高田 彰二

最終更新日時: 2020/07/27 16:44:43

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氏名(漢字/フリガナ/アルファベット表記)
高田 彰二/タカダ ショウジ/Takada, Shoji
所属部署・職名(部局/所属/講座等/職名)
理学研究科/生物科学専攻機能統合学講座/教授
学部兼担
部局 所属 講座等 職名
理学部
連絡先住所
種別 住所(日本語) 住所(英語)
職場 京都市左京区北白川追分町 Dept of Biophysics, Grad School of Science, Kyoto University, Sakyo Kyoto 606-8502 Japan
連絡先電話番号
種別 番号
職場 075-753-4220
電子メールアドレス
メールアドレス
takada @ biophys.kyoto-u.ac.jp
取得学位
学位名(日本語) 学位名(英語) 大学(日本語) 大学(英語) 取得区分
理学修士 京都大学
博士(理学) 総合研究大学院大学
職歴
期間 組織名(日本語) 組織名(英語) 職名(日本語) 職名(英語)
researchmap URL
https://researchmap.jp/shoji_takada
論文
著者 著者(日本語) 著者(英語) タイトル タイトル(日本語) タイトル(英語) 書誌情報等 書誌情報等(日本語) 書誌情報等(英語) 出版年月 査読の有無 記述言語 掲載種別 公開
Shoji Takada, Giovanni B Brandani, Cheng Tan Shoji Takada, Giovanni B Brandani, Cheng Tan Shoji Takada, Giovanni B Brandani, Cheng Tan Nucleosomes as allosteric scaffolds for genetic regulation. Nucleosomes as allosteric scaffolds for genetic regulation. Nucleosomes as allosteric scaffolds for genetic regulation. Current opinion in structural biology, 62, 93-101 Current opinion in structural biology, 62, 93-101 Current opinion in structural biology, 62, 93-101 2020/06 英語 研究論文(学術雑誌) 公開
Shintaroh Kubo, Toru Niina, Shoji Takada Shintaroh Kubo, Toru Niina, Shoji Takada Shintaroh Kubo, Toru Niina, Shoji Takada Molecular dynamics simulation of proton-transfer coupled rotations in ATP synthase FO motor. Molecular dynamics simulation of proton-transfer coupled rotations in ATP synthase FO motor. Molecular dynamics simulation of proton-transfer coupled rotations in ATP synthase FO motor. Scientific reports, 10, 1, 8225-8225 Scientific reports, 10, 1, 8225-8225 Scientific reports, 10, 1, 8225-8225 2020/05/19 英語 研究論文(学術雑誌) 公開
Shintaroh Kubo, Tomohiro Shima, Shoji Takada Shintaroh Kubo, Tomohiro Shima, Shoji Takada Shintaroh Kubo, Tomohiro Shima, Shoji Takada How Cytoplasmic Dynein Couples ATP Hydrolysis Cycle to Diverse Stepping Motions: Kinetic Modeling. How Cytoplasmic Dynein Couples ATP Hydrolysis Cycle to Diverse Stepping Motions: Kinetic Modeling. How Cytoplasmic Dynein Couples ATP Hydrolysis Cycle to Diverse Stepping Motions: Kinetic Modeling. Biophysical journal, 118, 8, 1930-1945 Biophysical journal, 118, 8, 1930-1945 Biophysical journal, 118, 8, 1930-1945 2020/04/21 英語 研究論文(学術雑誌) 公開
Toru Niina, Sotaro Fuchigami, Shoji Takada Toru Niina, Sotaro Fuchigami, Shoji Takada Toru Niina, Sotaro Fuchigami, Shoji Takada Flexible Fitting of Biomolecular Structures to Atomic Force Microscopy Images via Biased Molecular Simulations. Flexible Fitting of Biomolecular Structures to Atomic Force Microscopy Images via Biased Molecular Simulations. Flexible Fitting of Biomolecular Structures to Atomic Force Microscopy Images via Biased Molecular Simulations. Journal of chemical theory and computation, 16, 2, 1349-1358 Journal of chemical theory and computation, 16, 2, 1349-1358 Journal of chemical theory and computation, 16, 2, 1349-1358 2020/02/11 英語 研究論文(学術雑誌) 公開
Ryo Kanada, Tsuyoshi Terakawa, Hiroo Kenzaki, Shoji Takada Ryo Kanada, Tsuyoshi Terakawa, Hiroo Kenzaki, Shoji Takada Ryo Kanada, Tsuyoshi Terakawa, Hiroo Kenzaki, Shoji Takada Nucleosome Crowding in Chromatin Slows the Diffusion but Can Promote Target Search of Proteins. Nucleosome Crowding in Chromatin Slows the Diffusion but Can Promote Target Search of Proteins. Nucleosome Crowding in Chromatin Slows the Diffusion but Can Promote Target Search of Proteins. Biophysical journal, 116, 12, 2285-2295 Biophysical journal, 116, 12, 2285-2295 Biophysical journal, 116, 12, 2285-2295 2019/06/18 英語 研究論文(学術雑誌) 公開
Wenfei Li, Jun Wang, Jian Zhang, Shoji Takada, Wei Wang Wenfei Li, Jun Wang, Jian Zhang, Shoji Takada, Wei Wang Wenfei Li, Jun Wang, Jian Zhang, Shoji Takada, Wei Wang Overcoming the Bottleneck of the Enzymatic Cycle by Steric Frustration. Overcoming the Bottleneck of the Enzymatic Cycle by Steric Frustration. Overcoming the Bottleneck of the Enzymatic Cycle by Steric Frustration. Physical review letters, 122, 23, 238102-238102 Physical review letters, 122, 23, 238102-238102 Physical review letters, 122, 23, 238102-238102 2019/06/14 英語 研究論文(学術雑誌) 公開
Shoji Takada Shoji Takada Shoji Takada Gō model revisited. Gō model revisited. Gō model revisited. Biophysics and physicobiology, 16, 248-255 Biophysics and physicobiology, 16, 248-255 Biophysics and physicobiology, 16, 248-255 2019 英語 研究論文(学術雑誌) 公開
Giovanni B Brandani, Shoji Takada Giovanni B Brandani, Shoji Takada Giovanni B Brandani, Shoji Takada Chromatin remodelers couple inchworm motion with twist-defect formation to slide nucleosomal DNA. Chromatin remodelers couple inchworm motion with twist-defect formation to slide nucleosomal DNA. Chromatin remodelers couple inchworm motion with twist-defect formation to slide nucleosomal DNA. PLoS computational biology, 14, 11, e1006512 PLoS computational biology, 14, 11, e1006512 PLoS computational biology, 14, 11, e1006512 2018/11 英語 研究論文(学術雑誌) 公開
Cheng Tan, Shoji Takada Cheng Tan, Shoji Takada Cheng Tan, Shoji Takada Dynamic and Structural Modeling of the Specificity in Protein-DNA Interactions Guided by Binding Assay and Structure Data. Dynamic and Structural Modeling of the Specificity in Protein-DNA Interactions Guided by Binding Assay and Structure Data. Dynamic and Structural Modeling of the Specificity in Protein-DNA Interactions Guided by Binding Assay and Structure Data. Journal of chemical theory and computation, 14, 7, 3877-3889 Journal of chemical theory and computation, 14, 7, 3877-3889 Journal of chemical theory and computation, 14, 7, 3877-3889 2018/07/10 英語 研究論文(学術雑誌) 公開
Watanabe S, Mishima Y, Shimizu M, Suetake I, Takada S Watanabe S, Mishima Y, Shimizu M, Suetake I, Takada S Shuhei Watanabe, Yuichi Mishima, Masahiro Shimizu, Isao Suetake, Shoji Takada Interactions of HP1 Bound to H3K9me3 Dinucleosome by Molecular Simulations and Biochemical Assays. Interactions of HP1 Bound to H3K9me3 Dinucleosome by Molecular Simulations and Biochemical Assays. Interactions of HP1 Bound to H3K9me3 Dinucleosome by Molecular Simulations and Biochemical Assays. Biophysical journal, 114, 10, 2336-2351 Biophysical journal, 114, 10, 2336-2351 Biophysical journal, 114, 10, 2336-2351 2018/05/22 英語 研究論文(学術雑誌) 公開
Giovanni B Brandani, Toru Niina, Cheng Tan, Shoji Takada Giovanni B Brandani, Toru Niina, Cheng Tan, Shoji Takada Giovanni B Brandani, Toru Niina, Cheng Tan, Shoji Takada DNA sliding in nucleosomes via twist defect propagation revealed by molecular simulations. DNA sliding in nucleosomes via twist defect propagation revealed by molecular simulations. DNA sliding in nucleosomes via twist defect propagation revealed by molecular simulations. Nucleic acids research, 46, 6, 2788-2801 Nucleic acids research, 46, 6, 2788-2801 Nucleic acids research, 46, 6, 2788-2801 2018/04/06 英語 研究論文(学術雑誌) 公開
Masahiro Shimizu, Shoji Takada Masahiro Shimizu, Shoji Takada Masahiro Shimizu, Shoji Takada Reconstruction of Atomistic Structures from Coarse-Grained Models for Protein-DNA Complexes. Reconstruction of Atomistic Structures from Coarse-Grained Models for Protein-DNA Complexes. Reconstruction of Atomistic Structures from Coarse-Grained Models for Protein-DNA Complexes. Journal of chemical theory and computation, 14, 3, 1682-1694 Journal of chemical theory and computation, 14, 3, 1682-1694 Journal of chemical theory and computation, 14, 3, 1682-1694 2018/03/13 英語 研究論文(学術雑誌) 公開
Toru Niina, Giovanni B Brandani, Cheng Tan, Shoji Takada Toru Niina, Giovanni B Brandani, Cheng Tan, Shoji Takada Toru Niina, Giovanni B Brandani, Cheng Tan, Shoji Takada Sequence-dependent nucleosome sliding in rotation-coupled and uncoupled modes revealed by molecular simulations. Sequence-dependent nucleosome sliding in rotation-coupled and uncoupled modes revealed by molecular simulations. Sequence-dependent nucleosome sliding in rotation-coupled and uncoupled modes revealed by molecular simulations. PLoS computational biology, 13, 12, e1005880 PLoS computational biology, 13, 12, e1005880 PLoS computational biology, 13, 12, e1005880 2017/12 英語 研究論文(学術雑誌) 公開
Shintaroh Kubo, Wenfei Li, Shoji Takada Shintaroh Kubo, Wenfei Li, Shoji Takada Shintaroh Kubo, Wenfei Li, Shoji Takada Allosteric conformational change cascade in cytoplasmic dynein revealed by structure-based molecular simulations. Allosteric conformational change cascade in cytoplasmic dynein revealed by structure-based molecular simulations. Allosteric conformational change cascade in cytoplasmic dynein revealed by structure-based molecular simulations. PLoS computational biology, 13, 9, e1005748 PLoS computational biology, 13, 9, e1005748 PLoS computational biology, 13, 9, e1005748 2017/09 英語 研究論文(学術雑誌) 公開
Mami Saito, Tsuyoshi Terakawa, Shoji Takada Mami Saito, Tsuyoshi Terakawa, Shoji Takada Mami Saito, Tsuyoshi Terakawa, Shoji Takada How one-dimensional diffusion of transcription factors are affected by obstacles: coarse-grained molecular dynamics study How one-dimensional diffusion of transcription factors are affected by obstacles: coarse-grained molecular dynamics study How one-dimensional diffusion of transcription factors are affected by obstacles: coarse-grained molecular dynamics study MOLECULAR SIMULATION, 43, 13-16, 1315-1321 MOLECULAR SIMULATION, 43, 13-16, 1315-1321 MOLECULAR SIMULATION, 43, 13-16, 1315-1321 2017 英語 研究論文(学術雑誌) 公開
Krah A, Kato-Yamada Y, Takada S Krah A, Kato-Yamada Y, Takada S Alexander Krah, Yasuyuki Kato-Yamada, Shoji Takada The structural basis of a high affinity ATP binding ε subunit from a bacterial ATP synthase. The structural basis of a high affinity ATP binding ε subunit from a bacterial ATP synthase. The structural basis of a high affinity ATP binding ε subunit from a bacterial ATP synthase. PloS one, 12, 5, e0177907 PloS one, 12, 5, e0177907 PloS one, 12, 5, e0177907 2017 英語 研究論文(学術雑誌) 公開
Masahiro Shimizu, Yasunori Noguchi, Yukari Sakiyama, Hironori Kawakami, Tsutomu Katayama, Shoji Takada Masahiro Shimizu, Yasunori Noguchi, Yukari Sakiyama, Hironori Kawakami, Tsutomu Katayama, Shoji Takada Masahiro Shimizu, Yasunori Noguchi, Yukari Sakiyama, Hironori Kawakami, Tsutomu Katayama, Shoji Takada Near-atomic structural model for bacterial DNA replication initiation complex and its functional insights. Near-atomic structural model for bacterial DNA replication initiation complex and its functional insights. Near-atomic structural model for bacterial DNA replication initiation complex and its functional insights. Proceedings of the National Academy of Sciences of the United States of America, 113, 50, E8021-E8030-E8030 Proceedings of the National Academy of Sciences of the United States of America, 113, 50, E8021-E8030-E8030 Proceedings of the National Academy of Sciences of the United States of America, 113, 50, E8021-E8030-E8030 2016/12/13 英語 研究論文(学術雑誌) 公開
Le Chang, Shoji Takada Le Chang, Shoji Takada Le Chang, Shoji Takada Histone acetylation dependent energy landscapes in tri-nucleosome revealed by residue-resolved molecular simulations. Histone acetylation dependent energy landscapes in tri-nucleosome revealed by residue-resolved molecular simulations. Histone acetylation dependent energy landscapes in tri-nucleosome revealed by residue-resolved molecular simulations. Scientific reports, 6, 34441-34441 Scientific reports, 6, 34441-34441 Scientific reports, 6, 34441-34441 2016/10/04 英語 研究論文(学術雑誌) 公開
Cheng Tan, Tsuyoshi Terakawa, Shoji Takada Cheng Tan, Tsuyoshi Terakawa, Shoji Takada Cheng Tan, Tsuyoshi Terakawa, Shoji Takada Dynamic Coupling among Protein Binding, Sliding, and DNA Bending Revealed by Molecular Dynamics. Dynamic Coupling among Protein Binding, Sliding, and DNA Bending Revealed by Molecular Dynamics. Dynamic Coupling among Protein Binding, Sliding, and DNA Bending Revealed by Molecular Dynamics. Journal of the American Chemical Society, 138, 27, 8512-22 Journal of the American Chemical Society, 138, 27, 8512-22 Journal of the American Chemical Society, 138, 27, 8512-22 2016/07/13 英語 研究論文(学術雑誌) 公開
Alexander Krah, Shoji Takada Alexander Krah, Shoji Takada Alexander Krah, Shoji Takada On the ATP binding site of the epsilon subunit from bacterial F-type ATP synthases On the ATP binding site of the epsilon subunit from bacterial F-type ATP synthases On the ATP binding site of the epsilon subunit from bacterial F-type ATP synthases BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 1857, 4, 332-340 BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 1857, 4, 332-340 BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 1857, 4, 332-340 2016/04 英語 研究論文(学術雑誌) 公開
Krah A, Takada S Krah A, Takada S Alexander Krah, Shoji Takada On the ATP binding site of the ε subunit from bacterial F-type ATP synthases. On the ATP binding site of the ε subunit from bacterial F-type ATP synthases. On the ATP binding site of the ε subunit from bacterial F-type ATP synthases. Biochimica et biophysica acta, 1857, 4, 332-40 Biochimica et biophysica acta, 1857, 4, 332-40 Biochimica et biophysica acta, 1857, 4, 332-40 2016/04 英語 研究論文(学術雑誌) 公開
Shoji Takada, Ryo Kanada, Cheng Tan, Tsuyoshi Terakawa, Wenfei Li, Hiroo Kenzaki Shoji Takada, Ryo Kanada, Cheng Tan, Tsuyoshi Terakawa, Wenfei Li, Hiroo Kenzaki Shoji Takada, Ryo Kanada, Cheng Tan, Tsuyoshi Terakawa, Wenfei Li, Hiroo Kenzaki Modeling Structural Dynamics of Biomolecular Complexes by Coarse-Grained Molecular Simulations Modeling Structural Dynamics of Biomolecular Complexes by Coarse-Grained Molecular Simulations Modeling Structural Dynamics of Biomolecular Complexes by Coarse-Grained Molecular Simulations ACCOUNTS OF CHEMICAL RESEARCH, 48, 12, 3026-3035 ACCOUNTS OF CHEMICAL RESEARCH, 48, 12, 3026-3035 ACCOUNTS OF CHEMICAL RESEARCH, 48, 12, 3026-3035 2015/12 英語 公開
Tsuyoshi Terakawa, Shoji Takada Tsuyoshi Terakawa, Shoji Takada Tsuyoshi Terakawa, Shoji Takada p53 dynamics upon response element recognition explored by molecular simulations p53 dynamics upon response element recognition explored by molecular simulations p53 dynamics upon response element recognition explored by molecular simulations SCIENTIFIC REPORTS, 5, 17107 SCIENTIFIC REPORTS, 5, 17107 SCIENTIFIC REPORTS, 5, 17107 2015/11 英語 研究論文(学術雑誌) 公開
Alexander Krah, Shoji Takada Alexander Krah, Shoji Takada Alexander Krah, Shoji Takada On the Mg<sup>2+</sup> binding site of the ε subunit from bacterial F-type ATP synthases On the Mg<sup>2+</sup> binding site of the ε subunit from bacterial F-type ATP synthases On the Mg2+ binding site of the epsilon subunit from bacterial F-type ATP synthases Biochimica et Biophysica Acta - Bioenergetics, 1847, 10, 1101-1112 Biochimica et Biophysica Acta - Bioenergetics, 1847, 10, 1101-1112 BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 1847, 10, 1101-1112 2015/10 英語 研究論文(学術雑誌) 公開
Hiroo Kenzaki, Shoji Takada Hiroo Kenzaki, Shoji Takada Hiroo Kenzaki, Shoji Takada Partial Unwrapping and Histone Tail Dynamics in Nucleosome Revealed by Coarse-Grained Molecular Simulations Partial Unwrapping and Histone Tail Dynamics in Nucleosome Revealed by Coarse-Grained Molecular Simulations Partial Unwrapping and Histone Tail Dynamics in Nucleosome Revealed by Coarse-Grained Molecular Simulations PLOS COMPUTATIONAL BIOLOGY, 11, 8 PLOS COMPUTATIONAL BIOLOGY, 11, 8 PLOS COMPUTATIONAL BIOLOGY, 11, 8 2015/08 英語 研究論文(学術雑誌) 公開
Tomohiro Tanaka, Naoto Hori, Shoji Takada Tomohiro Tanaka, Naoto Hori, Shoji Takada Tomohiro Tanaka, Naoto Hori, Shoji Takada How Co-translational Folding of Multidomain Protein Is Affected by Elongation Schedule: Molecular Simulations How Co-translational Folding of Multidomain Protein Is Affected by Elongation Schedule: Molecular Simulations How Co-translational Folding of Multidomain Protein Is Affected by Elongation Schedule: Molecular Simulations PLOS COMPUTATIONAL BIOLOGY, 11, 7 PLOS COMPUTATIONAL BIOLOGY, 11, 7 PLOS COMPUTATIONAL BIOLOGY, 11, 7 2015/07 英語 研究論文(学術雑誌) 公開
Junichi Ono, Shoji Takada, Shinji Saito Junichi Ono, Shoji Takada, Shinji Saito Junichi Ono, Shoji Takada, Shinji Saito Couplings between hierarchical conformational dynamics from multi-time correlation functions and two-dimensional lifetime spectra: Application to adenylate kinase Couplings between hierarchical conformational dynamics from multi-time correlation functions and two-dimensional lifetime spectra: Application to adenylate kinase Couplings between hierarchical conformational dynamics from multi-time correlation functions and two-dimensional lifetime spectra: Application to adenylate kinase JOURNAL OF CHEMICAL PHYSICS, 142, 21, 212404 JOURNAL OF CHEMICAL PHYSICS, 142, 21, 212404 JOURNAL OF CHEMICAL PHYSICS, 142, 21, 212404 2015/06 英語 研究論文(学術雑誌) 公開
Koji Ono, Mashiho Ito, Shun Hirota, Shoji Takada Koji Ono, Mashiho Ito, Shun Hirota, Shoji Takada Koji Ono, Mashiho Ito, Shun Hirota, Shoji Takada Dimer domain swapping versus monomer folding in apo-myoglobin studied by molecular simulations Dimer domain swapping versus monomer folding in apo-myoglobin studied by molecular simulations Dimer domain swapping versus monomer folding in apo-myoglobin studied by molecular simulations PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 17, 7, 5006-5013 PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 17, 7, 5006-5013 PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 17, 7, 5006-5013 2015 英語 研究論文(学術雑誌) 公開
Tsuyoshi Terakawa, Junichi Higo, Shoji Takada Tsuyoshi Terakawa, Junichi Higo, Shoji Takada Tsuyoshi Terakawa, Junichi Higo, Shoji Takada Multi-scale Ensemble Modeling of Modular Proteins with Intrinsically Disordered Linker Regions: Application to p53 Multi-scale Ensemble Modeling of Modular Proteins with Intrinsically Disordered Linker Regions: Application to p53 Multi-scale Ensemble Modeling of Modular Proteins with Intrinsically Disordered Linker Regions: Application to p53 BIOPHYSICAL JOURNAL, 107, 3, 721-729 BIOPHYSICAL JOURNAL, 107, 3, 721-729 BIOPHYSICAL JOURNAL, 107, 3, 721-729 2014/08 英語 研究論文(学術雑誌) 公開
Wenfei Li, Wei Wang, Shoji Takada Wenfei Li, Wei Wang, Shoji Takada Wenfei Li, Wei Wang, Shoji Takada Energy landscape views for interplays among folding, binding, and allostery of calmodulin domains Energy landscape views for interplays among folding, binding, and allostery of calmodulin domains Energy landscape views for interplays among folding, binding, and allostery of calmodulin domains PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 111, 29, 10550-10555 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 111, 29, 10550-10555 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 111, 29, 10550-10555 2014/07 英語 研究論文(学術雑誌) 公開
Tsuyoshi Terakawa, Shoji Takada Tsuyoshi Terakawa, Shoji Takada Tsuyoshi Terakawa, Shoji Takada RESPAC: Method to Determine Partial Charges in Coarse-Grained Protein Model and Its Application to DNA-Binding Proteins RESPAC: Method to Determine Partial Charges in Coarse-Grained Protein Model and Its Application to DNA-Binding Proteins RESPAC: Method to Determine Partial Charges in Coarse-Grained Protein Model and Its Application to DNA-Binding Proteins JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 10, 2, 711-721 JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 10, 2, 711-721 JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 10, 2, 711-721 2014/02 英語 研究論文(学術雑誌) 公開
Mashiho Ito, Takeaki Ozawa, Shoji Takada Mashiho Ito, Takeaki Ozawa, Shoji Takada Mashiho Ito, Takeaki Ozawa, Shoji Takada Folding Coupled with Assembly in Split Green Fluorescent Proteins Studied by Structure-based Molecular Simulations Folding Coupled with Assembly in Split Green Fluorescent Proteins Studied by Structure-based Molecular Simulations Folding Coupled with Assembly in Split Green Fluorescent Proteins Studied by Structure-based Molecular Simulations JOURNAL OF PHYSICAL CHEMISTRY B, 117, 42, 13212-13218 JOURNAL OF PHYSICAL CHEMISTRY B, 117, 42, 13212-13218 JOURNAL OF PHYSICAL CHEMISTRY B, 117, 42, 13212-13218 2013/10 英語 研究論文(学術雑誌) 公開
Yohei Murakami, Shoji Takada Yohei Murakami, Shoji Takada Yohei Murakami, Shoji Takada Bayesian Parameter Inference by Markov Chain Monte Carlo with Hybrid Fitness Measures: Theory and Test in Apoptosis Signal Transduction Network Bayesian Parameter Inference by Markov Chain Monte Carlo with Hybrid Fitness Measures: Theory and Test in Apoptosis Signal Transduction Network Bayesian Parameter Inference by Markov Chain Monte Carlo with Hybrid Fitness Measures: Theory and Test in Apoptosis Signal Transduction Network PLOS ONE, 8, 9 PLOS ONE, 8, 9 PLOS ONE, 8, 9 2013/09 英語 研究論文(学術雑誌) 公開
Matthew J. McGrath, I. -F. Will Kuo, Shigehiko Hayashi, Shoji Takada Matthew J. McGrath, I. -F. Will Kuo, Shigehiko Hayashi, Shoji Takada Matthew J. McGrath, I. -F. Will Kuo, Shigehiko Hayashi, Shoji Takada Adenosine Triphosphate Hydrolysis Mechanism in Kinesin Studied by Combined Quantum-Mechanical/Molecular-Mechanical Metadynamics Simulations Adenosine Triphosphate Hydrolysis Mechanism in Kinesin Studied by Combined Quantum-Mechanical/Molecular-Mechanical Metadynamics Simulations Adenosine Triphosphate Hydrolysis Mechanism in Kinesin Studied by Combined Quantum-Mechanical/Molecular-Mechanical Metadynamics Simulations JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 135, 24, 8908-8919 JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 135, 24, 8908-8919 JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 135, 24, 8908-8919 2013/06 英語 研究論文(学術雑誌) 公開
Xin-Qiu Yao, Nobuhiro Kimura, Satoshi Murakami, Shoji Takada Xin-Qiu Yao, Nobuhiro Kimura, Satoshi Murakami, Shoji Takada Xin-Qiu Yao, Nobuhiro Kimura, Satoshi Murakami, Shoji Takada Drug Uptake Pathways of Multidrug Transporter AcrB Studied by Molecular Simulations and Site-Directed Mutagenesis Experiments Drug Uptake Pathways of Multidrug Transporter AcrB Studied by Molecular Simulations and Site-Directed Mutagenesis Experiments Drug Uptake Pathways of Multidrug Transporter AcrB Studied by Molecular Simulations and Site-Directed Mutagenesis Experiments JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 135, 20, 7474-7485 JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 135, 20, 7474-7485 JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 135, 20, 7474-7485 2013/05 英語 研究論文(学術雑誌) 公開
Le Chang, Takeshi Ishikawa, Kazuo Kuwata, Shoji Takada Le Chang, Takeshi Ishikawa, Kazuo Kuwata, Shoji Takada Le Chang, Takeshi Ishikawa, Kazuo Kuwata, Shoji Takada Protein-specific force field derived from the fragment molecular orbital method can improve protein-ligand binding interactions Protein-specific force field derived from the fragment molecular orbital method can improve protein-ligand binding interactions Protein-specific force field derived from the fragment molecular orbital method can improve protein-ligand binding interactions JOURNAL OF COMPUTATIONAL CHEMISTRY, 34, 14, 1251-1257 JOURNAL OF COMPUTATIONAL CHEMISTRY, 34, 14, 1251-1257 JOURNAL OF COMPUTATIONAL CHEMISTRY, 34, 14, 1251-1257 2013/05 英語 研究論文(学術雑誌) 公開
R. Kanada, T. Kuwata, H. Kenzaki, S. Takada R. Kanada, T. Kuwata, H. Kenzaki, S. Takada R. Kanada, T. Kuwata, H. Kenzaki, S. Takada Structure-based Molecular Simulations Reveal the Enhancement of Biased Brownian Motions in Single-headed Kinesin Structure-based Molecular Simulations Reveal the Enhancement of Biased Brownian Motions in Single-headed Kinesin Structure-based Molecular Simulations Reveal the Enhancement of Biased Brownian Motions in Single-headed Kinesin PLoS Computational Biology, 9, 2 PLoS Computational Biology, 9, 2 PLoS Computational Biology, 9, 2 2013 英語 公開
Wenfei Li, Tsuyoshi Terakawa, Wei Wang, Shoji Takada Wenfei Li, Tsuyoshi Terakawa, Wei Wang, Shoji Takada Wenfei Li, Tsuyoshi Terakawa, Wei Wang, Shoji Takada Energy landscape and multiroute folding of topologically complex proteins adenylate kinase and 2ouf-knot Energy landscape and multiroute folding of topologically complex proteins adenylate kinase and 2ouf-knot Energy landscape and multiroute folding of topologically complex proteins adenylate kinase and 2ouf-knot PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109, 44, 17789-17794 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109, 44, 17789-17794 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109, 44, 17789-17794 2012/10 英語 研究論文(学術雑誌) 公開
Naoto Hori, Shoji Takada Naoto Hori, Shoji Takada Naoto Hori, Shoji Takada Coarse-Grained Structure-Based Model for RNA-Protein Complexes Developed by Fluctuation Matching Coarse-Grained Structure-Based Model for RNA-Protein Complexes Developed by Fluctuation Matching Coarse-Grained Structure-Based Model for RNA-Protein Complexes Developed by Fluctuation Matching JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 8, 9, 3384-3394 JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 8, 9, 3384-3394 JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 8, 9, 3384-3394 2012/09 英語 研究論文(学術雑誌) 公開
Tsuyoshi Terakawa, Hiroo Kenzaki, Shoji Takada Tsuyoshi Terakawa, Hiroo Kenzaki, Shoji Takada Tsuyoshi Terakawa, Hiroo Kenzaki, Shoji Takada p53 Searches on DNA by Rotation-Uncoupled Sliding at C-Terminal Tails and Restricted Hopping of Core Domains p53 Searches on DNA by Rotation-Uncoupled Sliding at C-Terminal Tails and Restricted Hopping of Core Domains p53 Searches on DNA by Rotation-Uncoupled Sliding at C-Terminal Tails and Restricted Hopping of Core Domains JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 134, 35, 14555-14562 JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 134, 35, 14555-14562 JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 134, 35, 14555-14562 2012/09 英語 研究論文(学術雑誌) 公開
Shoji Takada Shoji Takada Shoji Takada Coarse-grained molecular simulations of large biomolecules Coarse-grained molecular simulations of large biomolecules Coarse-grained molecular simulations of large biomolecules CURRENT OPINION IN STRUCTURAL BIOLOGY, 22, 2, 130-137 CURRENT OPINION IN STRUCTURAL BIOLOGY, 22, 2, 130-137 CURRENT OPINION IN STRUCTURAL BIOLOGY, 22, 2, 130-137 2012/04 英語 研究論文(学術雑誌) 公開
Y. Murakami, S. Takada Y. Murakami, S. Takada Y. Murakami, S. Takada Rigor of cell fate decision by variable p53 pulses and roles of cooperative gene expression by p53 Rigor of cell fate decision by variable p53 pulses and roles of cooperative gene expression by p53 Rigor of cell fate decision by variable p53 pulses and roles of cooperative gene expression by p53 Biophysics, 8, 41-50 Biophysics, 8, 41-50 Biophysics, 8, 41-50 2012 英語 公開
Tsuyoshi Terakawa, Shoji Takada Tsuyoshi Terakawa, Shoji Takada Tsuyoshi Terakawa, Shoji Takada Multiscale Ensemble Modeling of Intrinsically Disordered Proteins: p53 N-Terminal Domain Multiscale Ensemble Modeling of Intrinsically Disordered Proteins: p53 N-Terminal Domain Multiscale Ensemble Modeling of Intrinsically Disordered Proteins: p53 N-Terminal Domain BIOPHYSICAL JOURNAL, 101, 6, 1450-1458 BIOPHYSICAL JOURNAL, 101, 6, 1450-1458 BIOPHYSICAL JOURNAL, 101, 6, 1450-1458 2011/09 英語 研究論文(学術雑誌) 公開
Hiroo Kenzaki, Nobuyasu Koga, Naoto Hori, Ryo Kanada, Wenfei Li, Kei-ichi Okazaki, Xin-Qiu Yao, Shoji Takada Hiroo Kenzaki, Nobuyasu Koga, Naoto Hori, Ryo Kanada, Wenfei Li, Kei-ichi Okazaki, Xin-Qiu Yao, Shoji Takada Hiroo Kenzaki, Nobuyasu Koga, Naoto Hori, Ryo Kanada, Wenfei Li, Kei-ichi Okazaki, Xin-Qiu Yao, Shoji Takada CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 7, 6, 1979-1989 JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 7, 6, 1979-1989 JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 7, 6, 1979-1989 2011/06 英語 研究論文(学術雑誌) 公開
Tsuyoshi Terakawa, Tomoshi Kameda, Shoji Takada Tsuyoshi Terakawa, Tomoshi Kameda, Shoji Takada Tsuyoshi Terakawa, Tomoshi Kameda, Shoji Takada On Easy Implementation of a Variant of the Replica Exchange with Solute Tempering in GROMACS On Easy Implementation of a Variant of the Replica Exchange with Solute Tempering in GROMACS On Easy Implementation of a Variant of the Replica Exchange with Solute Tempering in GROMACS JOURNAL OF COMPUTATIONAL CHEMISTRY, 32, 7, 1228-1234 JOURNAL OF COMPUTATIONAL CHEMISTRY, 32, 7, 1228-1234 JOURNAL OF COMPUTATIONAL CHEMISTRY, 32, 7, 1228-1234 2011/05 英語 研究論文(学術雑誌) 公開
Kei-ichi Okazaki, Shoji Takada Kei-ichi Okazaki, Shoji Takada Kei-ichi Okazaki, Shoji Takada Structural Comparison of F-1-ATPase: Interplay among Enzyme Structures, Catalysis, and Rotations Structural Comparison of F-1-ATPase: Interplay among Enzyme Structures, Catalysis, and Rotations Structural Comparison of F-1-ATPase: Interplay among Enzyme Structures, Catalysis, and Rotations STRUCTURE, 19, 4, 588-598 STRUCTURE, 19, 4, 588-598 STRUCTURE, 19, 4, 588-598 2011/04 英語 研究論文(学術雑誌) 公開
Wenfei Li, Peter G. Wolynes, Shoji Takada Wenfei Li, Peter G. Wolynes, Shoji Takada Wenfei Li, Peter G. Wolynes, Shoji Takada Frustration, specific sequence dependence, and nonlinearity in large-amplitude fluctuations of allosteric proteins Frustration, specific sequence dependence, and nonlinearity in large-amplitude fluctuations of allosteric proteins Frustration, specific sequence dependence, and nonlinearity in large-amplitude fluctuations of allosteric proteins PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 108, 9, 3504-3509 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 108, 9, 3504-3509 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 108, 9, 3504-3509 2011/03 英語 研究論文(学術雑誌) 公開
Xin-Qiu Yao, Hiroo Kenzaki, Satoshi Murakami, Shoji Takada Xin-Qiu Yao, Hiroo Kenzaki, Satoshi Murakami, Shoji Takada Xin-Qiu Yao, Hiroo Kenzaki, Satoshi Murakami, Shoji Takada Drug export and allosteric coupling in a multidrug transporter revealed by molecular simulations Drug export and allosteric coupling in a multidrug transporter revealed by molecular simulations Drug export and allosteric coupling in a multidrug transporter revealed by molecular simulations NATURE COMMUNICATIONS, 1 NATURE COMMUNICATIONS, 1 NATURE COMMUNICATIONS, 1 2010/11 英語 研究論文(学術雑誌) 公開
W. Li, S. Takada W. Li, S. Takada Wenfei Li, Shoji Takada Characterizing protein energy landscape by self-learning multiscale simulations: Application to a designed β-hairpin Characterizing protein energy landscape by self-learning multiscale simulations: Application to a designed β-hairpin Characterizing Protein Energy Landscape by Self-Learning Multiscale Simulations: Application to a Designed beta-Hairpin Biophysical Journal, 99, 9, 3029-3037 Biophysical Journal, 99, 9, 3029-3037 BIOPHYSICAL JOURNAL, 99, 9, 3029-3037 2010/11 英語 研究論文(学術雑誌) 公開
Wenfei Li, Hiroaki Yoshii, Naoto Hori, Tomoshi Kameda, Shoji Takada Wenfei Li, Hiroaki Yoshii, Naoto Hori, Tomoshi Kameda, Shoji Takada Wenfei Li, Hiroaki Yoshii, Naoto Hori, Tomoshi Kameda, Shoji Takada Multiscale methods for protein folding simulations Multiscale methods for protein folding simulations Multiscale methods for protein folding simulations METHODS, 52, 1, 106-114 METHODS, 52, 1, 106-114 METHODS, 52, 1, 106-114 2010/09 英語 研究論文(学術雑誌) 公開
Nobuyasu Koga, Tomoshi Kameda, Kei-ichi Okazaki, Shoji Takada Nobuyasu Koga, Tomoshi Kameda, Kei-ichi Okazaki, Shoji Takada Nobuyasu Koga, Tomoshi Kameda, Kei-ichi Okazaki, Shoji Takada Paddling mechanism for the substrate translocation by AAA plus motor revealed by multiscale molecular simulations Paddling mechanism for the substrate translocation by AAA plus motor revealed by multiscale molecular simulations Paddling mechanism for the substrate translocation by AAA plus motor revealed by multiscale molecular simulations PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 106, 43, 18237-18242 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 106, 43, 18237-18242 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 106, 43, 18237-18242 2009/10 英語 研究論文(学術雑誌) 公開
Wenfei Li, Shoji Takada Wenfei Li, Shoji Takada Wenfei Li, Shoji Takada Self-learning multiscale simulation for achieving high accuracy and high efficiency simultaneously Self-learning multiscale simulation for achieving high accuracy and high efficiency simultaneously Self-learning multiscale simulation for achieving high accuracy and high efficiency simultaneously JOURNAL OF CHEMICAL PHYSICS, 130, 21 JOURNAL OF CHEMICAL PHYSICS, 130, 21 JOURNAL OF CHEMICAL PHYSICS, 130, 21 2009/06 英語 研究論文(学術雑誌) 公開
Tatsuya Niwa, Bei-Wen Ying, Katsuyo Saito, WenZhen Jin, Shoji Takada, Takuya Ueda, Hideki Taguchi Tatsuya Niwa, Bei-Wen Ying, Katsuyo Saito, WenZhen Jin, Shoji Takada, Takuya Ueda, Hideki Taguchi Tatsuya Niwa, Bei-Wen Ying, Katsuyo Saito, WenZhen Jin, Shoji Takada, Takuya Ueda, Hideki Taguchi Bimodal protein solubility distribution revealed by an aggregation analysis of the entire ensemble of Escherichia coli proteins Bimodal protein solubility distribution revealed by an aggregation analysis of the entire ensemble of Escherichia coli proteins Bimodal protein solubility distribution revealed by an aggregation analysis of the entire ensemble of Escherichia coli proteins PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 106, 11, 4201-4206 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 106, 11, 4201-4206 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 106, 11, 4201-4206 2009/03 英語 研究論文(学術雑誌) 公開
Naoto Hori, George Chikenji, R. Stephen Berry, Shoji Takada Naoto Hori, George Chikenji, R. Stephen Berry, Shoji Takada Naoto Hori, George Chikenji, R. Stephen Berry, Shoji Takada Folding energy landscape and network dynamics of small globular proteins Folding energy landscape and network dynamics of small globular proteins Folding energy landscape and network dynamics of small globular proteins PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 106, 1, 73-78 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 106, 1, 73-78 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 106, 1, 73-78 2009/01 英語 研究論文(学術雑誌) 公開
Kei-ichi Okazaki, Shoji Takada Kei-ichi Okazaki, Shoji Takada Kei-ichi Okazaki, Shoji Takada Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 105, 32, 11182-11187 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 105, 32, 11182-11187 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 105, 32, 11182-11187 2008/08 英語 研究論文(学術雑誌) 公開
Tadaomi Furuta, Yoshimi Fujitsuka, George Chikenji, Shoji Takada Tadaomi Furuta, Yoshimi Fujitsuka, George Chikenji, Shoji Takada Tadaomi Furuta, Yoshimi Fujitsuka, George Chikenji, Shoji Takada In silico chaperonin-like cycle helps folding of proteins for structure prediction In silico chaperonin-like cycle helps folding of proteins for structure prediction In silico chaperonin-like cycle helps folding of proteins for structure prediction BIOPHYSICAL JOURNAL, 94, 7, 2558-2565 BIOPHYSICAL JOURNAL, 94, 7, 2558-2565 BIOPHYSICAL JOURNAL, 94, 7, 2558-2565 2008/04 英語 研究論文(学術雑誌) 公開
Wenzhen Jin, Shoji Takada Wenzhen Jin, Shoji Takada Wenzhen Jin, Shoji Takada Asymmetry in membrane protein sequence and structure: Glycine outside rule Asymmetry in membrane protein sequence and structure: Glycine outside rule Asymmetry in membrane protein sequence and structure: Glycine outside rule JOURNAL OF MOLECULAR BIOLOGY, 377, 1, 74-82 JOURNAL OF MOLECULAR BIOLOGY, 377, 1, 74-82 JOURNAL OF MOLECULAR BIOLOGY, 377, 1, 74-82 2008/03 英語 研究論文(学術雑誌) 公開
Chikenji George, Fujitsuka Yoshimi, Takada Shoji Chikenji George, Fujitsuka Yoshimi, Takada Shoji Chikenji George, Fujitsuka Yoshimi, Takada Shoji What we can learn about protein folding from recent progress in structure prediction What we can learn about protein folding from recent progress in structure prediction What we can learn about protein folding from recent progress in structure prediction FRONTIERS OF COMPUTATIONAL SCIENCE, 149-+ FRONTIERS OF COMPUTATIONAL SCIENCE, 149-+ FRONTIERS OF COMPUTATIONAL SCIENCE, 149-+ 2007 公開
Tomoshi Kameda, Shoji Takada Tomoshi Kameda, Shoji Takada Tomoshi Kameda, Shoji Takada Secondary structure provides a template for the folding of nearby polypeptides Secondary structure provides a template for the folding of nearby polypeptides Secondary structure provides a template for the folding of nearby polypeptides PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 103, 47, 17765-17770 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 103, 47, 17765-17770 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 103, 47, 17765-17770 2006/11 英語 研究論文(学術雑誌) 公開
Kei-ichi Okazaki, Nobuyasu Koga, Shoji Takada, Jose N. Onuchic, Peter G. Wolynes Kei-ichi Okazaki, Nobuyasu Koga, Shoji Takada, Jose N. Onuchic, Peter G. Wolynes Kei-ichi Okazaki, Nobuyasu Koga, Shoji Takada, Jose N. Onuchic, Peter G. Wolynes Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 103, 32, 11844-11849 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 103, 32, 11844-11849 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 103, 32, 11844-11849 2006/08 英語 研究論文(学術雑誌) 公開
C Kobayashi, S Takada C Kobayashi, S Takada C Kobayashi, S Takada Protein grabs a ligand by extending anchor residues: Molecular simulation for Ca2+ binding to calmodulin loop Protein grabs a ligand by extending anchor residues: Molecular simulation for Ca2+ binding to calmodulin loop Protein grabs a ligand by extending anchor residues: Molecular simulation for Ca2+ binding to calmodulin loop BIOPHYSICAL JOURNAL, 90, 9, 3043-3051 BIOPHYSICAL JOURNAL, 90, 9, 3043-3051 BIOPHYSICAL JOURNAL, 90, 9, 3043-3051 2006/05 英語 研究論文(学術雑誌) 公開
N Koga, S Takada N Koga, S Takada N Koga, S Takada Folding-based molecular simulations reveal mechanisms of the rotary motor F-1-ATPase Folding-based molecular simulations reveal mechanisms of the rotary motor F-1-ATPase Folding-based molecular simulations reveal mechanisms of the rotary motor F-1-ATPase PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 103, 14, 5367-5372 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 103, 14, 5367-5372 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 103, 14, 5367-5372 2006/04 英語 研究論文(学術雑誌) 公開
G Chikenji, Y Fujitsuka, S Takada G Chikenji, Y Fujitsuka, S Takada G Chikenji, Y Fujitsuka, S Takada Shaping up the protein folding funnel by local interaction: Lesson from a structure prediction study Shaping up the protein folding funnel by local interaction: Lesson from a structure prediction study Shaping up the protein folding funnel by local interaction: Lesson from a structure prediction study PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 103, 9, 3141-3146 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 103, 9, 3141-3146 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 103, 9, 3141-3146 2006/02 英語 研究論文(学術雑誌) 公開
Y Fujitsuka, G Chikenji, S Takada Y Fujitsuka, G Chikenji, S Takada Y Fujitsuka, G Chikenji, S Takada SimFold energy function for de novo protein structure prediction: Consensus with Rosetta SimFold energy function for de novo protein structure prediction: Consensus with Rosetta SimFold energy function for de novo protein structure prediction: Consensus with Rosetta PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 62, 2, 381-398 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 62, 2, 381-398 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 62, 2, 381-398 2006/02 英語 研究論文(学術雑誌) 公開
蟻川浩, 増田慎吾, 古田忠臣, 金文珍, 朴聖俊, 高田彰二, 藤川和利, 砂原秀樹 蟻川浩, 増田慎吾, 古田忠臣, 金文珍, 朴聖俊, 高田彰二, 藤川和利, 砂原秀樹 Hiroshi Arikawa, Shingo Masuda, Tadaomi Furuta, Wenzhen Jin, Sung-Joon Park, Shoji Takada, Kazutoshi Fujikawa, Hideki Sunahara 対話的動作を考慮したタンパク質立体構造予測システム 対話的動作を考慮したタンパク質立体構造予測システム A computing system for protein structure prediction with trial-and-error process 情報処理学会論文誌:コンピューティングシステム, 46, SIG12(ACS11), 407-419 情報処理学会論文誌:コンピューティングシステム, 46, SIG12(ACS11), 407-419 IPSJ Transactions on Advanced Computing Systems, 46, SIG12(ACS11), 407-419 2005/08 日本語 研究論文(学術雑誌) 公開
Kazutoshi Fujikawa, Wenzhen Jin, Sung-Joon Park, Tadaomi Furuta, Shoji Takada, Hiroshi Arikawa, Susumu Date, Shinji Shimojo Kazutoshi Fujikawa, Wenzhen Jin, Sung-Joon Park, Tadaomi Furuta, Shoji Takada, Hiroshi Arikawa, Susumu Date, Shinji Shimojo Kazutoshi Fujikawa, Wenzhen Jin, Sung-Joon Park, Tadaomi Furuta, Shoji Takada, Hiroshi Arikawa, Susumu Date, Shinji Shimojo Applying a Grid Technology to Protein Structure Predictor "ROKKY" Applying a Grid Technology to Protein Structure Predictor "ROKKY" Applying a Grid Technology to Protein Structure Predictor "ROKKY" FROM GRID TO HEALTHGRID, 112, 27-36 FROM GRID TO HEALTHGRID, 112, 27-36 FROM GRID TO HEALTHGRID, 112, 27-36 2005 英語 研究論文(国際会議プロシーディングス) 公開
G Chikenji, Y Fujitsuka, S Takada G Chikenji, Y Fujitsuka, S Takada G Chikenji, Y Fujitsuka, S Takada Protein folding mechanisms and energy landscape of src SH3 domain studied by a structure prediction toolbox Protein folding mechanisms and energy landscape of src SH3 domain studied by a structure prediction toolbox Protein folding mechanisms and energy landscape of src SH3 domain studied by a structure prediction toolbox CHEMICAL PHYSICS, 307, 2-3, 157-162 CHEMICAL PHYSICS, 307, 2-3, 157-162 CHEMICAL PHYSICS, 307, 2-3, 157-162 2004/12 英語 研究論文(学術雑誌) 公開
YJ Zhu, XR Fu, T Wang, A Tamura, S Takada, JG Savan, F Gai YJ Zhu, XR Fu, T Wang, A Tamura, S Takada, JG Savan, F Gai YJ Zhu, XR Fu, T Wang, A Tamura, S Takada, JG Savan, F Gai Guiding the search for a protein's maximum rate of folding Guiding the search for a protein's maximum rate of folding Guiding the search for a protein's maximum rate of folding CHEMICAL PHYSICS, 307, 2-3, 99-109 CHEMICAL PHYSICS, 307, 2-3, 99-109 CHEMICAL PHYSICS, 307, 2-3, 99-109 2004/12 英語 研究論文(学術雑誌) 公開
S.Y. Lee, Y. Fujitsuka, D.H. Kim, S. Takada S.Y. Lee, Y. Fujitsuka, D.H. Kim, S. Takada SY Lee, Y Fujitsuka, DH Kim, S Takada Roles of Physical Interactions in Determining Protein-Folding Mechanisms: Molecular Simulation of Protein G and α Spectrin SH3 Roles of Physical Interactions in Determining Protein-Folding Mechanisms: Molecular Simulation of Protein G and α Spectrin SH3 Roles of physical interactions in determining protein folding mechanisms: Molecular simulation of protein G and alpha spectrin SH3 Proteins: Structure, Function and Genetics, 55, 1, 128-138 Proteins: Structure, Function and Genetics, 55, 1, 128-138 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 55, 1, 128-138 2004/04 英語 研究論文(学術雑誌) 公開
Y Fujitsuka, S Takada, ZA Luthey-Schulten, PG Wolynes Y Fujitsuka, S Takada, ZA Luthey-Schulten, PG Wolynes Y Fujitsuka, S Takada, ZA Luthey-Schulten, PG Wolynes Optimizing physical energy functions for protein folding Optimizing physical energy functions for protein folding Optimizing physical energy functions for protein folding PROTEINS-STRUCTURE FUNCTION AND GENETICS, 54, 1, 88-103 PROTEINS-STRUCTURE FUNCTION AND GENETICS, 54, 1, 88-103 PROTEINS-STRUCTURE FUNCTION AND GENETICS, 54, 1, 88-103 2004/01 英語 研究論文(学術雑誌) 公開
AR Kinjo, S Takada AR Kinjo, S Takada AR Kinjo, S Takada Competition between protein folding and aggregation with molecular chaperones in crowded solutions: Insight from mesoscopic simulations Competition between protein folding and aggregation with molecular chaperones in crowded solutions: Insight from mesoscopic simulations Competition between protein folding and aggregation with molecular chaperones in crowded solutions: Insight from mesoscopic simulations BIOPHYSICAL JOURNAL, 85, 6, 3521-3531 BIOPHYSICAL JOURNAL, 85, 6, 3521-3531 BIOPHYSICAL JOURNAL, 85, 6, 3521-3531 2003/12 英語 研究論文(学術雑誌) 公開
G Chikenji, Y Fujitsuka, S Takada G Chikenji, Y Fujitsuka, S Takada G Chikenji, Y Fujitsuka, S Takada A reversible fragment assembly method for de novo protein structure prediction A reversible fragment assembly method for de novo protein structure prediction A reversible fragment assembly method for de novo protein structure prediction JOURNAL OF CHEMICAL PHYSICS, 119, 13, 6895-6903 JOURNAL OF CHEMICAL PHYSICS, 119, 13, 6895-6903 JOURNAL OF CHEMICAL PHYSICS, 119, 13, 6895-6903 2003/10 英語 研究論文(学術雑誌) 公開
F Takagi, N Koga, S Takada F Takagi, N Koga, S Takada F Takagi, N Koga, S Takada How protein thermodynamics and folding mechanisms are altered by the chaperonin cage: Molecular simulations How protein thermodynamics and folding mechanisms are altered by the chaperonin cage: Molecular simulations How protein thermodynamics and folding mechanisms are altered by the chaperonin cage: Molecular simulations PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 100, 20, 11367-11372 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 100, 20, 11367-11372 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 100, 20, 11367-11372 2003/09 英語 研究論文(学術雑誌) 公開
WZ Jin, O Kambara, H Sasakawa, A Tamura, S Takada WZ Jin, O Kambara, H Sasakawa, A Tamura, S Takada WZ Jin, O Kambara, H Sasakawa, A Tamura, S Takada De novo design of foldable proteins with smooth folding funnel: Automated negative design and experimental verification De novo design of foldable proteins with smooth folding funnel: Automated negative design and experimental verification De novo design of foldable proteins with smooth folding funnel: Automated negative design and experimental verification STRUCTURE, 11, 5, 581-590 STRUCTURE, 11, 5, 581-590 STRUCTURE, 11, 5, 581-590 2003/05 英語 研究論文(学術雑誌) 公開
AR Kinjo, S Takada AR Kinjo, S Takada AR Kinjo, S Takada Effects of macromolecular crowding on protein folding and aggregation studied by density functional theory: Dynamics Effects of macromolecular crowding on protein folding and aggregation studied by density functional theory: Dynamics Effects of macromolecular crowding on protein folding and aggregation studied by density functional theory: Dynamics PHYSICAL REVIEW E, 66, 5, 051902/1-051902/10 PHYSICAL REVIEW E, 66, 5, 051902/1-051902/10 PHYSICAL REVIEW E, 66, 5, 051902/1-051902/10 2002/11 英語 研究論文(学術雑誌) 公開
AR Kinjo, S Takada AR Kinjo, S Takada AR Kinjo, S Takada Effects of macromolecular crowding on protein folding and aggregation studied by density functional theory: Statics Effects of macromolecular crowding on protein folding and aggregation studied by density functional theory: Statics Effects of macromolecular crowding on protein folding and aggregation studied by density functional theory: Statics PHYSICAL REVIEW E, 66, 3, 031911/1-031911/9 PHYSICAL REVIEW E, 66, 3, 031911/1-031911/9 PHYSICAL REVIEW E, 66, 3, 031911/1-031911/9 2002/09 英語 研究論文(学術雑誌) 公開
H Fukunishi, O Watanabe, S Takada H Fukunishi, O Watanabe, S Takada H Fukunishi, O Watanabe, S Takada On the Hamiltonian replica exchange method for efficient sampling of biomolecular systems: Application to protein structure prediction On the Hamiltonian replica exchange method for efficient sampling of biomolecular systems: Application to protein structure prediction On the Hamiltonian replica exchange method for efficient sampling of biomolecular systems: Application to protein structure prediction JOURNAL OF CHEMICAL PHYSICS, 116, 20, 9058-9067 JOURNAL OF CHEMICAL PHYSICS, 116, 20, 9058-9067 JOURNAL OF CHEMICAL PHYSICS, 116, 20, 9058-9067 2002/05 英語 研究論文(学術雑誌) 公開
N. Koga, S. Takada N. Koga, S. Takada N Koga, S Takada Roles of native topology and chain-length scaling in protein folding: A simulation study with a ḡ-like model Roles of native topology and chain-length scaling in protein folding: A simulation study with a ḡ-like model Roles of native topology and chain-length scaling in protein folding: A simulation study with a Go-like model Journal of Molecular Biology, 313, 1, 171-180 Journal of Molecular Biology, 313, 1, 171-180 JOURNAL OF MOLECULAR BIOLOGY, 313, 1, 171-180 2001/10 英語 研究論文(学術雑誌) 公開
JJ Portman, S Takada, PG Wolynes JJ Portman, S Takada, PG Wolynes JJ Portman, S Takada, PG Wolynes Microscopic theory of protein folding rates. II. Local reaction coordinates and chain dynamics Microscopic theory of protein folding rates. II. Local reaction coordinates and chain dynamics Microscopic theory of protein folding rates. II. Local reaction coordinates and chain dynamics JOURNAL OF CHEMICAL PHYSICS, 114, 11, 5082-5096 JOURNAL OF CHEMICAL PHYSICS, 114, 11, 5082-5096 JOURNAL OF CHEMICAL PHYSICS, 114, 11, 5082-5096 2001/03 英語 公開
JJ Portman, S Takada, PG Wolynes JJ Portman, S Takada, PG Wolynes JJ Portman, S Takada, PG Wolynes Microscopic theory of protein folding rates. I. Fine structure of the free energy profile and folding routes from a variational approach Microscopic theory of protein folding rates. I. Fine structure of the free energy profile and folding routes from a variational approach Microscopic theory of protein folding rates. I. Fine structure of the free energy profile and folding routes from a variational approach JOURNAL OF CHEMICAL PHYSICS, 114, 11, 5069-5081 JOURNAL OF CHEMICAL PHYSICS, 114, 11, 5069-5081 JOURNAL OF CHEMICAL PHYSICS, 114, 11, 5069-5081 2001/03 英語 研究論文(学術雑誌) 公開
S Takada S Takada S Takada Protein folding simulation with solvent-induced force field: Folding pathway ensemble of three-helix-bundle proteins Protein folding simulation with solvent-induced force field: Folding pathway ensemble of three-helix-bundle proteins Protein folding simulation with solvent-induced force field: Folding pathway ensemble of three-helix-bundle proteins PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 42, 1, 85-98 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 42, 1, 85-98 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 42, 1, 85-98 2001/01 英語 研究論文(学術雑誌) 公開
S Takada S Takada S Takada Simulating folding of helical proteins with coarse grained models Simulating folding of helical proteins with coarse grained models Simulating folding of helical proteins with coarse grained models PROGRESS OF THEORETICAL PHYSICS SUPPLEMENT, 138, 366-371 PROGRESS OF THEORETICAL PHYSICS SUPPLEMENT, 138, 366-371 PROGRESS OF THEORETICAL PHYSICS SUPPLEMENT, 138, 366-371 2000 英語 研究論文(学術雑誌) 公開
S Takada S Takada S Takada G(o)over-bar-ing for the prediction of protein folding mechanisms G(o)over-bar-ing for the prediction of protein folding mechanisms G(o)over-bar-ing for the prediction of protein folding mechanisms PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 96, 21, 11698-11700 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 96, 21, 11698-11700 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 96, 21, 11698-11700 1999/10 英語 公開
S Takada, Z Luthey-Schulten, PG Wolynes S Takada, Z Luthey-Schulten, PG Wolynes S Takada, Z Luthey-Schulten, PG Wolynes Folding dynamics with nonadditive forces: A simulation study of a designed helical protein and a random heteropolymer Folding dynamics with nonadditive forces: A simulation study of a designed helical protein and a random heteropolymer Folding dynamics with nonadditive forces: A simulation study of a designed helical protein and a random heteropolymer JOURNAL OF CHEMICAL PHYSICS, 110, 23, 11616-11629 JOURNAL OF CHEMICAL PHYSICS, 110, 23, 11616-11629 JOURNAL OF CHEMICAL PHYSICS, 110, 23, 11616-11629 1999/06 英語 研究論文(学術雑誌) 公開
JJ Portman, S Takada, PG Wolynes JJ Portman, S Takada, PG Wolynes JJ Portman, S Takada, PG Wolynes Variational theory for site resolved protein folding free energy surfaces Variational theory for site resolved protein folding free energy surfaces Variational theory for site resolved protein folding free energy surfaces PHYSICAL REVIEW LETTERS, 81, 23, 5237-5240 PHYSICAL REVIEW LETTERS, 81, 23, 5237-5240 PHYSICAL REVIEW LETTERS, 81, 23, 5237-5240 1998/12 英語 研究論文(学術雑誌) 公開
S Takada, PG Wolynes S Takada, PG Wolynes S Takada, PG Wolynes Microscopic theory of critical folding nuclei and reconfiguration activation barriers in folding proteins Microscopic theory of critical folding nuclei and reconfiguration activation barriers in folding proteins Microscopic theory of critical folding nuclei and reconfiguration activation barriers in folding proteins JOURNAL OF CHEMICAL PHYSICS, 107, 22, 9585-9598 JOURNAL OF CHEMICAL PHYSICS, 107, 22, 9585-9598 JOURNAL OF CHEMICAL PHYSICS, 107, 22, 9585-9598 1997/12 英語 研究論文(学術雑誌) 公開
S Takada, PG Wolynes S Takada, PG Wolynes S Takada, PG Wolynes Statics, metastable states, and barriers in protein folding: A replica variational approach Statics, metastable states, and barriers in protein folding: A replica variational approach Statics, metastable states, and barriers in protein folding: A replica variational approach PHYSICAL REVIEW E, 55, 4, 4562-4577 PHYSICAL REVIEW E, 55, 4, 4562-4577 PHYSICAL REVIEW E, 55, 4, 4562-4577 1997/04 英語 研究論文(学術雑誌) 公開
S Takada, PG Wolynes S Takada, PG Wolynes S Takada, PG Wolynes Glassy dynamics of random heteropolymers Glassy dynamics of random heteropolymers Glassy dynamics of random heteropolymers PROGRESS OF THEORETICAL PHYSICS SUPPLEMENT, 126, 49-52 PROGRESS OF THEORETICAL PHYSICS SUPPLEMENT, 126, 49-52 PROGRESS OF THEORETICAL PHYSICS SUPPLEMENT, 126, 49-52 1997 英語 研究論文(学術雑誌) 公開
S Takada S Takada S Takada Multidimensional tunneling in terms of complex classical mechanics: Wave functions, energy splittings, and decay rates in nonintegrable systems Multidimensional tunneling in terms of complex classical mechanics: Wave functions, energy splittings, and decay rates in nonintegrable systems Multidimensional tunneling in terms of complex classical mechanics: Wave functions, energy splittings, and decay rates in nonintegrable systems JOURNAL OF CHEMICAL PHYSICS, 104, 10, 3742-3759 JOURNAL OF CHEMICAL PHYSICS, 104, 10, 3742-3759 JOURNAL OF CHEMICAL PHYSICS, 104, 10, 3742-3759 1996/03 英語 研究論文(学術雑誌) 公開
S TAKADA, PN WALKER, M WILKINSON S TAKADA, PN WALKER, M WILKINSON S TAKADA, PN WALKER, M WILKINSON TRANSFER-MATRIX APPROACH TO TUNNELING BETWEEN KOLMOGOROV-ARNOLD-MOSER TORI TRANSFER-MATRIX APPROACH TO TUNNELING BETWEEN KOLMOGOROV-ARNOLD-MOSER TORI TRANSFER-MATRIX APPROACH TO TUNNELING BETWEEN KOLMOGOROV-ARNOLD-MOSER TORI PHYSICAL REVIEW A, 52, 5, 3546-3553 PHYSICAL REVIEW A, 52, 5, 3546-3553 PHYSICAL REVIEW A, 52, 5, 3546-3553 1995/11 英語 研究論文(学術雑誌) 公開
S TAKADA, H NAKAMURA S TAKADA, H NAKAMURA S TAKADA, H NAKAMURA EFFECTS OF VIBRATIONAL-EXCITATION ON MULTIDIMENSIONAL TUNNELING - GENERAL STUDY AND PROTON TUNNELING IN TROPOLONE EFFECTS OF VIBRATIONAL-EXCITATION ON MULTIDIMENSIONAL TUNNELING - GENERAL STUDY AND PROTON TUNNELING IN TROPOLONE EFFECTS OF VIBRATIONAL-EXCITATION ON MULTIDIMENSIONAL TUNNELING - GENERAL STUDY AND PROTON TUNNELING IN TROPOLONE JOURNAL OF CHEMICAL PHYSICS, 102, 10, 3977-3992 JOURNAL OF CHEMICAL PHYSICS, 102, 10, 3977-3992 JOURNAL OF CHEMICAL PHYSICS, 102, 10, 3977-3992 1995/03 英語 研究論文(学術雑誌) 公開
K MORIBAYASHI, S TAKADA, H NAKAMURA K MORIBAYASHI, S TAKADA, H NAKAMURA K MORIBAYASHI, S TAKADA, H NAKAMURA CONSTANT CENTRIFUGAL POTENTIAL APPROXIMATION FOR ATOM-DIATOM CHEMICAL-REACTION DYNAMICS CONSTANT CENTRIFUGAL POTENTIAL APPROXIMATION FOR ATOM-DIATOM CHEMICAL-REACTION DYNAMICS CONSTANT CENTRIFUGAL POTENTIAL APPROXIMATION FOR ATOM-DIATOM CHEMICAL-REACTION DYNAMICS JOURNAL OF CHEMICAL PHYSICS, 100, 6, 4284-4293 JOURNAL OF CHEMICAL PHYSICS, 100, 6, 4284-4293 JOURNAL OF CHEMICAL PHYSICS, 100, 6, 4284-4293 1994/03 英語 研究論文(学術雑誌) 公開
S TAKADA, H NAKAMURA S TAKADA, H NAKAMURA S TAKADA, H NAKAMURA WENTZEL-KRAMERS-BRILLOUIN THEORY OF MULTIDIMENSIONAL TUNNELING - GENERAL-THEORY FOR ENERGY SPLITTING WENTZEL-KRAMERS-BRILLOUIN THEORY OF MULTIDIMENSIONAL TUNNELING - GENERAL-THEORY FOR ENERGY SPLITTING WENTZEL-KRAMERS-BRILLOUIN THEORY OF MULTIDIMENSIONAL TUNNELING - GENERAL-THEORY FOR ENERGY SPLITTING JOURNAL OF CHEMICAL PHYSICS, 100, 1, 98-113 JOURNAL OF CHEMICAL PHYSICS, 100, 1, 98-113 JOURNAL OF CHEMICAL PHYSICS, 100, 1, 98-113 1994/01 英語 研究論文(学術雑誌) 公開
S. Takada, A. Ohsaki, H. Nakamura S. Takada, A. Ohsaki, H. Nakamura S TAKADA, A OHSAKI, H NAKAMURA Reaction dynamics of D+H<sub>2</sub> → DH+H: Effects of potential energy surface topography and usefulness of the constant centrifugal potential approximation Reaction dynamics of D+H<sub>2</sub> → DH+H: Effects of potential energy surface topography and usefulness of the constant centrifugal potential approximation REACTION DYNAMICS OF D + H2-]DH + H - EFFECTS OF POTENTIAL-ENERGY SURFACE-TOPOGRAPHY AND USEFULNESS OF THE CONSTANT CENTRIFUGAL POTENTIAL APPROXIMATION The Journal of Chemical Physics, 96, 1, 339-348 The Journal of Chemical Physics, 96, 1, 339-348 JOURNAL OF CHEMICAL PHYSICS, 96, 1, 339-348 1992/01 英語 研究論文(学術雑誌) 公開

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著者 著者(日本語) 著者(英語) タイトル タイトル(日本語) タイトル(英語) 書誌情報等 書誌情報等(日本語) 書誌情報等(英語) 出版年月 査読の有無 記述言語 掲載種別 公開
Masahiro Shimizu, Yasunori Noguchi, Yukari Sakiyama, Hironori Kawakami, Tsutomu Katayama, Shoji Takada Masahiro Shimizu, Yasunori Noguchi, Yukari Sakiyama, Hironori Kawakami, Tsutomu Katayama, Shoji Takada Masahiro Shimizu, Yasunori Noguchi, Yukari Sakiyama, Hironori Kawakami, Tsutomu Katayama, Shoji Takada Near-Atomic Structural Model for Bacterial DNA Replication Initiation Complex and its Functional Insights Near-Atomic Structural Model for Bacterial DNA Replication Initiation Complex and its Functional Insights Near-Atomic Structural Model for Bacterial DNA Replication Initiation Complex and its Functional Insights BIOPHYSICAL JOURNAL, 112, 3, 512A-512A BIOPHYSICAL JOURNAL, 112, 3, 512A-512A BIOPHYSICAL JOURNAL, 112, 3, 512A-512A 2017/02 英語 研究発表要旨(国際会議) 公開
Le Chang, Shoji Takada Le Chang, Shoji Takada Le Chang, Shoji Takada Structural Dynamics of Tri-Nuleosome by Coarse-Grained Simulations: Effects of Histone Tail Acetylation Structural Dynamics of Tri-Nuleosome by Coarse-Grained Simulations: Effects of Histone Tail Acetylation Structural Dynamics of Tri-Nuleosome by Coarse-Grained Simulations: Effects of Histone Tail Acetylation BIOPHYSICAL JOURNAL, 110, 3, 69A-69A BIOPHYSICAL JOURNAL, 110, 3, 69A-69A BIOPHYSICAL JOURNAL, 110, 3, 69A-69A 2016/02 英語 研究発表要旨(国際会議) 公開
Mashiho Ito, Shoji Takada Mashiho Ito, Shoji Takada Mashiho Ito, Shoji Takada Transition Path Times in Protein Folding Studied by Structure-Based Simulation Transition Path Times in Protein Folding Studied by Structure-Based Simulation Transition Path Times in Protein Folding Studied by Structure-Based Simulation BIOPHYSICAL JOURNAL, 108, 2, 50A-50A BIOPHYSICAL JOURNAL, 108, 2, 50A-50A BIOPHYSICAL JOURNAL, 108, 2, 50A-50A 2015/01 英語 研究発表要旨(国際会議) 公開
Tsuyoshi Terakawa, Junichi Higo, Shoji Takada Tsuyoshi Terakawa, Junichi Higo, Shoji Takada Tsuyoshi Terakawa, Junichi Higo, Shoji Takada Specific DNA Sequence Search Dynamics of p53 and Effect of Acetylation of its C-Terminal Domain: Multi-Scale Simulation Study Specific DNA Sequence Search Dynamics of p53 and Effect of Acetylation of its C-Terminal Domain: Multi-Scale Simulation Study Specific DNA Sequence Search Dynamics of p53 and Effect of Acetylation of its C-Terminal Domain: Multi-Scale Simulation Study BIOPHYSICAL JOURNAL, 106, 2, 498A-498A BIOPHYSICAL JOURNAL, 106, 2, 498A-498A BIOPHYSICAL JOURNAL, 106, 2, 498A-498A 2014/01 英語 研究発表要旨(国際会議) 公開
Wenfei Li, Tsuyoshi Terakawa, Wei Wang, Shoji Takada Wenfei Li, Tsuyoshi Terakawa, Wei Wang, Shoji Takada Wenfei Li, Tsuyoshi Terakawa, Wei Wang, Shoji Takada Energy landscape and multiroute folding of topologically complex proteins adenylate kinase and 2out-knot (vol 109, pg 17789, 2012) Energy landscape and multiroute folding of topologically complex proteins adenylate kinase and 2out-knot (vol 109, pg 17789, 2012) Energy landscape and multiroute folding of topologically complex proteins adenylate kinase and 2out-knot (vol 109, pg 17789, 2012) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109, 45, 18625-18625 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109, 45, 18625-18625 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109, 45, 18625-18625 2012/11 英語 その他記事 公開
Ono Koji, Hori Naoto, Takada Shoji Ono Koji, Hori Naoto, Takada Shoji Ono Koji, Hori Naoto, Takada Shoji 1PT172 粗視化シミュレーションによるサテライトタバコモザイクウィルスの安定性とダイナミクス(日本生物物理学会第50回年会(2012年度)) 1PT172 粗視化シミュレーションによるサテライトタバコモザイクウィルスの安定性とダイナミクス(日本生物物理学会第50回年会(2012年度)) 1PT172 Stability and dynamics of satellite tobacco mosaic viruses studied by coarse-grained simulations(The 50th Annual Meeting of the Biophysical Society of Japan) 生物物理, 52, 1 生物物理, 52, 1 Biophysics, 52, 1 2012/08/15 英語 公開
Naoto Hori, Shoji Takada Naoto Hori, Shoji Takada Naoto Hori, Shoji Takada A Coarse-Grained Simulation Study of Ribosome and tRNA Dynamics during Translocation A Coarse-Grained Simulation Study of Ribosome and tRNA Dynamics during Translocation A Coarse-Grained Simulation Study of Ribosome and tRNA Dynamics during Translocation BIOPHYSICAL JOURNAL, 102, 3, 69A-69A BIOPHYSICAL JOURNAL, 102, 3, 69A-69A BIOPHYSICAL JOURNAL, 102, 3, 69A-69A 2012/01 英語 研究発表要旨(国際会議) 公開
Fuyuki Sakai, Shoji Takada Fuyuki Sakai, Shoji Takada Fuyuki Sakai, Shoji Takada The Retinal Conformation of Metarhodopsin II Elucidated by Molecular Dynamics Simulations The Retinal Conformation of Metarhodopsin II Elucidated by Molecular Dynamics Simulations The Retinal Conformation of Metarhodopsin II Elucidated by Molecular Dynamics Simulations BIOPHYSICAL JOURNAL, 102, 3, 168A-168A BIOPHYSICAL JOURNAL, 102, 3, 168A-168A BIOPHYSICAL JOURNAL, 102, 3, 168A-168A 2012/01 英語 研究発表要旨(国際会議) 公開
Tsukasa Makino, Teppei Mori, Ryo Kanada, Ken-ichi Miyazono, Shoji Takada, Masaru Tanokura, Michio Tomishige Tsukasa Makino, Teppei Mori, Ryo Kanada, Ken-ichi Miyazono, Shoji Takada, Masaru Tanokura, Michio Tomishige Tsukasa Makino, Teppei Mori, Ryo Kanada, Ken-ichi Miyazono, Shoji Takada, Masaru Tanokura, Michio Tomishige Structural Basis for the Coordinated Processive Movement of Kinesin-1 studied by Structural and Single Molecule Analyses Structural Basis for the Coordinated Processive Movement of Kinesin-1 studied by Structural and Single Molecule Analyses Structural Basis for the Coordinated Processive Movement of Kinesin-1 studied by Structural and Single Molecule Analyses BIOPHYSICAL JOURNAL, 100, 3, 120-121 BIOPHYSICAL JOURNAL, 100, 3, 120-121 BIOPHYSICAL JOURNAL, 100, 3, 120-121 2011/02 英語 研究発表要旨(国際会議) 公開
Hiroo Kenzaki, Nobuyasu Koga, Shinji Fujiwara, Naoto Hori, Ryo Kanada, Kei-ichi Okazaki, Xin-Qiu Yao, Wenfei Li, Shoji Takada Hiroo Kenzaki, Nobuyasu Koga, Shinji Fujiwara, Naoto Hori, Ryo Kanada, Kei-ichi Okazaki, Xin-Qiu Yao, Wenfei Li, Shoji Takada Hiroo Kenzaki, Nobuyasu Koga, Shinji Fujiwara, Naoto Hori, Ryo Kanada, Kei-ichi Okazaki, Xin-Qiu Yao, Wenfei Li, Shoji Takada Biomolecular Coarse-Grained Simulation Program CafeMol Biomolecular Coarse-Grained Simulation Program CafeMol Biomolecular Coarse-Grained Simulation Program CafeMol BIOPHYSICAL JOURNAL, 98, 3, 574A-574A BIOPHYSICAL JOURNAL, 98, 3, 574A-574A BIOPHYSICAL JOURNAL, 98, 3, 574A-574A 2010/01 英語 研究発表要旨(国際会議) 公開
Xin-Qiu Yao, Hiroo Kenzaki, Shoji Takada Xin-Qiu Yao, Hiroo Kenzaki, Shoji Takada Xin-Qiu Yao, Hiroo Kenzaki, Shoji Takada Functionally Rotating Mechanism of a Multidrug Transporter Studied by Coarse-Grained Simulation Functionally Rotating Mechanism of a Multidrug Transporter Studied by Coarse-Grained Simulation Functionally Rotating Mechanism of a Multidrug Transporter Studied by Coarse-Grained Simulation BIOPHYSICAL JOURNAL, 98, 3, 685A-685A BIOPHYSICAL JOURNAL, 98, 3, 685A-685A BIOPHYSICAL JOURNAL, 98, 3, 685A-685A 2010/01 英語 研究発表要旨(国際会議) 公開
Ryo Kanada, Takeshi Kuwata, Hiroo Kenzaki, Shoji Takada Ryo Kanada, Takeshi Kuwata, Hiroo Kenzaki, Shoji Takada Ryo Kanada, Takeshi Kuwata, Hiroo Kenzaki, Shoji Takada Mechanism of Unidirectional Move of KIF1A Motor Studied by Coarse-Grained Simulations Mechanism of Unidirectional Move of KIF1A Motor Studied by Coarse-Grained Simulations Mechanism of Unidirectional Move of KIF1A Motor Studied by Coarse-Grained Simulations BIOPHYSICAL JOURNAL, 98, 3, 167A-167A BIOPHYSICAL JOURNAL, 98, 3, 167A-167A BIOPHYSICAL JOURNAL, 98, 3, 167A-167A 2010/01 英語 研究発表要旨(国際会議) 公開
Yoshii Hiroaki, Hori Naoto, Kameda Tomoshi, Takada Shoji Yoshii Hiroaki, Hori Naoto, Kameda Tomoshi, Takada Shoji Yoshii Hiroaki, Hori Naoto, Kameda Tomoshi, Takada Shoji 3P-023 全原子モデルによる小球状タンパク質のフォールディングエネルギー地形 : マルチスケールモデリング(蛋白質・物性(3),第46回日本生物物理学会年会) 3P-023 全原子モデルによる小球状タンパク質のフォールディングエネルギー地形 : マルチスケールモデリング(蛋白質・物性(3),第46回日本生物物理学会年会) 3P-023 Folding energy landscape of small globular proteins at atomistic resolution revealed by multiscale modeling(The 46th Annual Meeting of the Biophysical Society of Japan) 生物物理, 48, 1 生物物理, 48, 1 Biophysics, 48, 1 2008/10/25 英語 公開
Shoji Takada Shoji Takada Shoji Takada COMP 222-Protein folding network, and energy landscape, studied by parallel Wang-Landau sampling COMP 222-Protein folding network, and energy landscape, studied by parallel Wang-Landau sampling COMP 222-Protein folding network, and energy landscape, studied by parallel Wang-Landau sampling ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 235 ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 235 ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 235 2008/04 英語 研究発表要旨(国際会議) 公開
朴 聖俊, 千見寺 浄慈, 広川 貴次, 富井 健太郎, 高田 彰二, Sung Joon Park, George Chikenji, Takatsugu Hirokawa, Kentaro Tomii, Shoji Takada 朴 聖俊, 千見寺 浄慈, 広川 貴次, 富井 健太郎, 高田 彰二, Sung Joon Park, George Chikenji, Takatsugu Hirokawa, Kentaro Tomii, Shoji Takada PARK Sung-Joon, CHIKENJI George, HIROKAWA Takatsugu, TOMII Kentaro, TAKADA Shoji, Sung Joon Park, George Chikenji, Takatsugu Hirokawa, Kentaro Tomii, Shoji Takada タンパク質立体構造予測の現状と未来 タンパク質立体構造予測の現状と未来 Present and Future Prospects of Protein Structure Prediction 人工知能学会誌 = Journal of Japanese Society for Artificial Intelligence, 20, 4, 479-485 人工知能学会誌 = Journal of Japanese Society for Artificial Intelligence, 20, 4, 479-485 Journal of Japanese Society for Artificial Intelligence, 20, 4, 479-485 2005/07/01 日本語 公開
星野 恭子, 松永 康佑, 古賀 信康, 高田 彰二, 小松崎 民樹 星野 恭子, 松永 康佑, 古賀 信康, 高田 彰二, 小松崎 民樹 Hoshino Kyoko, Matsunaga Ysuhiro, Koga Nobuyasu, Takada Shoji, Komatsuzaki Tamiki 31aPS-87 タンパク質フォールディングにおけるダイナミックス解析 : 非定常性・非マルコフ性ヘリックス・シート構造の相関 31aPS-87 タンパク質フォールディングにおけるダイナミックス解析 : 非定常性・非マルコフ性ヘリックス・シート構造の相関 Non-stationarity and non-Markovianity of foldings in small proteins 日本物理学会講演概要集, 58, 0 日本物理学会講演概要集, 58, 0 Meeting Abstracts of the Physical Society of Japan, 58, 0 2003 日本語 公開

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タイトル言語:
外部資金:競争的資金 (科学研究費補助金)
種別 代表/分担 テーマ(日本語) テーマ(英語) 期間
基盤研究(B) 蛋白質が主導する膜形態変化の分子シミュレーション研究 2007〜2009
新学術領域研究 蛋白質のレアな大振幅ゆらぎの理論解析:クラッキングの探索 2009〜2010
新学術領域研究(研究領域提案型) 蛋白質のレアな大振幅ゆらぎの理論解析:クラッキングの探索 2009〜2010
基盤研究(B) 生体分子モーターのシミュレーション研究:運動から化学反応制御への構造機能解析 2010〜2012
新学術領域研究(研究領域提案型) 代表 転写因子DNA探索のエネルギーランドスケープ理論:速度‐親和性パラドックス 2013〜2014
基盤研究(A) 代表 多機能多ドメイン蛋白質の構造可塑性と機能統合:構造からシステムへの理論研究 2013〜2016
特別研究員奨励費 代表 F型ATP合成酵素のFI複合体の構造、機能および選択性 2013〜2014
特別研究員奨励費 代表 F型ATP合成酵素のFI複合体の構造、機能および選択性 (平成26年度分) 2014/04/01〜2015/03/31
新学術領域研究(研究領域提案型) 代表 転写因子DNA探索のエネルギーランドスケープ理論:速度‐親和性パラドックス (平成26年度分) 2014/04/01〜2015/03/31
新学術領域研究(研究領域提案型) 代表 柔らかいタンパク質・DNA分子認識のマルチスケール計算研究 (平成26年度分) 2014/04/01〜2015/03/31
基盤研究(A) 代表 多機能多ドメイン蛋白質の構造可塑性と機能統合:構造からシステムへの理論研究 (平成26年度分) 2014/04/01〜2015/03/31
基盤研究(A) 代表 多機能多ドメイン蛋白質の構造可塑性と機能統合:構造からシステムへの理論研究 (平成27年度分) 2015/04/01〜2016/03/31
新学術領域研究(研究領域提案型) 代表 クロマチン構造と共役した転写因子動態の分子シミュレーション研究 (平成27年度分) 2015/04/01〜2016/03/31
新学術領域研究(研究領域提案型) 代表 柔らかいタンパク質・DNA分子認識のマルチスケール計算研究 (平成27年度分) 2015/04/01〜2016/03/31
新学術領域研究(研究領域提案型) 代表 転写因子DNA探索のエネルギーランドスケープ理論:速度-親和性パラドックス (平成27年度分) 2015/04/01〜2016/03/31
新学術領域研究(研究領域提案型) 代表 クロマチン構造と共役した転写因子動態の分子シミュレーション研究 (平成28年度分) 2016/04/01〜2017/03/31
新学術領域研究(研究領域提案型) 代表 ヌクレオソーム動構造とそのエピジェネティック制御の分子シミュレーション研究 (平成28年度分) 2016/04/01〜2017/03/31
基盤研究(A) 代表 多機能多ドメイン蛋白質の構造可塑性と機能統合:構造からシステムへの理論研究 (平成28年度分) 2016/04/01〜2017/03/31
新学術領域研究(研究領域提案型) 代表 クロマチン構造と共役した転写因子動態の分子シミュレーション研究 (平成28年度分) 2016/04/01〜2017/03/31
基盤研究(B) 代表 複雑生体分子複合系の状態遷移経路の探索と制御に関する理論研究 (平成28年度分) 2016/04/01〜2017/03/31
基盤研究(B) 代表 複雑生体分子複合系の状態遷移経路の探索と制御に関する理論研究 (平成29年度分) 2017/04/01〜2018/03/31
新学術領域研究(研究領域提案型) 代表 ヌクレオソーム動構造とそのエピジェネティック制御の分子シミュレーション研究 (平成29年度分) 2017/04/01〜2018/03/31
基盤研究(B) 代表 複雑生体分子複合系の状態遷移経路の探索と制御に関する理論研究 (平成30年度分) 2018/04/01〜2019/03/31

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担当科目
講義名(日本語) 講義名(英語) 開講期 学部/研究科 年度
理論生物物理学特論 後期 理学研究科 2011/04〜2012/03
理論生物物理学ゼミナールⅠA 前期 理学研究科 2011/04〜2012/03
理論生物物理学ゼミナールIB 後期 理学研究科 2011/04〜2012/03
理論生物物理学ゼミナールⅠC 前期 理学研究科 2011/04〜2012/03
理論生物物理学ゼミナールⅠD 後期 理学研究科 2011/04〜2012/03
理論生物物理学ゼミナールⅡA 前期 理学研究科 2011/04〜2012/03
理論生物物理学ゼミナールⅡB 後期 理学研究科 2011/04〜2012/03
理論生物物理学ゼミナールⅡC 前期 理学研究科 2011/04〜2012/03
理論生物物理学ゼミナールⅡD 後期 理学研究科 2011/04〜2012/03
分子生物物理学 後期 理学部 2011/04〜2012/03
生物学実習E (3) 後期 理学部 2011/04〜2012/03
生物学セミナ-B (7) 後期 理学部 2011/04〜2012/03
生命現象の生物物理学 Biophysical Basis of Biological Phenomena 前期 全学共通科目 2011/04〜2012/03
生物科学課題研究23 通年 理学部 2011/04〜2012/03
基礎生物学B Basic Biology B 後期 全学共通科目 2011/04〜2012/03
分子生物物理学 Molecular Biophysics 後期 理学部 2012/04〜2013/03
基礎生物学B Basic Biology B 後期 全学共通科目 2012/04〜2013/03
生命現象の生物物理学 Biophysical Basis of Biological Phenomena 前期 全学共通科目 2012/04〜2013/03
生物学セミナ-B Seminars in Biological Science B 後期 理学部 2012/04〜2013/03
生物学実習E Laboratory work in Biological Science E 後期 理学部 2012/04〜2013/03
生物科学課題研究23 Special Study CourseII(Biological Sciences) 23 通年 理学部 2012/04〜2013/03
分子生物物理学 Molecular Biophysics 後期 理学部 2013/04〜2014/03
生物学実習E Laboratory work in Biological Science E 後期 理学部 2013/04〜2014/03
生物学セミナ−B Seminars in Biological Science B 後期 理学部 2013/04〜2014/03
生物科学課題研究23 Special Study CourseII(Biological Sciences) 23 通年 理学部 2013/04〜2014/03
構造生物学 Structural Biology 後期 理学部 2013/04〜2014/03
生命現象の生物物理学 Biophysical Basis of Biological Phenomena 前期 全学共通科目 2013/04〜2014/03
分子生物物理学 Molecular Biophysics 後期 理学部 2014/04〜2015/03
生物学実習E Laboratory work in Biological Science E 後期 理学部 2014/04〜2015/03
生物学セミナ-B Seminars in Biological Science B 後期 理学部 2014/04〜2015/03
生物科学課題研究23 Special Study CourseII(Biological Sciences) 23 通年 理学部 2014/04〜2015/03
構造生物学 Structural Biology 後期 理学部 2014/04〜2015/03
理論生物物理学特論 Advanced course on Theoretical Biophysics 後期 理学研究科 2014/04〜2015/03
理論生物物理学ゼミナールIA Seminar on Theoretical Biophysics IA 前期 理学研究科 2014/04〜2015/03
理論生物物理学ゼミナールIB Seminar on Theoretical Biophysics IB 後期 理学研究科 2014/04〜2015/03
理論生物物理学ゼミナールIC Seminar on Theoretical Biophysics IC 前期 理学研究科 2014/04〜2015/03
理論生物物理学ゼミナールID Seminar on Theoretical Biophysics ID 後期 理学研究科 2014/04〜2015/03
理論生物物理学ゼミナールIIA Seminar on Theoretical Biophysics IIA 前期 理学研究科 2014/04〜2015/03
理論生物物理学ゼミナールIIB Seminar on Theoretical Biophysics IIB 後期 理学研究科 2014/04〜2015/03
理論生物物理学ゼミナールIIC Seminar on Theoretical Biophysics IIC 前期 理学研究科 2014/04〜2015/03
理論生物物理学ゼミナールIID Seminar on Theoretical Biophysics IID 後期 理学研究科 2014/04〜2015/03
生命現象の生物物理学 Biophysical Basis of Biological Phenomena 前期 全学共通科目 2014/04〜2015/03
分子生物物理学 Molecular Biophysics 後期 理学部 2015/04〜2016/03
構造生物学 Structural Biology 後期 理学部 2015/04〜2016/03
理論生物物理学ゼミナールIA Seminar on Theoretical Biophysics IA 前期 理学研究科 2015/04〜2016/03
理論生物物理学ゼミナールIB Seminar on Theoretical Biophysics IB 後期 理学研究科 2015/04〜2016/03
理論生物物理学ゼミナールIC Seminar on Theoretical Biophysics IC 前期 理学研究科 2015/04〜2016/03
理論生物物理学ゼミナールID Seminar on Theoretical Biophysics ID 後期 理学研究科 2015/04〜2016/03
理論生物物理学ゼミナールIIA Seminar on Theoretical Biophysics IIA 前期 理学研究科 2015/04〜2016/03
理論生物物理学ゼミナールIIB Seminar on Theoretical Biophysics IIB 後期 理学研究科 2015/04〜2016/03
理論生物物理学ゼミナールIIC Seminar on Theoretical Biophysics IIC 前期 理学研究科 2015/04〜2016/03
理論生物物理学ゼミナールIID Seminar on Theoretical Biophysics IID 後期 理学研究科 2015/04〜2016/03
理論生物物理学特論 Advanced course on Theoretical Biophysics 後期 理学研究科 2015/04〜2016/03
生命現象の生物物理学 Biophysical Basis of Biological Phenomena 前期 全学共通科目 2015/04〜2016/03
生物学セミナ-B Seminars in Biological Science B 後期 理学部 2015/04〜2016/03
生物学実習E Laboratory work in Biological Science E 後期 理学部 2015/04〜2016/03
生物科学課題研究23 Special Study CourseII(Biological Sciences) 23 通年 理学部 2015/04〜2016/03
分子生物物理学 Molecular Biophysics 後期 理学部 2016/04〜2017/03
構造生物学 Structural Biology 後期 理学部 2016/04〜2017/03
理論生物物理学ゼミナールIA Seminar on Theoretical Biophysics IA 前期 理学研究科 2016/04〜2017/03
理論生物物理学ゼミナールIB Seminar on Theoretical Biophysics IB 後期 理学研究科 2016/04〜2017/03
理論生物物理学ゼミナールIC Seminar on Theoretical Biophysics IC 前期 理学研究科 2016/04〜2017/03
理論生物物理学ゼミナールID Seminar on Theoretical Biophysics ID 後期 理学研究科 2016/04〜2017/03
理論生物物理学ゼミナールIIA Seminar on Theoretical Biophysics IIA 前期 理学研究科 2016/04〜2017/03
理論生物物理学ゼミナールIIB Seminar on Theoretical Biophysics IIB 後期 理学研究科 2016/04〜2017/03
理論生物物理学ゼミナールIIC Seminar on Theoretical Biophysics IIC 前期 理学研究科 2016/04〜2017/03
理論生物物理学ゼミナールIID Seminar on Theoretical Biophysics IID 後期 理学研究科 2016/04〜2017/03
理論生物物理学特論 Advanced course on Theoretical Biophysics 後期 理学研究科 2016/04〜2017/03
生物学セミナ-B Seminars in Biological Science B 後期 理学部 2016/04〜2017/03
生物学実習E Laboratory work in Biological Science E 後期集中 理学部 2016/04〜2017/03
生物物理学入門 Introduction to Biophysics 前期 全学共通科目 2016/04〜2017/03
生物科学課題研究23 Special Study CourseII(Biological Sciences) 23 通年 理学部 2016/04〜2017/03
分子生物物理学 Molecular Biophysics 後期 理学部 2017/04〜2018/03
構造生物学 Structural Biology 後期 理学部 2017/04〜2018/03
理論生物物理学ゼミナールIA Seminar on Theoretical Biophysics IA 前期 理学研究科 2017/04〜2018/03
理論生物物理学ゼミナールIB Seminar on Theoretical Biophysics IB 後期 理学研究科 2017/04〜2018/03
理論生物物理学ゼミナールIC Seminar on Theoretical Biophysics IC 前期 理学研究科 2017/04〜2018/03
理論生物物理学ゼミナールID Seminar on Theoretical Biophysics ID 後期 理学研究科 2017/04〜2018/03
理論生物物理学ゼミナールIIA Seminar on Theoretical Biophysics IIA 前期 理学研究科 2017/04〜2018/03
理論生物物理学ゼミナールIIB Seminar on Theoretical Biophysics IIB 後期 理学研究科 2017/04〜2018/03
理論生物物理学ゼミナールIIC Seminar on Theoretical Biophysics IIC 前期 理学研究科 2017/04〜2018/03
理論生物物理学ゼミナールIID Seminar on Theoretical Biophysics IID 後期 理学研究科 2017/04〜2018/03
理論生物物理学特論 Advanced course on Theoretical Biophysics 後期 理学研究科 2017/04〜2018/03
生物学セミナ-B Seminars in Biological Science B 後期 理学部 2017/04〜2018/03
生物学実習E Laboratory work in Biological Science E 後期集中 理学部 2017/04〜2018/03
生物物理学入門 Introduction to Biophysics 前期 全学共通科目 2017/04〜2018/03
生物科学課題研究23 Special Study CourseII(Biological Sciences) 23 通年 理学部 2017/04〜2018/03
分子生物物理学 Molecular Biophysics 後期 理学部 2018/04〜2019/03
構造生物学 Structural Biology 後期 理学部 2018/04〜2019/03
理論生物物理学ゼミナールIA Seminar on Theoretical Biophysics IA 前期 理学研究科 2018/04〜2019/03
理論生物物理学ゼミナールIB Seminar on Theoretical Biophysics IB 後期 理学研究科 2018/04〜2019/03
理論生物物理学ゼミナールIC Seminar on Theoretical Biophysics IC 前期 理学研究科 2018/04〜2019/03
理論生物物理学ゼミナールID Seminar on Theoretical Biophysics ID 後期 理学研究科 2018/04〜2019/03
理論生物物理学ゼミナールIIA Seminar on Theoretical Biophysics IIA 前期 理学研究科 2018/04〜2019/03
理論生物物理学ゼミナールIIB Seminar on Theoretical Biophysics IIB 後期 理学研究科 2018/04〜2019/03
理論生物物理学ゼミナールIIC Seminar on Theoretical Biophysics IIC 前期 理学研究科 2018/04〜2019/03
理論生物物理学ゼミナールIID Seminar on Theoretical Biophysics IID 後期 理学研究科 2018/04〜2019/03
理論生物物理学特論 Advanced course on Theoretical Biophysics 後期 理学研究科 2018/04〜2019/03
生物学セミナ-B Seminars in Biological Science B 後期 理学部 2018/04〜2019/03
生物学実習E Laboratory work in Biological Science E 後期集中 理学部 2018/04〜2019/03
生物物理学入門 Introduction to Biophysics 前期 全学共通科目 2018/04〜2019/03
生物科学課題研究23 Special Study CourseII(Biological Sciences) 23 通年 理学部 2018/04〜2019/03
分子生物物理学 Molecular Biophysics 後期 理学部 2019/04〜2020/03
構造生物学 Structural Biology 後期 理学部 2019/04〜2020/03
理論生物物理学ゼミナールIA Seminar on Theoretical Biophysics IA 前期 理学研究科 2019/04〜2020/03
理論生物物理学ゼミナールIB Seminar on Theoretical Biophysics IB 後期 理学研究科 2019/04〜2020/03
理論生物物理学ゼミナールIC Seminar on Theoretical Biophysics IC 前期 理学研究科 2019/04〜2020/03
理論生物物理学ゼミナールID Seminar on Theoretical Biophysics ID 後期 理学研究科 2019/04〜2020/03
理論生物物理学ゼミナールIIA Seminar on Theoretical Biophysics IIA 前期 理学研究科 2019/04〜2020/03
理論生物物理学ゼミナールIIB Seminar on Theoretical Biophysics IIB 後期 理学研究科 2019/04〜2020/03
理論生物物理学ゼミナールIIC Seminar on Theoretical Biophysics IIC 前期 理学研究科 2019/04〜2020/03
理論生物物理学ゼミナールIID Seminar on Theoretical Biophysics IID 後期 理学研究科 2019/04〜2020/03
理論生物物理学特論 Advanced course on Theoretical Biophysics 後期 理学研究科 2019/04〜2020/03
生物学セミナ-B Seminars in Biological Science B 後期 理学部 2019/04〜2020/03
生物学実習E Laboratory work in Biological Science E 後期集中 理学部 2019/04〜2020/03
生物物理学入門 Introduction to Biophysics 前期 全学共通科目 2019/04〜2020/03
生物科学課題研究23 Special Study CourseII(Biological Sciences) 23 通年 理学部 2019/04〜2020/03
分子生物物理学 Molecular Biophysics 後期 理学部 2020/04〜2021/03
構造生物学 Structural Biology 後期 理学部 2020/04〜2021/03
理論生物物理学ゼミナールIA Seminar on Theoretical Biophysics IA 前期 理学研究科 2020/04〜2021/03
理論生物物理学ゼミナールIB Seminar on Theoretical Biophysics IB 後期 理学研究科 2020/04〜2021/03
理論生物物理学ゼミナールIC Seminar on Theoretical Biophysics IC 前期 理学研究科 2020/04〜2021/03
理論生物物理学ゼミナールID Seminar on Theoretical Biophysics ID 後期 理学研究科 2020/04〜2021/03
理論生物物理学ゼミナールIIA Seminar on Theoretical Biophysics IIA 前期 理学研究科 2020/04〜2021/03
理論生物物理学ゼミナールIIB Seminar on Theoretical Biophysics IIB 後期 理学研究科 2020/04〜2021/03
理論生物物理学ゼミナールIIC Seminar on Theoretical Biophysics IIC 前期 理学研究科 2020/04〜2021/03
理論生物物理学ゼミナールIID Seminar on Theoretical Biophysics IID 後期 理学研究科 2020/04〜2021/03
理論生物物理学特論 Advanced course on Theoretical Biophysics 後期 理学研究科 2020/04〜2021/03
生物学セミナ-B (7) Seminars in Biological Science B 後期 理学部 2020/04〜2021/03
生物学実習E (3) Laboratory Work in Biological Science E 後期集中 理学部 2020/04〜2021/03
生物物理学入門 Introduction to Biophysics 前期 全学共通科目 2020/04〜2021/03
生物科学特論A Advanced Course on Biological Science A 前期 理学研究科 2020/04〜2021/03
生物科学課題研究23 Special Study CourseII(Biological Sciences) 23 通年 理学部 2020/04〜2021/03

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全学運営(役職等)
役職名 期間
広報委員会 委員 2015/04/01〜2017/03/31
広報委員会 ホームページ企画専門部会 2015/04/01〜2017/03/31
広報委員会 ホームページ企画専門部会 2015/04/01〜2017/03/31
国際高等教育院 企画評価専門委員会 初修外国語部会 委員 2018/04/01〜2019/03/31
国際高等教育院 企画評価専門委員会 初修外国語部会 委員 2019/04/01〜2020/03/31
国際高等教育院 企画評価専門委員会 初修外国語部会 委員 2020/04/01〜2021/03/31
部局運営(役職等)
役職名 期間
生物科学専攻・副専攻長 2014/04/01〜2015/03/31
理学研究科動物実験委員会委員 2014/04/01〜2015/03/31
理学研究科会議構成員 2014/04/01〜2015/05/01
理学研究科自己点検・評価委員会委員 2015/04/01〜2016/03/31
理学研究科会議構成員 2014/04/01〜2015/03/31
理学研究科人権擁護委員会委員 2015/04/01〜2016/03/31
理学研究科情報・広報委員会委員 2015/04/01〜2016/03/31
理学研究科情報セキュリティ委員会委員 2015/04/01〜2016/03/31
理学研究科人権擁護委員会委員 2016/04/01〜2017/03/31
理学研究科情報・広報委員会委員 2016/04/01〜2017/03/31
理学研究科情報セキュリティ委員会委員 2016/04/01〜2017/03/31
理学研究科動物実験委員会委員 2017/04/01〜2018/03/31
理学研究科情報セキュリティ委員会委員 2017/04/01〜2018/03/31
理学研究科セミナーハウス管理運営委員会委員 2017/04/01〜2019/03/31
理学研究科基金運営委員会委員 2017/04/01〜2018/03/31
理学研究科サイエンス倶楽部運営委員会委員 2017/04/01〜2018/03/31
理学研究科会議構成員 2017/04/01〜2018/03/31
理学研究科専攻長会議構成員 2017/04/01〜2018/03/31
理学研究科生物科学専攻副専攻長 2017/04/01〜2018/03/31
福井謙一記念研究センター運営委員会委員 2015/04/01〜2019/03/31
理学研究科セミナーハウス管理運営委員会委員 2017/04/01〜2018/03/31
理学研究科基金運営委員会委員 2017/04/01〜2019/03/31
理学研究科サイエンス倶楽部運営委員会委員 2017/05/01〜2018/03/31
国際高等教育院企画評価専門委員会分野別部会委員 2016/05/01〜2019/03/31
理学部・教育委員会委員 2018/04/01〜2019/03/31
理学部・教育委員会 情報・統計・データ科学教育委員会委員 2018/04/01〜2019/03/31
理学研究科大学院教育教務委員会委員 2018/04/01〜2019/03/31
理学研究科情報セキュリティ委員会委員 2018/04/01〜2019/03/31
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