagasaki M, Doi A, Matsuno H, Miyano S Nagasaki M, Doi A, Matsuno H, Miyano S A versatile petri net based architecture for modeling and simulation of complex biological processes. A versatile petri net based architecture for modeling and simulation of complex biological processes. A versatile petri net based architecture for modeling and simulation of complex biological processes. Genome informatics. International Conference on Genome Informatics, 15, 1, 180-197 Genome informatics. International Conference on Genome Informatics, 15, 1, 180-197 Genome informatics. International Conference on Genome Informatics, 15, 1, 180-197 2004 英語 研究論文(学術雑誌) 公開
Doi A, Fujita S, Matsuno H, Nagasaki M, Miyano S Doi A, Fujita S, Matsuno H, Nagasaki M, Miyano S Doi A, Fujita S, Matsuno H, Nagasaki M, Miyano S Constructing biological pathway models with hybrid functional Petri nets. Constructing biological pathway models with hybrid functional Petri nets. Constructing biological pathway models with hybrid functional Petri nets. In silico biology, 4, 3, 271-291 In silico biology, 4, 3, 271-291 In silico biology, 4, 3, 271-291 2004 英語 研究論文(学術雑誌) 公開
Doi A, Nagasaki M, Fujita S, Matsuno H, Miyano S Doi A, Nagasaki M, Fujita S, Matsuno H, Miyano S Doi A, Nagasaki M, Fujita S, Matsuno H, Miyano S Genomic Object Net: II. Modelling biopathways by hybrid functional Petri net with extension. Genomic Object Net: II. Modelling biopathways by hybrid functional Petri net with extension. Genomic Object Net: II. Modelling biopathways by hybrid functional Petri net with extension. Applied bioinformatics, 2, 3, 185-188 Applied bioinformatics, 2, 3, 185-188 Applied bioinformatics, 2, 3, 185-188 2003 英語 研究論文(学術雑誌) 公開
Nagasaki M, Doi A, Matsuno H, Miyano S Nagasaki M, Doi A, Matsuno H, Miyano S Nagasaki M, Doi A, Matsuno H, Miyano S Genomic Object Net: I. A platform for modelling and simulating biopathways. Genomic Object Net: I. A platform for modelling and simulating biopathways. Genomic Object Net: I. A platform for modelling and simulating biopathways. Applied bioinformatics, 2, 3, 181-184 Applied bioinformatics, 2, 3, 181-184 Applied bioinformatics, 2, 3, 181-184 2003 英語 研究論文(学術雑誌) 公開

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