荒 武

Last Update: 2018/06/05 18:40:11

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Name(Kanji/Kana/Abecedarium Latinum)
荒 武/アラ タケシ/Takeshi Ara
Primary department(Org1/Job title)
Graduate Schools Agriculture/Program-Specific Associate Professor
Faculty
Org1 Job title
農学部
E-mail address
メールアドレス
ara @ kais.kyoto-u.ac.jp
Affiliated academic organization(s) (Japanese)
Organization name(Japanese) Organization name(English)
日本バイオインフォマティクス学会 Japanese Society for Bioinformatics
日本植物細胞分子生物学会 Japanese Society for Plant Cell and Molecular Biology
日本質量分析学会 The Mass Spectrometry Society of Japan
日本食品科学工学会 The Japanese Society for Food Science and Technology
Academic degree
Field(Japanese) Field(English) University(Japanese) University(English) Method
修士(農学) 京都大学
博士(農学) 京都大学
Personal website address
URL
http://www.kagometomato.kais.kyoto-u.ac.jp/
http://researchmap.jp/read0116102
http://www.foodfunc.kais.kyoto-u.ac.jp/
Research Topics
(Japanese)
トマト代謝成分のメタボローム解析
(English)
Metabolome analysis of tomato
Overview of your research
(Japanese)
トマトを中心とした野菜等のメタボローム代謝成分の多様性について、生物情報学的手法(バイオインフォマティクス、データベース、オミックス科学)を用いた研究を行っている。
Fields of research (key words)
Key words(Japanese) Key words(English)
バイオインフォマティクス Bioinformatics
データベース Database
メタボローム Metabolome
ゲノム Genome
Published Papers
Author Author(Japanese) Author(English) Title Title(Japanese) Title(English) Bibliography Bibliography(Japanese) Bibliography(English) Publication date Refereed paper Language Publishing type Disclose
Mohri S, Takahashi H, Sakai M, Takahashi S, Waki N, Aizawa K, Suganuma H, Ara T, Shibata D, Goto T and Kawada T Mohri S, Takahashi H, Sakai M, Takahashi S, Waki N, Aizawa K, Suganuma H, Ara T, Shibata D, Goto T and Kawada T Mohri S, Takahashi H, Sakai M, Takahashi S, Waki N, Aizawa K, Suganuma H, Ara T, Shibata D, Goto T and Kawada T Wide-range screening of anti-inflammatory compounds in tomato using LC-MS and elucidating the mechanism of their functions. Wide-range screening of anti-inflammatory compounds in tomato using LC-MS and elucidating the mechanism of their functions. Wide-range screening of anti-inflammatory compounds in tomato using LC-MS and elucidating the mechanism of their functions. ,13,1,e0191203 ,13,1,e0191203 ,13,1,e0191203 2018 Refereed English Research paper(scientific journal) Disclose to all
荒 武、青江誠一郎、渡邊 昌 荒 武、青江誠一郎、渡邊 昌 新世代の栄養学研究メタボローム 新世代の栄養学研究メタボローム 医と食,9,1,9-16 医と食,9,1,9-16 ,9,1,9-16 2017/02 Japanese Disclose to all
Ara T, Takahashi S, Waki N, Sakurai N, Aizawa K, Suganuma H, Matsumura Y, Kawada T and Shibata D Ara T, Takahashi S, Waki N, Sakurai N, Aizawa K, Suganuma H, Matsumura Y, Kawada T and Shibata D Ara T, Takahashi S, Waki N, Sakurai N, Aizawa K, Suganuma H, Matsumura Y, Kawada T and Shibata D Comparative metabolomic analysis of two tomato cultivars during fruit maturation Comparative metabolomic analysis of two tomato cultivars during fruit maturation Comparative metabolomic analysis of two tomato cultivars during fruit maturation Acta Horticulturae,1159,101-106 Acta Horticulturae,1159,101-106 Acta Horticulturae,1159,101-106 2017 Refereed English Research paper(international conference proceedings) Disclose to all
Takahashi H, Sanada K, Nagai H, Li Y, Aoki Y, Ara T, Seno S, Matsuda H, Yu R, Kawada T and Goto T Takahashi H, Sanada K, Nagai H, Li Y, Aoki Y, Ara T, Seno S, Matsuda H, Yu R, Kawada T and Goto T Takahashi H, Sanada K, Nagai H, Li Y, Aoki Y, Ara T, Seno S, Matsuda H, Yu R, Kawada T and Goto T Over-expression of PPARalpha in obese mice adipose tissue improves insulin sensitivity. Over-expression of PPARalpha in obese mice adipose tissue improves insulin sensitivity. Over-expression of PPARalpha in obese mice adipose tissue improves insulin sensitivity. Biochemical and Biophysical Research Communications,493,1,108-114 Biochemical and Biophysical Research Communications,493,1,108-114 Biochemical and Biophysical Research Communications,493,1,108-114 2017 Refereed English Research paper(scientific journal) Disclose to all
Akimoto N, Ara T, Nakajima D, Suda K, Ikeda C, Takahashi S, Muneto R, Yamada M, Suzuki H, Shibata D, Sakurai N Akimoto N, Ara T, Nakajima D, Suda K, Ikeda C, Takahashi S, Muneto R, Yamada M, Suzuki H, Shibata D, Sakurai N Akimoto N, Ara T, Nakajima D, Suda K, Ikeda C, Takahashi S, Muneto R, Yamada M, Suzuki H, Shibata D, Sakurai N FlavonoidSearch: A system for comprehensive flavonoid annotation by mass spectrometry FlavonoidSearch: A system for comprehensive flavonoid annotation by mass spectrometry FlavonoidSearch: A system for comprehensive flavonoid annotation by mass spectrometry Scientific Reports,7,1243 Scientific Reports,7,1243 Scientific Reports,7,1243 2017 Refereed English Research paper(scientific journal) Disclose to all
ARA Takeshi 荒 武 ARA Takeshi The first step to study the metabolome - A new world of the food science メタボロームはじめの一歩 - 食品の新しい姿を求めて The first step to study the metabolome - A new world of the food science ENGINEERING MATERIALS,64,9 工業材料,64,9 ENGINEERING MATERIALS,64,9 2016/08 Japanese Research paper(scientific journal) Disclose to all
Yamamoto N, Ara T, Sakurai N, Tsugane T, Suzuki H and Shibata D Yamamoto N, Ara T, Sakurai N, Tsugane T, Suzuki H and Shibata D Yamamoto N, Ara T, Sakurai N, Tsugane T, Suzuki H and Shibata D An improved MatchedIonsFinder algorithm for refining ion feature assignments among chromatograms in liquid chromatography-mass spectrometry An improved MatchedIonsFinder algorithm for refining ion feature assignments among chromatograms in liquid chromatography-mass spectrometry An improved MatchedIonsFinder algorithm for refining ion feature assignments among chromatograms in liquid chromatography-mass spectrometry Journal of Life Sciences and Technologies,4,2,75-78 Journal of Life Sciences and Technologies,4,2,75-78 Journal of Life Sciences and Technologies,4,2,75-78 2016 Refereed English Research paper(scientific journal) Disclose to all
Fukuura M, Ara T, Takeda M, Shibata D, Mitsuzawa S Fukuura M, Ara T, Takeda M, Shibata D, Mitsuzawa S Fukuura M, Ara T, Takeda M, Shibata D, Mitsuzawa S A new approach to construct a synthetic mixture of saccharifying enzymes A new approach to construct a synthetic mixture of saccharifying enzymes A new approach to construct a synthetic mixture of saccharifying enzymes Lignocellulose degradation and biorefinery,262-264 Lignocellulose degradation and biorefinery,262-264 Lignocellulose degradation and biorefinery,262-264 2015 Refereed English Research paper(international conference proceedings) Disclose to all
Ara T, Enomoto M, Arita M, Ikeda C, Kera K, Yamada M, Nishioka T, Ikeda T, Nihei Y, Shibata D, Kanaya S, Sakurai N Ara T, Enomoto M, Arita M, Ikeda C, Kera K, Yamada M, Nishioka T, Ikeda T, Nihei Y, Shibata D, Kanaya S, Sakurai N Ara T, Enomoto M, Arita M, Ikeda C, Kera K, Yamada M, Nishioka T, Ikeda T, Nihei Y, Shibata D, Kanaya S, Sakurai N Metabolonote: A wiki-based database for managing hierarchical metadata of metabolome analyses Metabolonote: A wiki-based database for managing hierarchical metadata of metabolome analyses Metabolonote: A wiki-based database for managing hierarchical metadata of metabolome analyses Frontiers in Bioengineering and Biotechnology,3,38 Frontiers in Bioengineering and Biotechnology,3,38 Frontiers in Bioengineering and Biotechnology,3,38 2015 Refereed English Research paper(scientific journal) Disclose to all
Sakurai N, Ara T, Enomoto M, Motegi T, Morishita Y, Kurabayashi A, Iijima Y, Ogata Y, Nakajima D, Suzuki H and Shibata D Sakurai N, Ara T, Enomoto M, Motegi T, Morishita Y, Kurabayashi A, Iijima Y, Ogata Y, Nakajima D, Suzuki H and Shibata D Sakurai N, Ara T, Enomoto M, Motegi T, Morishita Y, Kurabayashi A, Iijima Y, Ogata Y, Nakajima D, Suzuki H and Shibata D Tools and Databases of the KOMICS Web Portal for Preprocessing, Mining, and Dissemination of Metabolomics Data Tools and Databases of the KOMICS Web Portal for Preprocessing, Mining, and Dissemination of Metabolomics Data Tools and Databases of the KOMICS Web Portal for Preprocessing, Mining, and Dissemination of Metabolomics Data BioMed Research International,2014,Bioinformatics,194812 BioMed Research International,2014,Bioinformatics,194812 BioMed Research International,2014,Bioinformatics,194812 2014 Refereed English Research paper(scientific journal) Disclose to all
Kota Kera, Yoshiyuki Ogata, Takeshi Ara, Yoshiki Nagashima, Norimoto Shimada, Nozomu Sakurai, Daisuke Shibata, Hideyuki Suzuki Kota Kera, Yoshiyuki Ogata, Takeshi Ara, Yoshiki Nagashima, Norimoto Shimada, Nozomu Sakurai, Daisuke Shibata, Hideyuki Suzuki Kota Kera, Yoshiyuki Ogata, Takeshi Ara, Yoshiki Nagashima, Norimoto Shimada, Nozomu Sakurai, Daisuke Shibata, Hideyuki Suzuki ShiftedIonsFinder: A standalone Java tool for finding peaks with specified mass differences by comparing mass spectra of isotope-labeled and unlabeled data sets ShiftedIonsFinder: A standalone Java tool for finding peaks with specified mass differences by comparing mass spectra of isotope-labeled and unlabeled data sets ShiftedIonsFinder: A standalone Java tool for finding peaks with specified mass differences by comparing mass spectra of isotope-labeled and unlabeled data sets Plant Biotechnology,31,3,269-274 Plant Biotechnology,31,3,269-274 Plant Biotechnology,31,3,269-274 2014 Refereed English Research paper(scientific journal) Disclose to all
Sakurai N, Ara T, Kanaya S, Nakamura Y, Iijima Y, Enomoto M, Motegi T, Aoki K, Suzuki H and Shibata D Sakurai N, Ara T, Kanaya S, Nakamura Y, Iijima Y, Enomoto M, Motegi T, Aoki K, Suzuki H and Shibata D Sakurai N, Ara T, Kanaya S, Nakamura Y, Iijima Y, Enomoto M, Motegi T, Aoki K, Suzuki H and Shibata D An application of a relational database system for high-throughput prediction of elemental compositions from accurate mass values. An application of a relational database system for high-throughput prediction of elemental compositions from accurate mass values. An application of a relational database system for high-throughput prediction of elemental compositions from accurate mass values. Bioinformatics,29,2,290-291 Bioinformatics,29,2,290-291 Bioinformatics,29,2,290-291 2013 Refereed English Research paper(scientific journal) Disclose to all
Yamamoto N, Suzuki T, Ara T, Sakurai N, Shinpo S, Morishita Y, Sasaki R, Tsugane T, Suzuki H and Shibata D Yamamoto N, Suzuki T, Ara T, Sakurai N, Shinpo S, Morishita Y, Sasaki R, Tsugane T, Suzuki H and Shibata D Yamamoto N, Suzuki T, Ara T, Sakurai N, Shinpo S, Morishita Y, Sasaki R, Tsugane T, Suzuki H and Shibata D MatchedIonsFinder: A software tool for revising alignment matrices of spectrograms from liquid chromatography-mass spectrometry MatchedIonsFinder: A software tool for revising alignment matrices of spectrograms from liquid chromatography-mass spectrometry MatchedIonsFinder: A software tool for revising alignment matrices of spectrograms from liquid chromatography-mass spectrometry Plant Biotechnology,29,1,109-113 Plant Biotechnology,29,1,109-113 Plant Biotechnology,29,1,109-113 2012 Refereed English Research paper(scientific journal) Disclose to all
Sano R, Ara T, Akimoto N, Sakurai N, Suzuki H, Fukuzawa Y, Kawamitsu Y, Ueno M and Shibata D Sano R, Ara T, Akimoto N, Sakurai N, Suzuki H, Fukuzawa Y, Kawamitsu Y, Ueno M and Shibata D Sano R, Ara T, Akimoto N, Sakurai N, Suzuki H, Fukuzawa Y, Kawamitsu Y, Ueno M and Shibata D Dynamic metabolic changes during fruit maturation in Jatropha curcas L. Dynamic metabolic changes during fruit maturation in Jatropha curcas L. Dynamic metabolic changes during fruit maturation in Jatropha curcas L. Plant Biotechnology,29,2,175-178 Plant Biotechnology,29,2,175-178 Plant Biotechnology,29,2,175-178 2012 Refereed English Research paper(scientific journal) Disclose to all
Sakurai N, Ogata Y, Ara T, Sano R, Akimoto N, Suzuki H, Kajikawa M, Widyastuti U, Suharsono S, Yokota A, Akashi K, Kikuchi J and Shibata D Sakurai N, Ogata Y, Ara T, Sano R, Akimoto N, Suzuki H, Kajikawa M, Widyastuti U, Suharsono S, Yokota A, Akashi K, Kikuchi J and Shibata D Sakurai N, Ogata Y, Ara T, Sano R, Akimoto N, Suzuki H, Kajikawa M, Widyastuti U, Suharsono S, Yokota A, Akashi K, Kikuchi J and Shibata D Development of KaPPA-View4 for omics studies on Jatropha and a database system KaPPA-Loader for construction of local omics databases Development of KaPPA-View4 for omics studies on Jatropha and a database system KaPPA-Loader for construction of local omics databases Development of KaPPA-View4 for omics studies on Jatropha and a database system KaPPA-Loader for construction of local omics databases Plant Biotechnology,29,2,131-135 Plant Biotechnology,29,2,131-135 Plant Biotechnology,29,2,131-135 2012 Refereed English Research paper(scientific journal) Disclose to all
Sakurai N, Ara T, Ogata Y, Sano R, Ohno T, Sugiyama K, Hiruta A, Yamazaki K, Yano K, Aoki K, Aharoni A, Hamada K, Yokoyama, Kawamura S, Otsuka H, Tokimatsu T, Kanehisa M, Suzuki H, Saito K and Shibata G Sakurai N, Ara T, Ogata Y, Sano R, Ohno T, Sugiyama K, Hiruta A, Yamazaki K, Yano K, Aoki K, Aharoni A, Hamada K, Yokoyama, Kawamura S, Otsuka H, Tokimatsu T, Kanehisa M, Suzuki H, Saito K and Shibata G Sakurai N, Ara T, Ogata Y, Sano R, Ohno T, Sugiyama K, Hiruta A, Yamazaki K, Yano K, Aoki K, Aharoni A, Hamada K, Yokoyama, Kawamura S, Otsuka H, Tokimatsu T, Kanehisa M, Suzuki H, Saito K and Shibata G KaPPA-View4: A metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data KaPPA-View4: A metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data KaPPA-View4: A metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data Nucleic Acids Research,39,677-684 Nucleic Acids Research,39,677-684 Nucleic Acids Research,39,677-684 2011 Refereed English Research paper(scientific journal) Disclose to all
Ogawa T, Ara T, Aoki K, Suzuki H and Shibata D Ogawa T, Ara T, Aoki K, Suzuki H and Shibata D Ogawa T, Ara T, Aoki K, Suzuki H and Shibata D Transient increase in salicylic acid and its glucose conjugates after wounding in Arabidopsis leaves. Transient increase in salicylic acid and its glucose conjugates after wounding in Arabidopsis leaves Transient increase in salicylic acid and its glucose conjugates after wounding in Arabidopsis leaves. Plant Biotechnology,27,2,205-209 Plant Biotechnology,27,2,205-209 Plant Biotechnology,27,2,205-209 2010 Refereed English Research paper(scientific journal) Disclose to all
Aono E, Baba T, Ara T, Nishi T, Nakamichi T, Inamoto E, Toyonaga H, Hasegawa M, Takai Y, Okumura Y, Baba M, Tomita M, Kato C, Oshima T, Nakasone K and Mori H Aono E, Baba T, Ara T, Nishi T, Nakamichi T, Inamoto E, Toyonaga H, Hasegawa M, Takai Y, Okumura Y, Baba M, Tomita M, Kato C, Oshima T, Nakasone K and Mori H Aono E, Baba T, Ara T, Nishi T, Nakamichi T, Inamoto E, Toyonaga H, Hasegawa M, Takai Y, Okumura Y, Baba M, Tomita M, Kato C, Oshima T, Nakasone K and Mori H Complete genome sequence and comparative analysis of Shewanella violacea, a psychrophilic and piezophilic bacterium from deep sea floor sediments. Complete genome sequence and comparative analysis of Shewanella violacea, a psychrophilic and piezophilic bacterium from deep sea floor sediments Complete genome sequence and comparative analysis of Shewanella violacea, a psychrophilic and piezophilic bacterium from deep sea floor sediments. Molecular BioSystems,6,7,1216-1226 Molecular BioSystems,6,7,1216-1226 Molecular BioSystems,6,7,1216-1226 2010 Refereed English Research paper(scientific journal) Disclose to all
Horai H, Arita M, Kanaya S, Nihei Y, Ikeda T, Suwa K, Ojima Y, Tanaka K, Tanaka S, Aoshima K, Oda Y, Kakazu Y, Kusano M, Tohge T, Matsuda F, Sawada Y, Hirai MY, Nakanishi H, Ikeda K, Akimoto N, Maoka T, Takahashi H, Ara T, Sakurai N, Suzuki H, Shibata D, Neumann S, Iida T, Tanaka K, Funatsu K, Matsuura F, Soga T, Taguchi R, Saito K, Nishioka T Horai H, Arita M, Kanaya S, Nihei Y, Ikeda T, Suwa K, Ojima Y, Tanaka K, Tanaka S, Aoshima K, Oda Y, Kakazu Y, Kusano M, Tohge T, Matsuda F, Sawada Y, Hirai MY, Nakanishi H, Ikeda K, Akimoto N, Maoka T, Takahashi H, Ara T, Sakurai N, Suzuki H, Shibata D, Neumann S, Iida T, Tanaka K, Funatsu K, Matsuura F, Soga T, Taguchi R, Saito K, Nishioka T Horai H, Arita M, Kanaya S, Nihei Y, Ikeda T, Suwa K, Ojima Y, Tanaka K, Tanaka S, Aoshima K, Oda Y, Kakazu Y, Kusano M, Tohge T, Matsuda F, Sawada Y, Hirai MY, Nakanishi H, Ikeda K, Akimoto N, Maoka T, Takahashi H, Ara T, Sakurai N, Suzuki H, Shibata D, Neumann S, Iida T, Tanaka K, Funatsu K, Matsuura F, Soga T, Taguchi R, Saito K, Nishioka T MassBank: a public repository for sharing mass spectral data for life sciences. MassBank: a public repository for sharing mass spectral data for life sciences MassBank: a public repository for sharing mass spectral data for life sciences. Journal of Mass Spectrometry,45,7,703-714 Journal of Mass Spectrometry,45,7,703-714 Journal of Mass Spectrometry,45,7,703-714 2010 Refereed English Research paper(scientific journal) Disclose to all
Koscielny G, Le Texier V, Gopalakrishnan C, Kumanduri V, Riethoven JJ, Nardone F, Stanley E, Fallsehr C, Hofmann O, Kull M, Harrington E, Boue S, Eyras E, Plass M, Lopez F, Ritchie W, Moucadel V, Ara T, Pospisil H, Herrmann A, G Reich J, Guigo R, Bork P, Doeberitz MK, Vilo J, Hide W, Apweiler R, Thanaraj TA, Gautheret D Koscielny G, Le Texier V, Gopalakrishnan C, Kumanduri V, Riethoven JJ, Nardone F, Stanley E, Fallsehr C, Hofmann O, Kull M, Harrington E, Boue S, Eyras E, Plass M, Lopez F, Ritchie W, Moucadel V, Ara T, Pospisil H, Herrmann A, G Reich J, Guigo R, Bork P, Doeberitz MK, Vilo J, Hide W, Apweiler R, Thanaraj TA, Gautheret D Koscielny G, Le Texier V, Gopalakrishnan C, Kumanduri V, Riethoven JJ, Nardone F, Stanley E, Fallsehr C, Hofmann O, Kull M, Harrington E, Boue S, Eyras E, Plass M, Lopez F, Ritchie W, Moucadel V, Ara T, Pospisil H, Herrmann A, G Reich J, Guigo R, Bork P, Doeberitz MK, Vilo J, Hide W, Apweiler R, Thanaraj TA, Gautheret D ASTD: The Alternative Splicing and Transcript Diversity database. ASTD: The Alternative Splicing and Transcript Diversity database ASTD: The Alternative Splicing and Transcript Diversity database. Genomics,93,3,213-220 Genomics,93,3,213-220 Genomics,93,3,213-220 2009 Refereed English Research paper(scientific journal) Disclose to all
Ara T, Sakurai N, Tange Y, Morishita Y, Suzuki H, Aoki K, Saito K and Shibata D Ara T, Sakurai N, Tange Y, Morishita Y, Suzuki H, Aoki K, Saito K and Shibata D Ara T, Sakurai N, Tange Y, Morishita Y, Suzuki H, Aoki K, Saito K and Shibata D Improvement of the quantitative differential metabolome pipeline for gas chromatography-mass spectrometry data by automated reliable peak selection. Improvement of the quantitative differential metabolome pipeline for gas chromatography-mass spectrometry data by automated reliable peak selection Improvement of the quantitative differential metabolome pipeline for gas chromatography-mass spectrometry data by automated reliable peak selection. Plant Biotechnology,26,5,445-449 Plant Biotechnology,26,5,445-449 Plant Biotechnology,26,5,445-449 2009 Refereed English Research paper(scientific journal) Disclose to all
Chen C, Ara T and Gautheret D. Chen C, Ara T and Gautheret D. Chen C, Ara T and Gautheret D. Using Alu Elements as Polyadenylation Sites: A Case of Retroposon Exaptation. Using Alu Elements as Polyadenylation Sites: A Case of Retroposon Exaptation Using Alu Elements as Polyadenylation Sites: A Case of Retroposon Exaptation. Molecular Biology and Evolution,26,2,327-334 Molecular Biology and Evolution,26,2,327-334 Molecular Biology and Evolution,26,2,327-334 2008 Refereed English Research paper(scientific journal) Disclose to all
Moucadel V, Lopez F, Ara T, Philippe Benech and Gautheret D Moucadel V, Lopez F, Ara T, Philippe Benech and Gautheret D Moucadel V, Lopez F, Ara T, Philippe Benech and Gautheret D Beyond the 3' end: experimental validation of extended transcript isoforms. Beyond the 3' end: experimental validation of extended transcript isoforms Beyond the 3' end: experimental validation of extended transcript isoforms. Nucleic Acids Research,35,6,1947-1957 Nucleic Acids Research,35,6,1947-1957 Nucleic Acids Research,35,6,1947-1957 2007 Refereed English Research paper(scientific journal) Disclose to all
Arifuzzaman M, Maeda M, Itoh A, Nishikata K, Takita C, Saito R, Ara T, Nakahigashi K, Huang HC, Hirai A, Tsuzuki K, Nakamura S, Altaf-Ul-Amin M, Oshima T, Baba T, Yamamoto N, Kawamura T, Ioka-Nakamichi T, Kitagawa M, Tomita M, Kanaya S, Wada C and Mori H Arifuzzaman M, Maeda M, Itoh A, Nishikata K, Takita C, Saito R, Ara T, Nakahigashi K, Huang HC, Hirai A, Tsuzuki K, Nakamura S, Altaf-Ul-Amin M, Oshima T, Baba T, Yamamoto N, Kawamura T, Ioka-Nakamichi T, Kitagawa M, Tomita M, Kanaya S, Wada C and Mori H Arifuzzaman M, Maeda M, Itoh A, Nishikata K, Takita C, Saito R, Ara T, Nakahigashi K, Huang HC, Hirai A, Tsuzuki K, Nakamura S, Altaf-Ul-Amin M, Oshima T, Baba T, Yamamoto N, Kawamura T, Ioka-Nakamichi T, Kitagawa M, Tomita M, Kanaya S, Wada C and Mori H Large-scale identification of protein-protein interaction of Escherichia coli K-12. Large-scale identification of protein-protein interaction of Escherichia coli K-12 Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Research,16,5,686-691 Genome Research,16,5,686-691 Genome Research,16,5,686-691 2006 Refereed English Research paper(scientific journal) Disclose to all
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL and Mori H Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL and Mori H Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL and Mori H Construction of Escherichia coli K-12 in-frame, singlegene knockout mutants: the Keio collection. Construction of Escherichia coli K-12 in-frame, singlegene knockout mutants: the Keio collection Construction of Escherichia coli K-12 in-frame, singlegene knockout mutants: the Keio collection. Mol. Sys. Biol.,2 Mol. Sys. Biol.,2 Mol. Sys. Biol.,2 2006 Refereed English Research paper(scientific journal) Disclose to all
Ara T, Lopez F, Ritchie W, Benech P and Gautheret D Ara T, Lopez F, Ritchie W, Benech P and Gautheret D Ara T, Lopez F, Ritchie W, Benech P and Gautheret D Conservation of Alternative Polyadenylation Patterns in Mammals. Conservation of Alternative Polyadenylation Patterns in Mammals Conservation of Alternative Polyadenylation Patterns in Mammals. BMC Genomics,7 BMC Genomics,7 BMC Genomics,7 2006 Refereed English Research paper(scientific journal) Disclose to all
Lopez F, Granjeaud S, Ara T, Ghattas B and Gautheret D Lopez F, Granjeaud S, Ara T, Ghattas B and Gautheret D Lopez F, Granjeaud S, Ara T, Ghattas B and Gautheret D The disparate nature of "intergenic" polyadenylation sites. The disparate nature of "intergenic" polyadenylation sites The disparate nature of "intergenic" polyadenylation sites. RNA,12,10,1794-1801 RNA,12,10,1794-1801 RNA,12,10,1794-1801 2006 Refereed English Research paper(scientific journal) Disclose to all
Kitagawa M., Ara T., Arifuzzaman M., Ioka-Nakamichi T., Inamoto E., Toyonaga H., and Mori H Kitagawa M., Ara T., Arifuzzaman M., Ioka-Nakamichi T., Inamoto E., Toyonaga H., and Mori H Kitagawa M., Ara T., Arifuzzaman M., Ioka-Nakamichi T., Inamoto E., Toyonaga H., and Mori H Complete set of ORF clones of Escherichia coli ASKA library (A Complete Set of E. coli K-12 ORF Archive): Unique Resources for Biological Research. Complete set of ORF clones of Escherichia coli ASKA library (A Complete Set of E. coli K-12 ORF Archive): Unique Resources for Biological Research Complete set of ORF clones of Escherichia coli ASKA library (A Complete Set of E. coli K-12 ORF Archive): Unique Resources for Biological Research. DNA Research,12,5,291-299 DNA Research,12,5,291-299 DNA Research,12,5,291-299 2005 Refereed English Research paper(scientific journal) Disclose to all
荒 武、青野英司 荒 武、青野英司 深海微生物の比較ゲノム生物学 深海微生物の比較ゲノム生物学 月刊海洋,411,655-672 月刊海洋,411,655-672 ,411,655-672 2004 Japanese Research paper(scientific journal) Disclose to all
Kawano M., Kanaya S., Oshima T., Masuda Y., Ara T. and Mori H Kawano M., Kanaya S., Oshima T., Masuda Y., Ara T. and Mori H Kawano M., Kanaya S., Oshima T., Masuda Y., Ara T. and Mori H Distribution of repetitive sequences on the leading and lagging strands of the Escherichia coli genome: comparative study of Long Direct Repeat (LDR) sequences. Distribution of repetitive sequences on the leading and lagging strands of the Escherichia coli genome: comparative study of Long Direct Repeat (LDR) sequences Distribution of repetitive sequences on the leading and lagging strands of the Escherichia coli genome: comparative study of Long Direct Repeat (LDR) sequences. DNA Research,9,1,1-10 DNA Research,9,1,1-10 DNA Research,9,1,1-10 2002 Refereed English Research paper(scientific journal) Disclose to all
Yamagishi K., Oshima T., Masuda Y., Ara T., Kanaya S. and Mori H. Yamagishi K., Oshima T., Masuda Y., Ara T., Kanaya S. and Mori H Yamagishi K., Oshima T., Masuda Y., Ara T., Kanaya S. and Mori H. Conservation of translation initiation sites based on dinucleotide frequency and codon usage in Escherichia coli K-12 (W3110): non-random distribution of A/T-rich sequences immediately upstream of the translation initiation codon. Conservation of translation initiation sites based on dinucleotide frequency and codon usage in Escherichia coli K-12 (W3110): non-random distribution of A/T-rich sequences immediately upstream of the translation initiation codon Conservation of translation initiation sites based on dinucleotide frequency and codon usage in Escherichia coli K-12 (W3110): non-random distribution of A/T-rich sequences immediately upstream of the translation initiation codon. DNA Research,9,1,19-24 DNA Research,9,1,19-24 DNA Research,9,1,19-24 2002 Refereed English Research paper(scientific journal) Disclose to all
Murata T., Ohnishi M., Ara T., Kaneko J., Han C. G., Li Y. F., Takashima K., Nojima H., Nakayama K., Kaji A., Kamio Y., Miki T., Mori H., Ohtsubo E., Terawaki Y. and Hayashi T. Murata T., Ohnishi M., Ara T., Kaneko J., Han C. G., Li Y. F., Takashima K., Nojima H., Nakayama K., Kaji A., Kamio Y., Miki T., Mori H., Ohtsubo E., Terawaki Y. and Hayashi T. Murata T., Ohnishi M., Ara T., Kaneko J., Han C. G., Li Y. F., Takashima K., Nojima H., Nakayama K., Kaji A., Kamio Y., Miki T., Mori H., Ohtsubo E., Terawaki Y. and Hayashi T. Complete nucleotide sequence of plasmid Rts1: implications for evolution of large plasmid genomes. Complete nucleotide sequence of plasmid Rts1: implications for evolution of large plasmid genomes Complete nucleotide sequence of plasmid Rts1: implications for evolution of large plasmid genomes. J. Bacteriol.,184,12,3194-3202 J. Bacteriol.,184,12,3194-3202 J. Bacteriol.,184,12,3194-3202 2002 Refereed English Research paper(scientific journal) Disclose to all
Oshima T., Wada C., Kawagoe Y., Ara T., Maeda M., Masuda Y., Hiraga S., and Mori H Oshima T., Wada C., Kawagoe Y., Ara T., Maeda M., Masuda Y., Hiraga S., and Mori H Oshima T., Wada C., Kawagoe Y., Ara T., Maeda M., Masuda Y., Hiraga S., and Mori H Genome-wide analysis of deoxyadenosine methyltransferase-mediated control of gene expression in Escherichia coli. Genome-wide analysis of deoxyadenosine methyltransferase-mediated control of gene expression in Escherichia coli Genome-wide analysis of deoxyadenosine methyltransferase-mediated control of gene expression in Escherichia coli. Mol. Microbiol.,45,3,673-695 Mol. Microbiol.,45,3,673-695 Mol. Microbiol.,45,3,673-695 2002 Refereed English Research paper(scientific journal) Disclose to all
森 浩禎、堀内 嵩、磯野 克己、和田 千恵子、金谷 重彦、北川 正成、荒  武、大島 拓 森 浩禎、堀内 嵩、磯野 克己、和田 千恵子、金谷 重彦、北川 正成、荒  武、大島 拓 大腸菌のポストシーケンスゲノム解析 大腸菌のポストシーケンスゲノム解析 蛋白質核酸酵素,46,1977-1985 蛋白質核酸酵素,46,1977-1985 ,46,1977-1985 2001 Japanese Research paper(scientific journal) Disclose to all
荒 武、旭 浩子、森 浩禎 荒 武、旭 浩子、森 浩禎 大腸菌ゲノムデータベースの構築 大腸菌ゲノムデータベースの構築 Computer Today,101,19-25 Computer Today,101,19-25 ,101,19-25 2001 Japanese Research paper(scientific journal) Disclose to all
ARA Takeshi 荒 武 ARA Takeshi Studies of Adenosine 5'-phosphosulfate Reducing Enzymes in Higher Plants 高等植物のadenosine 5'-phosphosulfateの還元酵素に関する研究 Studies of Adenosine 5'-phosphosulfate Reducing Enzymes in Higher Plants Kyoto University 京都大学 Kyoto University 1998/09 English Doctoral Thesis Disclose to all
Ara T. and Sekiya J Ara T. and Sekiya J Ara T. and Sekiya J Purification and characterization of APS sulfotransferase from spinach leaves Purification and characterization of APS sulfotransferase from spinach leaves Purification and characterization of APS sulfotransferase from spinach leaves Sulphur Metabolism in Higher Plants,177-179 Sulphur Metabolism in Higher Plants,177-179 Sulphur Metabolism in Higher Plants,177-179 1997 Refereed English Research paper(international conference proceedings) Disclose to all
Ara T. and Sekiya J. Ara T. and Sekiya J. Ara T. and Sekiya J. Non-radioactive adenosine 5'-phosphosulfate sulfotransferase assay by coupling with sulfite reductase and O-acetylserine(thiol)lyase. Non-radioactive adenosine 5'-phosphosulfate sulfotransferase assay by coupling with sulfite reductase and O-acetylserine(thiol)lyase Non-radioactive adenosine 5'-phosphosulfate sulfotransferase assay by coupling with sulfite reductase and O-acetylserine(thiol)lyase. Biosci Biotechnol Biochem.,61,4,621-624 Biosci Biotechnol Biochem.,61,4,621-624 Biosci Biotechnol Biochem.,61,4,621-624 1997 Refereed English Research paper(scientific journal) Disclose to all

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Title language:
Books etc
Author Author(Japanese) Author(English) Title Title(Japanese) Title(English) Publisher Publisher(Japanese) Publisher(English) Publication date Language Type Disclose
The Jatropha Genome (分担執筆) The Jatropha Genome (分担執筆) The Jatropha Genome (分担執筆) Springer Springer Springer 2017 English Contributor Disclose to all
バイオデータベースとウェブツールの手とり足とり活用法 第2版(分担執筆) バイオデータベースとウェブツールの手とり足とり活用法 第2版(分担執筆) 羊土社 羊土社 2007 Japanese Disclose to all
ゲノミクス・プロテオミクスの新展開(分担執筆) ゲノミクス・プロテオミクスの新展開(分担執筆) 羊土社 羊土社 2004 Japanese Disclose to all
バイオデータベースとウェブツールの手とり足とり活用法(分担執筆) バイオデータベースとウェブツールの手とり足とり活用法(分担執筆) 羊土社 羊土社 2002 Japanese Disclose to all
Title language:
Teaching subject(s)
Name(Japanese) Name(English) Term Department Period
代謝栄養学特論 Advanced Course of Metabolism and Nutritional Chemistry 後期集中 農学研究科 2017/04-2018/03
食品分子機能学専攻実験1 Experimental Course in Molecular Function of Food1 通年 農学研究科 2017/04-2018/03
食品分子機能学専攻実験2 Experimental Course in Molecular Function of Food2 通年 農学研究科 2017/04-2018/03
食品分子機能学専攻演習1 Seminar in Molecular Function of Food1 通年 農学研究科 2017/04-2018/03
食品分子機能学専攻演習2 Seminar in Molecular Function of Food2 通年 農学研究科 2017/04-2018/03
健康科学特論 Advanced Course of Health Science 後期集中 農学研究科 2018/04-2019/03
食品分子機能学専攻実験1 Experimental Course in Molecular Function of Food1 通年 農学研究科 2018/04-2019/03
食品分子機能学専攻実験2 Experimental Course in Molecular Function of Food2 通年 農学研究科 2018/04-2019/03
食品分子機能学専攻演習1 Seminar in Molecular Function of Food1 通年 農学研究科 2018/04-2019/03
食品分子機能学専攻演習2 Seminar in Molecular Function of Food2 通年 農学研究科 2018/04-2019/03
食品生化学実験及び実験法(II) Laboratory Course in Food Biochemistry (II) 前期 農学部 2018/04-2019/03

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History of staying abroad
Organization Department Research theme Country Period
INSERM TAGC 哺乳類ゲノム比較解析 フランス 2004/04/01-2006/06/30