宮下 直彦

Last Update: 2016/07/01 14:17:52

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Name(Kanji/Kana/Abecedarium Latinum)
宮下 直彦/ミヤシタ ナオヒコ/Naohiko Miyashita
Primary department(Org1/Org2/Org3/Job title)
農学研究科/応用生物科学専攻資源植物科学講座/准教授
Faculty
Org1 Org2 Org3 Job title
農学部
Contact address
Type Address(Japanese) Address(English)
Office 〒606-8502　京都府京都市左京区北白川京大農学部
Phone
Type Number
Office 075-753-6138
E-mail address
メールアドレス
arabis ＠ kais.kyoto-u.ac.jp
Affiliated academic organization(s) (Japanese)
Organization name(Japanese) Organization name(English)
日本遺伝学会
分子生物と進化学会(Society of Molecular Biology and Evolution)
Academic degree
Field(Japanese) Field(English) University(Japanese) University(English) Method
理学修士 九州大学
Ｐｈ．Ｄ． 米国ノ－スカロライナ州立大学
Graduate school
University(Japanese) University(English) Faculty(Japanese) Faculty(English) Major(Japanese) Major(English) Degree
九州大学 大学院理学研究科修士課程生物学専攻 修了
米国ノースカロライナ州立大学 遺伝学科博士課程 修了
University
University(Japanese) University(English) Faculty(Japanese) Faculty(English) Major(s)(Japanese) Major(s)(English) Degree
九州大学 理学部生物学科 卒業
Work Experience
Period Organization(Japanese) Organization(English) Job title(Japanese) Job title(English)
1984/10/01-1985/07/31 米国イェール大学 Yale University ポストドク研究員 Postdoc researcher
1985/08/01-1989/03/31 米国国立衛生研究所環境衛生科学研究所 NIH, NIEHS, USA Research Fellow
1989/41-1989/93/1 九州大学 Kyushu University 学術振興会特別研究員
1989/04/01-1989/09/30 京都大学
Personal Profile
(Japanese)
1978年九州大学理学部生物学科卒業 1981年九州大学理学部修士課程修了 1984年ノースカロライナ州立大学博士課程修了
Research Topics
(Japanese)
集団遺伝学 メタゲノム解析
Overview of your research
(Japanese)
植物の集団遺伝学 土壌微生物のメタゲノム解析
Fields of research (key words)
Key words(Japanese) Key words(English)
遺伝学
植物
集団遺伝学
群集生態学
Fields of research (kaken code)
Kaken code
Heredity/genome dynamics
Ecology/environment
Published Papers > Published Papers
(文系研究者の一般的な論文集への寄稿や単行本の分担執筆などは「著書等」を参照してください)
Authors Title Bibliography Date Peer-Review Language
MIYASHITA Naohiko Contrasting soil bacteria community structure between the phyla Acidobacteria and Proteobacteria in tropical Southeast Asian and temerate Japanese forests Genes and Genetic System,90,61-77 2015 Refereed English
N.T. Miyashita; H. Iwanaga; S. Charles; B. Diway; J. Sabang; L. Chong Soil bacterial community structure in five tropical forests in Malaysia and one temperate forest in Japan revealed by pyrosequencing analyses of 16S rRNA gene sequence variation Genes and Genetic Systems,88,2,93-103 2013 Refereed English
V. Kotseruba; K. Pistrick; F.R. Blattner; K. Kumke; O. Weiss; T. Rutten; J. Fuchs; T. Endo; S. Nasuda; A. Ghukasyan; A. Houben The evolution of the hexaploid grass Zingeria kochii (Mez) Tzvel. (2n = 12) was accompanied by complex hybridization and uniparental loss of ribosomal DNA Molecular Phylogenetics and Evolution,56,1,146-155 2010/07 Refereed English
M. Sakata; S. Nasuda; T.R. Endo Dissection of barley chromosome 4H in common wheat by the gametocidal system and cytological mapping of chromosome 4H with EST markers Genes and Genetic Systems,85,1,19-29 2010/02 Refereed English
Y.P. Gyawali; S. Nasuda; T.R. Endo A cytological map of the short arm of rye chromosome 1R constructed with 1R dissection stocks of common wheat and PCR-based markers Cytogenetic and Genome Research,129,1-3,224-233 2010 Refereed English
K. Yoshida; N.T. Miyashita DNA polymorphism in the blast disease resistancegene Pita of the wild rice Oryza rufipogonand its related species Genes and Genetic Systems,84,2,121-136 2009/04 Refereed English
C. Teranishi; K. Yoshida; N.T. Miyashita DNA polymorphism in the SUPERWOMAN1 (SPW1) locus of the wild rice oryza rufipogon and its related species Genes and Genetic Systems,83,5,403-415 2008/10 Refereed English
S. Rakshit; A. Rakshit; H. Matsumura; Y. Takahashi; Y. Hasegawa; A. Ito; T. Ishii; N.T. Miyashita; R. Terauchi Large-scale DNA polymorphism study of Oryza sativa and O. rufipogon reveals the origin and divergence of Asian rice Theoretical and Applied Genetics,114,4,731-743 2007 Refereed English
N.T. Miyashita; K. Yoshida; T. Ishii DNA variation in the metallothionein genes in wild rice Oryza rufipogon: Relationship between DNA sequence polymorphism, codon bias and gene expression Genes and Genetic Systems,80,3,173-183 2005 Refereed English
K. Yoshida; N.T. Miyashita Nucleotide polymorphism in the Adh2 region of the wild rice Oryza rufipogon Theoretical and Applied Genetics,111,6,1215-1228 2005 Refereed English
Y. Ogihara; Y. Yamazaki; K. Murai; A. Kanno; T. Terachi; T. Shiina; N. Miyashita; S. Nasuda; C. Nakamura; N. Mori; S. Takumi; M. Murata; S. Futo; K. Tsunewaki Structural dynamics of cereal mitochondrial genomes as revealed by complete nucleotide sequencing of the wheat mitochondrial genome Nucleic Acids Research,33,19,6235-6250 2005 Refereed English
K. Yoshida; N.T. Miyashita; T. Ishii Nucleotide polymorphism in the Adh1 locus region of the wild rice Oryza rufipogon Theoretical and Applied Genetics,109,7,1406-1416 2004/11 Refereed English
A. Kawabe; N.T. Miyashita Patterns of codon usage bias in three dicot and four monocot plant species Genes and Genetic Systems,78,5,343-352 2003/10 Refereed English
A. Kawabe; N.T. Miyashita DNA polymorphism in active gene and pseudogene of the cytosolic phosphoglucose isomerase (PgiC) loci in Arabidopsis halleri ssp. gemmifera Molecular Biology and Evolution,20,7,1043-1050 2003/07 Refereed English
N.T. Miyashita Trimorphic DNA variation in the receptor-like protein kinase gene in the F18L15-130 region of the wild plant Arabidopsis thaliana Genes and Genetic Systems,78,3,221-227 2003/06 Refereed English
K. Yoshida; T. Kamiya; A. Kawabe; N.T. Miyashita DNA polymorphism at the ACAULIS5 locus of the wild plant Arabidopsis thaliana Genes and Genetic Systems,78,1,11-21 2003/02 Refereed English
T. Kamiya; A. Kawabe; N.T. Miyashita Nucleotide polymorphism at the Atmyb2 locus of the wild plant Arabidopsis thaliana Genetical Research,80,2,89-98 2002/10 Refereed English
A. Kawabe; N.T. Miyashita Characterization of duplicated two cytosolic phosphoglucose isomerase (PgiC) loci in Arabidopsis halleri ssp. gemmifera Genes and Genetic Systems,77,3,159-165 2002/06 Refereed English
A. Kawabe; N.T. Miyashita DNA variation in the acidic chitinase locus (ChiA) region in Arabis gemmifera and its related species Genes and Genetic Systems,77,3,167-175 2002/06 Refereed English
N.T. Miyashita DNA variation in the 5′ upstream region of the Adh locus of the wild plants Arabidopsis thaliana and Arabis gemmifera Molecular Biology and Evolution,18,2,164-171 2001/02 Refereed English
A. Kawabe; K. Yamane; N.T. Miyashita DNA polymorphism at the cytosolic phosphoglucose isomerase (PgiC) locus of the wild plant Arabidopsis thaliana Genetics,156,3,1339-1347 2000/11 Refereed English
A. Kawabe; N.T. Miyashita DNA variation in the basic chitinase locus (ChiB) region of the wild plant Arabidopsis thaliana Genetics,153,3,1445-1453 1999/11 Refereed English
N.T. Miyashita; A. Kawabe; H. Innan DNA variation in the wild plant Arabidopsis thaliana revealed by amplified fragment length polymorphism analysis Genetics,152,4,1723-1731 1999/08 Refereed English
N.T. Miyashita; A. Kawabe; H. Innan; R. Terauchi Intra- and interspecific DNA variation and codon bias of the alcohol dehydrogenase (Adh) locus in Arabis and Arabidopsis species Molecular Biology and Evolution,15,11,1420-1429 1998/11 Refereed English
T. Sasanuma; N.T. Miyashita Subfamily divergence in the multigene family of ribulose-1,5-bisphosphate carboxylase/oxygenase (rbcS) in Triticeae and its relatives Genes and Genetic Systems,73,5,297-309 1998/10 Refereed English
R. Terauchi; T. Terachi; N.T. Miyashita DNA polymorphism at the Pgi locus of a wild yam, Dioscorea tokoro Genetics,147,4,1899-1914 1997/12 Refereed English
A. Kawabe; H. Innan; R. Terauchi; N.T. Miyashita Nucleotide polymorphism in the acidic chitinase locus (ChiA) region of the wild plant Arabidopsis thaliana Molecular Biology and Evolution,14,12,1303-1315 1997/12 Refereed English
A. Kawabe; N.T. Miyashita; R. Terauchi Phylogenetic relationship among the section Stenophora in the genus Dioscorea based on the analysis of nucleotide sequence variation in the phosphoglucose isomerase (Pgi) locus Genes and Genetic Systems,72,5,253-262 1997/10 Refereed English
H. Innan; R. Terauchi; N.T. Miyashita Microsatellite polymorphism in natural populations of the wild plant Arabidopsis thaliana Genetics,146,4,1441-1452 1997/08 Refereed English
N. Mori; N.T. Miyashita; T. Terachi; C. Nakamura Variation in coxII intron in the wild ancestral species of wheat Hereditas,126,3,281-288 1997 Refereed English
T. Ohsako; G.-Z. Wang; N.T. Miyashita Polymerase chain reaction-single strand conformational polymorphism analysis of intra- and interspecific variations in organellar DNA regions of Aegilops mutica and related species Genes and Genetic Systems,71,5,281-292 1996/10 Refereed English
H. Innan; F. Tajima; R. Terauchi; N.T. Miyashita Intragenic recombination in the Adh locus of the wild plant Arabidopsis thaliana Genetics,143,4,1761-1770 1996/08 Refereed English
T. Sasanuma; N.T. Miyashita; K. Tsunewaki Wheat phylogeny determined by RFLP analysis of nuclear DNA. 3. Intra- and interspecific variations of five Aegilops Sitopsis species Theoretical and Applied Genetics,92,8,928-934 1996/06 Refereed English
N.T. Miyashita; H. Innan; R. Terauchi Intra- and interspecific variation of the alcohol dehydrogenase locus region in wild plants Arabis gemmifera and Arabidopsis thaliana. Molecular biology and evolution,13,2,433-436 1996/02 Refereed English
ZHENG, JY; IRIFUNE, K; MIYASHITA, N; TERAUCHI, R; UCHIYAMA, H; NAKATA, M; TANAKA, R; MORIKAWA, H PHYLOGENETIC-RELATIONSHIPS BETWEEN 6 SPECIES OF PHASEOLUS AND VIGNA AS DETERMINED BY RFLP ANALYSIS OF RIBOSOMAL DNA JAPANESE JOURNAL OF GENETICS,70,5,615-625 1995/10 Refereed English
H. Innan; R. Terauchi; N.T. Miyashita; K. Tsunewaki DNA fingerprinting study on the intraspecific variation and the origin of Prunus yedoensis (Someiyoshino) Japanese Journal of Genetics,70,2,185-196 1995/04 Refereed English
N.T. Miyashita; N. Mori; K. Tsunewaki Molecular variation in chloroplast DNA regions in ancestral species of wheat Genetics,137,3,883-889 1994/07 Refereed English
N.T. Miyashita; C.H. Langley Restriction map polymorphism in the forked and vermilion regions of Drosophila melanogaster Japanese Journal of Genetics,69,3,297-305 1994/06 Refereed English
F. Tajima; T. Tokunaga; N.T. Miyashita Statistical methods for estimating the effective number of alleles, expected heterozygosity and genetic distance in self-incompatibility locus Japanese Journal of Genetics,69,3,287-295 1994 Refereed English
宮下 直彦 Statistical method for estimating the effective unmber of alleles, expected heterozygosity and genetic distance in self in compatibility locus. Jpn. J. Genet.,69/,297-305 1994 Refereed English
N.T. Miyashita; M. Aguade; C.H. Langley Linkage disequilibrium in the white locus region of Drosophila melanogaster Genetical Research,62,2,101-109 1993/10 Refereed English
J.M. Martin-Campos; J.M. Comeron; N. Miyashita; M. Aguade Intraspecific and interspecific variation at the y-ac-sc region of Drosophila simulans and Drosophila melanogaster Genetics,130,4,805-816 1992/04 Refereed English
宮下 直彦 Polymorphism and divergence in the mst355 male accessory gland gene region Genetics,132,755-770 1992 Refereed English
M. Aguade; N. Miyashita; C.H. Langley Polymorphism and divergence in the Mst26A male accessory gland gene region in Drosophila Genetics,132,3,755-770 1992 Refereed English
N.T. Miyashita Molecular and phenotypic variation of the Zw locus region in Drosophila melanogaster Genetics,125,2,407-419 1990/06 Refereed English
宮下 直彦 Molecular analysis of the alleles of alcohol dehydrogenase along cline in Drosophila melanogaster I, Maine NC. and Flouda. Evolution,43 1989 Refereed English
宮下 直彦 Reduced variation in the yellow-achete-scute region in natural population of Drosophila meanogaster. Genetics, 1989 Refereed English
宮下 直彦 Restriction map variation at the zeste-tko region in natural populations of Drosophila melanogaster. Mol. Biol. Ecol.,6 1989 Refereed English
宮下 直彦 Naturally occurring variation in the restriction map of Amy region of Drosophila melanogaster. Genetics,119 1988 Refereed English
宮下 直彦 Molecular and phenotypic Variation of the white locus region in Drosophila melanogaster. Genetics,119 1988 Refereed English
宮下 直彦 Developmental variation in Effects of the Second & third chromosomes on the activities of G6PD and 6PGD in Drosophila melanogaster Biochem. Genet, 1986 Refereed English
宮下 直彦 Quantitative analysis of X chromosome effects on the activities of the G6PD and 6PGD of Drosophila melanogaster. Genetics,113 1986 Refereed English
宮下 直彦 Genetical analysis of chromosomal interaction effects on the activities of G6PD & 6PGD in Drosophila melanogaster. Genetics, 1984 Refereed English

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Conference Presentation > Conference Presentation
(文系研究者の一般的な学会報告の業績は「講演等」を参照してください)
Authors Title Bibliography Date Peer-Review Language
宮下直彦 熱帯林土壌微生物のメタゲノム解析による生態系劣化評価 のための指標微生物・指標遺伝子の探索 日本熱帯生態学会20回大会 2010 Refereed Japanese
宮下直彦 メタゲノム解析によるマレーシア熱帯雨林と劣化林における 土壌微生物の多様性と機能の解明 日本遺伝学会82回大会 2010 Refereed Japanese
宮下 直彦 Mitochondrial genome and genes of common wheat, Triticum aestivum cv. Chinese Spring. Proc. 10th Int. Wheat Genet. Symp.,3, 1020-1022 2003 Refereed English
宮下 直彦 The molecular evolution of the multigene family of the small subnit of ribulose-1,5-bisplosplate carboxylase/oxylase(rbcS)in Triticum and its relatives Proc. 9th Int. What Symp. Saskatoon, Saskachewan, Canada,3/,52-54 1998 Refereed English
Wang, GZ; Miyashita, NT; Tsunewaki, K Plasmon analyses of Triticum (wheat) and Aegilops: PCR single-strand conformational polymorphism (PCR-SSCP) analyses of organellar DNAs PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,94,26,14570-14577 1997/12/23 Refereed English
宮下 直彦 DNA polymorphsm and evolutionary history of the Pgi locus in Dioscorea Tokolo, a wild yam. Current topics on molecular evolution The Pennsylvania State University, 1996 Refereed English
C.H. Langley; J. Macdonald; N. Miyashita; M. Aguadé Lack of correlation between interspecific divergence and intraspecific polymorphism at the suppressor of forked region in Drosophila melanogaster and Drosophila simulans Proceedings of the National Academy of Sciences of the United States of America,90,5,1800-1803 1993/03/01 Refereed English
宮下 直彦 Molecular population genetics of chloroplast genes in ancestral species of wheat Proc. 8th Int. Wheat Symp. Beijing, 1993 Refereed English
宮下 直彦 Use of RFLP analyses for wheat germplasm evolution, in Biodiversify and Wheat Improvement. John Wiley and Sons,17-31 1993 Refereed English
Lectures > Invited Lectures
(文系研究者の一般的な学会報告はこの項に収録されております)
Title Conference name Organization name Date Language
Metagenomics analysis on soil microorganisms in the South East Asia 3rd GEN Network International Seminar Sustainable Bio- Resources for Global Welfare 2010 English
Non-external, competitive funds or grants other than grants-in-aid for Scientific research (kaken)
System Main person Title(Japanese) Title(English) Period
コムギ祖先野生種の分子集団遺伝学 Molecular Population Genetics of wild ancestral species of wheat -
シロイヌナズナとアブラナ科ハタザオ属植物の分子集団遺伝学 Molecular population genetics of the genera Arabis and Arabidopsis -
イネ属植物の分子集団遺伝学 Molecular Population Geuetics of genus Oryza -
Teaching subject(s)
Name(Japanese) Name(English) Term Department Period
遺伝学II 後期 農学部 2011/04-2012/03
資源植物科学演習 通年 農学部 2011/04-2012/03
植物遺伝学専攻実験 農学研究科 2011/04-2012/03
植物遺伝学専攻演習 農学研究科 2011/04-2012/03
遺伝学特論Ⅱ 農学研究科 2011/04-2012/03
資源植物科学演習 Seminar in Plant Resource Science 通年 農学部 2012/04-2013/03
遺伝学II Genetics II 後期 農学部 2012/04-2013/03
資源生物科学専門外書講義Ｉ Introduction to Foreign Literature in Bioresource Science I 前期 農学部 2013/04-2014/03
資源生物科学専門外書講義Ｉ Introduction to Foreign Literature in Bioresource Science I 後期 農学部 2013/04-2014/03
遺伝学II Genetics II 後期 農学部 2013/04-2014/03
資源植物科学演習 Seminar in Plant Resource Science 通年 農学部 2013/04-2014/03
遺伝学特論 II Advanced Genetics II 前期 農学研究科 2013/04-2014/03
植物遺伝学専攻演習 Seminar in Plant Genetics 通年 農学研究科 2013/04-2014/03
植物遺伝学専攻実験 Research in Plant Genetics 通年 農学研究科 2013/04-2014/03
資源生物科学概論A Outline of Bioresource Science A 前期 農学部 2014/04-2015/03
遺伝学 Genetics 前期 農学部 2014/04-2015/03
遺伝学II Genetics II 後期 農学部 2014/04-2015/03
資源植物科学演習 Seminar in Plant Resource Science 通年 農学部 2014/04-2015/03
植物遺伝学専攻演習 Seminar in Plant Genetics 通年 農学研究科 2014/04-2015/03
植物遺伝学専攻実験 Research in Plant Genetics 通年 農学研究科 2014/04-2015/03
植物遺伝学専攻実験１ Research in Plant Genetics1 通年 農学研究科 2015/04-2016/03
植物遺伝学専攻実験 Research in Plant Genetics 通年 農学研究科 2015/04-2016/03
植物遺伝学専攻演習１ Seminar in Plant Genetics1 通年 農学研究科 2015/04-2016/03
植物遺伝学専攻演習 Seminar in Plant Genetics 通年 農学研究科 2015/04-2016/03
資源植物科学演習 Seminar in Plant Resource Science 通年 農学部 2015/04-2016/03
資源生物科学概論A Outline of Bioresource Science A 前期 農学部 2015/04-2016/03
遺伝学Ｉ Genetics I 前期 農学部 2015/04-2016/03
遺伝学II Genetics II 後期 農学部 2015/04-2016/03
遺伝学特論 II Advanced Genetics II 前期 農学研究科 2015/04-2016/03
植物遺伝学専攻実験１ Research in Plant Genetics1 通年 農学研究科 2016/04-2017/03
植物遺伝学専攻実験２ Research in Plant Genetics2 通年 農学研究科 2016/04-2017/03
植物遺伝学専攻実験 Research in Plant Genetics 通年 農学研究科 2016/04-2017/03
植物遺伝学専攻演習１ Seminar in Plant Genetics1 通年 農学研究科 2016/04-2017/03
植物遺伝学専攻演習２ Seminar in Plant Genetics2 通年 農学研究科 2016/04-2017/03
植物遺伝学専攻演習 Seminar in Plant Genetics 通年 農学研究科 2016/04-2017/03
資源植物科学演習 Seminar in Plant Resource Science 通年 農学部 2016/04-2017/03
資源生物科学概論A Outline of Bioresource Science A 前期 農学部 2016/04-2017/03
遺伝学II Genetics II 後期 農学部 2016/04-2017/03

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School management (title, position)
Title Period
附属図書館選書小委員会 委員 2014/06/01-2015/05/31
Faculty management (title, position)
Title Period
図書委員会　委員 2014/04/01-2016/03/31

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