Fan Zhang, Jianshen Zhu, Rachaya Chiewvanichakorn, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu |
Fan Zhang, Jianshen Zhu, Rachaya Chiewvanichakorn, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu |
Fan Zhang, Jianshen Zhu, Rachaya Chiewvanichakorn, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu |
A New Integer Linear Programming Formulation to the Inverse QSAR/QSPR for Acyclic Chemical Compounds Using Skeleton Trees.  |
A New Integer Linear Programming Formulation to the Inverse QSAR/QSPR for Acyclic Chemical Compounds Using Skeleton Trees.  |
A New Integer Linear Programming Formulation to the Inverse QSAR/QSPR for Acyclic Chemical Compounds Using Skeleton Trees.  |
Proc. 33rd International Conference on Industrial, Engineering and Other Applications of Applied Intelligent Systems (IEA/AIE 2020), 433-444 |
Proc. 33rd International Conference on Industrial, Engineering and Other Applications of Applied Intelligent Systems (IEA/AIE 2020), 433-444 |
Proc. 33rd International Conference on Industrial, Engineering and Other Applications of Applied Intelligent Systems (IEA/AIE 2020), 433-444 |
2020/09 |
Refereed |
|
Research paper(international conference proceedings) |
Disclose to all |
Zhen Chen 0009, Pei Zhao, Fuyi Li, Yanan Wang, Alexander Ian Smith, Geoffrey I. Webb, Tatsuya Akutsu, Abdelkader Baggag, Halima Bensmail, Jiangning Song |
Zhen Chen 0009, Pei Zhao, Fuyi Li, Yanan Wang, Alexander Ian Smith, Geoffrey I. Webb, Tatsuya Akutsu, Abdelkader Baggag, Halima Bensmail, Jiangning Song |
Zhen Chen 0009, Pei Zhao, Fuyi Li, Yanan Wang, Alexander Ian Smith, Geoffrey I. Webb, Tatsuya Akutsu, Abdelkader Baggag, Halima Bensmail, Jiangning Song |
Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences. |
Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences. |
Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences. |
Briefings Bioinform., 21, 5, 1676-1696 |
Briefings Bioinform., 21, 5, 1676-1696 |
Briefings Bioinform., 21, 5, 1676-1696 |
2020/09 |
Refereed |
|
Research paper(scientific journal) |
Disclose to all |
Weifeng Guo, Shaowu Zhang 0001, Tao Zeng, Tatsuya Akutsu, Luonan Chen |
Weifeng Guo, Shaowu Zhang 0001, Tao Zeng, Tatsuya Akutsu, Luonan Chen |
Weifeng Guo, Shaowu Zhang 0001, Tao Zeng, Tatsuya Akutsu, Luonan Chen |
Network control principles for identifying personalized driver genes in cancer. |
Network control principles for identifying personalized driver genes in cancer. |
Network control principles for identifying personalized driver genes in cancer. |
Briefings Bioinform., 21, 5, 1641-1662 |
Briefings Bioinform., 21, 5, 1641-1662 |
Briefings Bioinform., 21, 5, 1641-1662 |
2020/09 |
Refereed |
|
Research paper(scientific journal) |
Disclose to all |
Wang F, Akutsu T, Mori T |
Wang F, Akutsu T, Mori T |
Wang F, Akutsu T, Mori T |
Comparison of pseudoknotted RNA secondary structures by topological centroid identification and tree edit distance |
Comparison of pseudoknotted RNA secondary structures by topological centroid identification and tree edit distance |
Comparison of pseudoknotted RNA secondary structures by topological centroid identification and tree edit distance |
Journal of Computational Biology, 27, 1-9 |
Journal of Computational Biology, 27, 1-9 |
Journal of Computational Biology, 27, 1-9 |
2020/09 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Shutao Mei, Fuyi Li, André Leier, Tatiana T. Marquez-Lago, Kailin Giam, Nathan P. Croft, Tatsuya Akutsu, Alexander Ian Smith, Jian Li, Jamie Rossjohn, Anthony W. Purcell, Jiangning Song |
Shutao Mei, Fuyi Li, André Leier, Tatiana T. Marquez-Lago, Kailin Giam, Nathan P. Croft, Tatsuya Akutsu, Alexander Ian Smith, Jian Li, Jamie Rossjohn, Anthony W. Purcell, Jiangning Song |
Shutao Mei, Fuyi Li, André Leier, Tatiana T. Marquez-Lago, Kailin Giam, Nathan P. Croft, Tatsuya Akutsu, Alexander Ian Smith, Jian Li, Jamie Rossjohn, Anthony W. Purcell, Jiangning Song |
A comprehensive review and performance evaluation of bioinformatics tools for HLA class I peptide-binding prediction. |
A comprehensive review and performance evaluation of bioinformatics tools for HLA class I peptide-binding prediction. |
A comprehensive review and performance evaluation of bioinformatics tools for HLA class I peptide-binding prediction. |
Briefings Bioinform., 21, 4, 1119-1135 |
Briefings Bioinform., 21, 4, 1119-1135 |
Briefings Bioinform., 21, 4, 1119-1135 |
2020/07 |
Refereed |
|
Research paper(scientific journal) |
Disclose to all |
Pengyu Liu, Avraham A. Melkman, Tatsuya Akutsu |
Pengyu Liu, Avraham A. Melkman, Tatsuya Akutsu |
Pengyu Liu, Avraham A. Melkman, Tatsuya Akutsu |
Extracting boolean and probabilistic rules from trained neural networks.  |
Extracting boolean and probabilistic rules from trained neural networks.  |
Extracting boolean and probabilistic rules from trained neural networks.  |
Neural Networks, 126, 300-311 |
Neural Networks, 126, 300-311 |
Neural Networks, 126, 300-311 |
2020/06 |
Refereed |
|
Research paper(scientific journal) |
Disclose to all |
Zhen Chen 0009, Pei Zhao, Fuyi Li, Tatiana T. Marquez-Lago, André Leier, Jerico Nico De Leon Revote, Yan Zhu, David R. Powell, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Alexander Ian Smith, Roger J. Daly, Jian Li 0052, Jiangning Song |
Zhen Chen 0009, Pei Zhao, Fuyi Li, Tatiana T. Marquez-Lago, André Leier, Jerico Nico De Leon Revote, Yan Zhu, David R. Powell, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Alexander Ian Smith, Roger J. Daly, Jian Li 0052, Jiangning Song |
Zhen Chen 0009, Pei Zhao, Fuyi Li, Tatiana T. Marquez-Lago, André Leier, Jerico Nico De Leon Revote, Yan Zhu, David R. Powell, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Alexander Ian Smith, Roger J. Daly, Jian Li 0052, Jiangning Song |
iLearn : an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data. |
iLearn : an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data. |
iLearn : an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data. |
Briefings Bioinform., 21, 3, 1047-1057 |
Briefings Bioinform., 21, 3, 1047-1057 |
Briefings Bioinform., 21, 3, 1047-1057 |
2020/05 |
Refereed |
|
Research paper(scientific journal) |
Disclose to all |
Jianshen Zhu, Chenxi Wang, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu |
Jianshen Zhu, Chenxi Wang, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu |
Jianshen Zhu, Chenxi Wang, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu |
A Novel Method for Inference of Chemical Compounds of Cycle Index Two with Desired Properties Based on Artificial Neural Networks and Integer Programming. |
A Novel Method for Inference of Chemical Compounds of Cycle Index Two with Desired Properties Based on Artificial Neural Networks and Integer Programming. |
A Novel Method for Inference of Chemical Compounds of Cycle Index Two with Desired Properties Based on Artificial Neural Networks and Integer Programming. |
Algorithms, 13, 5, 124-124 |
Algorithms, 13, 5, 124-124 |
Algorithms, 13, 5, 124-124 |
2020/05 |
Refereed |
|
Research paper(scientific journal) |
Disclose to all |
Fuyi Li, André Leier, Quanzhong Liu, Yanan Wang, Dongxu Xiang, Tatsuya Akutsu, Geoffrey I. Webb, Alexander Ian Smith, Tatiana T. Marquez-Lago, Jian Li 0052, Jiangning Song |
Fuyi Li, André Leier, Quanzhong Liu, Yanan Wang, Dongxu Xiang, Tatsuya Akutsu, Geoffrey I. Webb, Alexander Ian Smith, Tatiana T. Marquez-Lago, Jian Li 0052, Jiangning Song |
Fuyi Li, André Leier, Quanzhong Liu, Yanan Wang, Dongxu Xiang, Tatsuya Akutsu, Geoffrey I. Webb, Alexander Ian Smith, Tatiana T. Marquez-Lago, Jian Li 0052, Jiangning Song |
Procleave: Predicting Protease-specific Substrate Cleavage Sites by Combining Sequence and Structural Information. |
Procleave: Predicting Protease-specific Substrate Cleavage Sites by Combining Sequence and Structural Information. |
Procleave: Predicting Protease-specific Substrate Cleavage Sites by Combining Sequence and Structural Information. |
Genom. Proteom. Bioinform., 18, 1, 52-64 |
Genom. Proteom. Bioinform., 18, 1, 52-64 |
Genom. Proteom. Bioinform., 18, 1, 52-64 |
2020/02 |
Refereed |
|
Research paper(scientific journal) |
Disclose to all |
Naveed Azam, Rachaya Chiewvanichakorn, Fan Zhang, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu |
|
Naveed Azam, Rachaya Chiewvanichakorn, Fan Zhang, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu |
A Novel Method for the Inverse QSAR/QSPR based on Artificial Neural Networks and Mixed Integer Linear Programming with Guaranteed Admissibility |
A Novel Method for the Inverse QSAR/QSPR based on Artificial Neural Networks and Mixed Integer Linear Programming with Guaranteed Admissibility |
A Novel Method for the Inverse QSAR/QSPR based on Artificial Neural Networks and Mixed Integer Linear Programming with Guaranteed Admissibility |
Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies, 101-108 |
Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies, 101-108 |
Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies, 101-108 |
2020/02 |
Refereed |
|
Research paper(international conference proceedings) |
Disclose to all |
Fuyi Li, Jinxiang Chen, André Leier, Tatiana T. Marquez-Lago, Quanzhong Liu, Yanze Wang, Jerico Nico De Leon Revote, Alexander Ian Smith, Tatsuya Akutsu, Geoffrey I. Webb, Lukasz A. Kurgan, Jiangning Song |
Fuyi Li, Jinxiang Chen, André Leier, Tatiana T. Marquez-Lago, Quanzhong Liu, Yanze Wang, Jerico Nico De Leon Revote, Alexander Ian Smith, Tatsuya Akutsu, Geoffrey I. Webb, Lukasz A. Kurgan, Jiangning Song |
Fuyi Li, Jinxiang Chen, André Leier, Tatiana T. Marquez-Lago, Quanzhong Liu, Yanze Wang, Jerico Nico De Leon Revote, Alexander Ian Smith, Tatsuya Akutsu, Geoffrey I. Webb, Lukasz A. Kurgan, Jiangning Song |
DeepCleave: a deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites. |
DeepCleave: a deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites. |
DeepCleave: a deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites. |
Bioinform., 36, 4, 1057-1065 |
Bioinform., 36, 4, 1057-1065 |
Bioinform., 36, 4, 1057-1065 |
2020/02 |
Refereed |
|
Research paper(scientific journal) |
Disclose to all |
Yanju Zhang, Sha Yu, Ruopeng Xie, Jiahui Li, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Alexander Ian Smith, Zongyuan Ge, Jiawei Wang, Trevor Lithgow, Jiangning Song |
Yanju Zhang, Sha Yu, Ruopeng Xie, Jiahui Li, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Alexander Ian Smith, Zongyuan Ge, Jiawei Wang, Trevor Lithgow, Jiangning Song |
Yanju Zhang, Sha Yu, Ruopeng Xie, Jiahui Li, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Alexander Ian Smith, Zongyuan Ge, Jiawei Wang, Trevor Lithgow, Jiangning Song |
PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins. |
PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins. |
PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins. |
Bioinform., 36, 3, 704-712 |
Bioinform., 36, 3, 704-712 |
Bioinform., 36, 3, 704-712 |
2020/02 |
Refereed |
|
Research paper(scientific journal) |
Disclose to all |
Rachaya Chiewvanichakorn, Chenxi Wang, Zhe Zhang, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu |
Rachaya Chiewvanichakorn, Chenxi Wang, Zhe Zhang, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu |
Rachaya Chiewvanichakorn, Chenxi Wang, Zhe Zhang, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu |
A Method for the Inverse QSAR/QSPR Based on Artificial Neural Networks and Mixed Integer Linear Programming |
A Method for the Inverse QSAR/QSPR Based on Artificial Neural Networks and Mixed Integer Linear Programming |
A Method for the Inverse QSAR/QSPR Based on Artificial Neural Networks and Mixed Integer Linear Programming |
Proceedings of the 2020 10th International Conference on Bioscience, Biochemistry and Bioinformatics |
Proceedings of the 2020 10th International Conference on Bioscience, Biochemistry and Bioinformatics |
Proceedings of the 2020 10th International Conference on Bioscience, Biochemistry and Bioinformatics |
2020/01/19 |
Refereed |
|
Research paper(international conference proceedings) |
Disclose to all |
Shogo Nakashima, Jose C Nacher, Jiangning Song, Tatsuya Akutsu |
Shogo Nakashima, Jose C Nacher, Jiangning Song, Tatsuya Akutsu |
Shogo Nakashima, Jose C Nacher, Jiangning Song, Tatsuya Akutsu |
An Overview of Bioinformatics Methods for Analyzing Autism Spectrum Disorders. |
An Overview of Bioinformatics Methods for Analyzing Autism Spectrum Disorders. |
An Overview of Bioinformatics Methods for Analyzing Autism Spectrum Disorders. |
Current pharmaceutical design, 25, 43, 4552-4559 |
Current pharmaceutical design, 25, 43, 4552-4559 |
Current pharmaceutical design, 25, 43, 4552-4559 |
2020 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Tatsuya Akutsu, Avraham A. Melkman, Takeyuki Tamura |
Tatsuya Akutsu, Avraham A. Melkman, Takeyuki Tamura |
Tatsuya Akutsu, Avraham A. Melkman, Takeyuki Tamura |
Improved Hardness of Maximum Common Subgraph Problems on Labeled Graphs of Bounded Treewidth and Bounded Degree. |
Improved Hardness of Maximum Common Subgraph Problems on Labeled Graphs of Bounded Treewidth and Bounded Degree. |
Improved Hardness of Maximum Common Subgraph Problems on Labeled Graphs of Bounded Treewidth and Bounded Degree. |
Int. J. Found. Comput. Sci., 31, 2, 253-273 |
Int. J. Found. Comput. Sci., 31, 2, 253-273 |
Int. J. Found. Comput. Sci., 31, 2, 253-273 |
2020 |
Refereed |
|
Research paper(scientific journal) |
Disclose to all |
Saori Itami-Matsumoto, Michiyo Hayakawa, Sawako Uchida-Kobayashi, Masaru Enomoto, Akihiro Tamori, Kazuyuki Mizuno, Hidenori Toyoda, Takeyuki Tamura, Tatsuya Akutsu, Takahiro Ochiya, Norifumi Kawada, Yoshiki Murakami |
Saori Itami-Matsumoto, Michiyo Hayakawa, Sawako Uchida-Kobayashi, Masaru Enomoto, Akihiro Tamori, Kazuyuki Mizuno, Hidenori Toyoda, Takeyuki Tamura, Tatsuya Akutsu, Takahiro Ochiya, Norifumi Kawada, Yoshiki Murakami |
Saori Itami-Matsumoto, Michiyo Hayakawa, Sawako Uchida-Kobayashi, Masaru Enomoto, Akihiro Tamori, Kazuyuki Mizuno, Hidenori Toyoda, Takeyuki Tamura, Tatsuya Akutsu, Takahiro Ochiya, Norifumi Kawada, Yoshiki Murakami |
Circulating Exosomal miRNA Profiles Predict the Occurrence and Recurrence of Hepatocellular Carcinoma in Patients with Direct-Acting Antiviral-Induced Sustained Viral Response. |
Circulating Exosomal miRNA Profiles Predict the Occurrence and Recurrence of Hepatocellular Carcinoma in Patients with Direct-Acting Antiviral-Induced Sustained Viral Response. |
Circulating Exosomal miRNA Profiles Predict the Occurrence and Recurrence of Hepatocellular Carcinoma in Patients with Direct-Acting Antiviral-Induced Sustained Viral Response. |
Biomedicines, 7, 4 |
Biomedicines, 7, 4 |
Biomedicines, 7, 4 |
2019/11/03 |
Refereed |
English |
|
Disclose to all |
Akutsu T, Melkman AA |
Akutsu T, Melkman AA |
Akutsu T, Melkman AA |
Identification of the Structure of a Probabilistic Boolean Network From Samples Including Frequencies of Outcomes. |
Identification of the Structure of a Probabilistic Boolean Network From Samples Including Frequencies of Outcomes. |
Identification of the Structure of a Probabilistic Boolean Network From Samples Including Frequencies of Outcomes. |
IEEE transactions on neural networks and learning systems, 30, 8, 2383-2396 |
IEEE transactions on neural networks and learning systems, 30, 8, 2383-2396 |
IEEE transactions on neural networks and learning systems, 30, 8, 2383-2396 |
2019/08 |
Refereed |
|
|
Disclose to all |
Matsubara T, Ochiai T, Hayashida M, Akutsu T, Nacher JC |
Matsubara T, Ochiai T, Hayashida M, Akutsu T, Nacher JC |
Matsubara T, Ochiai T, Hayashida M, Akutsu T, Nacher JC |
Convolutional neural network approach to lung cancer classification integrating protein interaction network and gene expression profiles. |
Convolutional neural network approach to lung cancer classification integrating protein interaction network and gene expression profiles. |
Convolutional neural network approach to lung cancer classification integrating protein interaction network and gene expression profiles. |
Journal of bioinformatics and computational biology, 17, 3, 1940007 |
Journal of bioinformatics and computational biology, 17, 3, 1940007 |
Journal of bioinformatics and computational biology, 17, 3, 1940007 |
2019/06 |
Refereed |
|
|
Disclose to all |
Lin CY, Ruan P, Li R, Yang JM, See S, Song J, Akutsu T |
Lin CY, Ruan P, Li R, Yang JM, See S, Song J, Akutsu T |
Lin CY, Ruan P, Li R, Yang JM, See S, Song J, Akutsu T |
Deep learning with evolutionary and genomic profiles for identifying cancer subtypes. |
Deep learning with evolutionary and genomic profiles for identifying cancer subtypes. |
Deep learning with evolutionary and genomic profiles for identifying cancer subtypes. |
Journal of bioinformatics and computational biology, 17, 3, 1940005 |
Journal of bioinformatics and computational biology, 17, 3, 1940005 |
Journal of bioinformatics and computational biology, 17, 3, 1940005 |
2019/06 |
Refereed |
|
|
Disclose to all |
Schwartz JM, Otokuni H, Akutsu T, Nacher JC |
Schwartz JM, Otokuni H, Akutsu T, Nacher JC |
Schwartz JM, Otokuni H, Akutsu T, Nacher JC |
Probabilistic controllability approach to metabolic fluxes in normal and cancer tissues.  |
Probabilistic controllability approach to metabolic fluxes in normal and cancer tissues.  |
Probabilistic controllability approach to metabolic fluxes in normal and cancer tissues.  |
Nature communications, 10, 1, 2725 |
Nature communications, 10, 1, 2725 |
Nature communications, 10, 1, 2725 |
2019/06 |
Refereed |
|
|
Disclose to all |
Hou W, Ruan P, Ching WK, Akutsu T |
Hou W, Ruan P, Ching WK, Akutsu T |
Hou W, Ruan P, Ching WK, Akutsu T |
On the number of driver nodes for controlling a Boolean network when the targets are restricted to attractors. |
On the number of driver nodes for controlling a Boolean network when the targets are restricted to attractors. |
On the number of driver nodes for controlling a Boolean network when the targets are restricted to attractors. |
Journal of theoretical biology, 463, 1-11 |
Journal of theoretical biology, 463, 1-11 |
Journal of theoretical biology, 463, 1-11 |
2019/02 |
Refereed |
|
|
Disclose to all |
Ravindran V, Nacher JC, Akutsu T, Ishitsuka M, Osadcenco A, Sunitha V, Bagler G, Schwartz JM, Robertson DL |
Ravindran V, Nacher JC, Akutsu T, Ishitsuka M, Osadcenco A, Sunitha V, Bagler G, Schwartz JM, Robertson DL |
Ravindran V, Nacher JC, Akutsu T, Ishitsuka M, Osadcenco A, Sunitha V, Bagler G, Schwartz JM, Robertson DL |
Network controllability analysis of intracellular signalling reveals viruses are actively controlling molecular systems.  |
Network controllability analysis of intracellular signalling reveals viruses are actively controlling molecular systems.  |
Network controllability analysis of intracellular signalling reveals viruses are actively controlling molecular systems.  |
Scientific reports, 9, 1, 2066 |
Scientific reports, 9, 1, 2066 |
Scientific reports, 9, 1, 2066 |
2019/02 |
Refereed |
|
|
Disclose to all |
Array,Morihiro Hayashida, Tatsuya Akutsu |
Array,Morihiro Hayashida, Tatsuya Akutsu |
Array,Morihiro Hayashida, Tatsuya Akutsu |
Optimal string clustering based on a Laplace-like mixture and EM algorithm on a set of strings. |
Optimal string clustering based on a Laplace-like mixture and EM algorithm on a set of strings. |
Optimal string clustering based on a Laplace-like mixture and EM algorithm on a set of strings. |
J. Comput. Syst. Sci., 106, 94-128 |
J. Comput. Syst. Sci., 106, 94-128 |
J. Comput. Syst. Sci., 106, 94-128 |
2019 |
Refereed |
|
|
Disclose to all |
Jiawei Wang, Bingjiao Yang, Yi An, Tatiana T. Marquez-Lago, André Leier, Jonathan Wilksch, Qingyang Hong, Yang Zhang 0010, Morihiro Hayashida, Tatsuya Akutsu, Geoffrey I. Webb, Richard A. Strugnell, Jiangning Song, Trevor Lithgow |
Jiawei Wang, Bingjiao Yang, Yi An, Tatiana T. Marquez-Lago, André Leier, Jonathan Wilksch, Qingyang Hong, Yang Zhang 0010, Morihiro Hayashida, Tatsuya Akutsu, Geoffrey I. Webb, Richard A. Strugnell, Jiangning Song, Trevor Lithgow |
Jiawei Wang, Bingjiao Yang, Yi An, Tatiana T. Marquez-Lago, André Leier, Jonathan Wilksch, Qingyang Hong, Yang Zhang 0010, Morihiro Hayashida, Tatsuya Akutsu, Geoffrey I. Webb, Richard A. Strugnell, Jiangning Song, Trevor Lithgow |
Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches. |
Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches. |
Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches. |
Briefings Bioinform., 20, 3, 931-951 |
Briefings Bioinform., 20, 3, 931-951 |
Briefings Bioinform., 20, 3, 931-951 |
2019 |
Refereed |
|
Research paper(scientific journal) |
Disclose to all |
Jiangning Song, Yanan Wang, Fuyi Li, Tatsuya Akutsu, Neil D. Rawlings, Geoffrey I. Webb, Kuo-Chen Chou |
Jiangning Song, Yanan Wang, Fuyi Li, Tatsuya Akutsu, Neil D. Rawlings, Geoffrey I. Webb, Kuo-Chen Chou |
Jiangning Song, Yanan Wang, Fuyi Li, Tatsuya Akutsu, Neil D. Rawlings, Geoffrey I. Webb, Kuo-Chen Chou |
iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites. |
iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites. |
iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites. |
Briefings Bioinform., 20, 2, 638-658 |
Briefings Bioinform., 20, 2, 638-658 |
Briefings Bioinform., 20, 2, 638-658 |
2019 |
Refereed |
|
Research paper(scientific journal) |
Disclose to all |
Jiawei Wang, Jiahui Li, Bingjiao Yang, Ruopeng Xie, Tatiana T. Marquez-Lago, André Leier, Morihiro Hayashida, Tatsuya Akutsu, Yanju Zhang, Kuo-Chen Chou, Joel Selkrig, Tieli Zhou, Jiangning Song, Trevor Lithgow |
Jiawei Wang, Jiahui Li, Bingjiao Yang, Ruopeng Xie, Tatiana T. Marquez-Lago, André Leier, Morihiro Hayashida, Tatsuya Akutsu, Yanju Zhang, Kuo-Chen Chou, Joel Selkrig, Tieli Zhou, Jiangning Song, Trevor Lithgow |
Jiawei Wang, Jiahui Li, Bingjiao Yang, Ruopeng Xie, Tatiana T. Marquez-Lago, André Leier, Morihiro Hayashida, Tatsuya Akutsu, Yanju Zhang, Kuo-Chen Chou, Joel Selkrig, Tieli Zhou, Jiangning Song, Trevor Lithgow |
Bastion3: a two-layer ensemble predictor of type III secreted effectors. |
Bastion3: a two-layer ensemble predictor of type III secreted effectors. |
Bastion3: a two-layer ensemble predictor of type III secreted effectors. |
Bioinform., 35, 12, 2017-2028 |
Bioinform., 35, 12, 2017-2028 |
Bioinform., 35, 12, 2017-2028 |
2019 |
Refereed |
|
Research paper(scientific journal) |
Disclose to all |
Jingwen Zeng, Hongmin Cai, Hong Peng, Haiyan Wang, Yue Zhang, Tatsuya Akutsu |
Jingwen Zeng, Hongmin Cai, Hong Peng, Haiyan Wang, Yue Zhang, Tatsuya Akutsu |
Jingwen Zeng, Hongmin Cai, Hong Peng, Haiyan Wang, Yue Zhang, Tatsuya Akutsu |
Causalcall: Nanopore Basecalling Using a Temporal Convolutional Network. |
Causalcall: Nanopore Basecalling Using a Temporal Convolutional Network. |
Causalcall: Nanopore Basecalling Using a Temporal Convolutional Network. |
Frontiers in genetics, 10, 1332-1332 |
Frontiers in genetics, 10, 1332-1332 |
Frontiers in genetics, 10, 1332-1332 |
2019 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Zhen Chen, Xuhan Liu, Fuyi Li, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Tatsuya Akutsu, Geoffrey I. Webb, Dakang Xu, Alexander Ian Smith, Lei Li 0013, Kuo-Chen Chou, Jiangning Song |
Zhen Chen, Xuhan Liu, Fuyi Li, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Tatsuya Akutsu, Geoffrey I. Webb, Dakang Xu, Alexander Ian Smith, Lei Li 0013, Kuo-Chen Chou, Jiangning Song |
Zhen Chen, Xuhan Liu, Fuyi Li, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Tatsuya Akutsu, Geoffrey I. Webb, Dakang Xu, Alexander Ian Smith, Lei Li 0013, Kuo-Chen Chou, Jiangning Song |
Large-scale comparative assessment of computational predictors for lysine post-translational modification sites. |
Large-scale comparative assessment of computational predictors for lysine post-translational modification sites. |
Large-scale comparative assessment of computational predictors for lysine post-translational modification sites. |
Briefings Bioinform., 20, 6, 2267-2290 |
Briefings Bioinform., 20, 6, 2267-2290 |
Briefings Bioinform., 20, 6, 2267-2290 |
2019 |
Refereed |
|
Research paper(scientific journal) |
Disclose to all |
Yanju Zhang, Ruopeng Xie, Jiawei Wang, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Jiangning Song |
Yanju Zhang, Ruopeng Xie, Jiawei Wang, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Jiangning Song |
Yanju Zhang, Ruopeng Xie, Jiawei Wang, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Jiangning Song |
Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework. |
Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework. |
Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework. |
Briefings Bioinform., 20, 6, 2185-2199 |
Briefings Bioinform., 20, 6, 2185-2199 |
Briefings Bioinform., 20, 6, 2185-2199 |
2019 |
Refereed |
|
Research paper(scientific journal) |
Disclose to all |
Fuyi Li, Yanan Wang, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Neil D. Rawlings, Gholamreza Haffari, Jerico Nico De Leon Revote, Tatsuya Akutsu, Kuo-Chen Chou, Anthony W. Purcell, Robert N. Pike, Geoffrey I. Webb, Alexander Ian Smith, Trevor Lithgow, Roger J. Daly, James C. Whisstock, Jiangning Song |
Fuyi Li, Yanan Wang, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Neil D. Rawlings, Gholamreza Haffari, Jerico Nico De Leon Revote, Tatsuya Akutsu, Kuo-Chen Chou, Anthony W. Purcell, Robert N. Pike, Geoffrey I. Webb, Alexander Ian Smith, Trevor Lithgow, Roger J. Daly, James C. Whisstock, Jiangning Song |
Fuyi Li, Yanan Wang, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Neil D. Rawlings, Gholamreza Haffari, Jerico Nico De Leon Revote, Tatsuya Akutsu, Kuo-Chen Chou, Anthony W. Purcell, Robert N. Pike, Geoffrey I. Webb, Alexander Ian Smith, Trevor Lithgow, Roger J. Daly, James C. Whisstock, Jiangning Song |
Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods. |
Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods. |
Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods. |
Briefings Bioinform., 20, 6, 2150-2166 |
Briefings Bioinform., 20, 6, 2150-2166 |
Briefings Bioinform., 20, 6, 2150-2166 |
2019 |
Refereed |
|
Research paper(scientific journal) |
Disclose to all |
Yu Bao, Simone Marini, Takeyuki Tamura, Mayumi Kamada, Shingo Maegawa, Hiroshi Hosokawa, Jiangning Song, Tatsuya Akutsu |
Yu Bao, Simone Marini, Takeyuki Tamura, Mayumi Kamada, Shingo Maegawa, Hiroshi Hosokawa, Jiangning Song, Tatsuya Akutsu |
Yu Bao, Simone Marini, Takeyuki Tamura, Mayumi Kamada, Shingo Maegawa, Hiroshi Hosokawa, Jiangning Song, Tatsuya Akutsu |
Toward more accurate prediction of caspase cleavage sites: a comprehensive review of current methods, tools and features. |
Toward more accurate prediction of caspase cleavage sites: a comprehensive review of current methods, tools and features. |
Toward more accurate prediction of caspase cleavage sites: a comprehensive review of current methods, tools and features. |
Briefings Bioinform., 20, 5, 1669-1684 |
Briefings Bioinform., 20, 5, 1669-1684 |
Briefings Bioinform., 20, 5, 1669-1684 |
2019 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Nishiyama Y, Shurbevski A, Nagamochi H, Akutsu T |
Nishiyama Y, Shurbevski A, Nagamochi H, Akutsu T |
Nishiyama Y, Shurbevski A, Nagamochi H, Akutsu T |
Resource Cut, a New Bounding Procedure to Algorithms for Enumerating Tree-Like Chemical Graphs. |
Resource Cut, a New Bounding Procedure to Algorithms for Enumerating Tree-Like Chemical Graphs. |
Resource Cut, a New Bounding Procedure to Algorithms for Enumerating Tree-Like Chemical Graphs. |
IEEE/ACM transactions on computational biology and bioinformatics, 16, 1, 77-90 |
IEEE/ACM transactions on computational biology and bioinformatics, 16, 1, 77-90 |
IEEE/ACM transactions on computational biology and bioinformatics, 16, 1, 77-90 |
2019/01 |
Refereed |
|
|
Disclose to all |
Simone Marini, Francesca Vitali, Sara Rampazzi, Andrea Demartini, Tatsuya Akutsu |
Simone Marini, Francesca Vitali, Sara Rampazzi, Andrea Demartini, Tatsuya Akutsu |
Simone Marini, Francesca Vitali, Sara Rampazzi, Andrea Demartini, Tatsuya Akutsu |
Protease target prediction via matrix factorization. |
Protease target prediction via matrix factorization. |
Protease target prediction via matrix factorization. |
Bioinform., 35, 6, 923-929 |
Bioinform., 35, 6, 923-929 |
Bioinform., 35, 6, 923-929 |
2019 |
Refereed |
|
Research paper(scientific journal) |
Disclose to all |
Nacher JC, Akutsu T |
Nacher JC, Akutsu T |
Nacher JC, Akutsu T |
Controllability Methods for Identifying Associations Between Critical Control ncRNAs and Human Diseases. |
Controllability Methods for Identifying Associations Between Critical Control ncRNAs and Human Diseases. |
Controllability Methods for Identifying Associations Between Critical Control ncRNAs and Human Diseases. |
Methods in molecular biology (Clifton, N.J.), 1912, 289-300 |
Methods in molecular biology (Clifton, N.J.), 1912, 289-300 |
Methods in molecular biology (Clifton, N.J.), 1912, 289-300 |
2019 |
Refereed |
|
|
Disclose to all |
Nacher JC, Ishitsuka M, Miyazaki S, Akutsu T |
Nacher JC, Ishitsuka M, Miyazaki S, Akutsu T |
Nacher JC, Ishitsuka M, Miyazaki S, Akutsu T |
Finding and analysing the minimum set of driver nodes required to control multilayer networks.  |
Finding and analysing the minimum set of driver nodes required to control multilayer networks.  |
Finding and analysing the minimum set of driver nodes required to control multilayer networks.  |
Scientific reports, 9, 1, 576 |
Scientific reports, 9, 1, 576 |
Scientific reports, 9, 1, 576 |
2019/01 |
Refereed |
|
|
Disclose to all |
Li F, Li C, Marquez-Lago TT, Leier A, Akutsu T, Purcell AW, Ian Smith A, Lithgow T, Daly RJ, Song J, Chou KC |
Li F, Li C, Marquez-Lago TT, Leier A, Akutsu T, Purcell AW, Ian Smith A, Lithgow T, Daly RJ, Song J, Chou KC |
Li F, Li C, Marquez-Lago TT, Leier A, Akutsu T, Purcell AW, Ian Smith A, Lithgow T, Daly RJ, Song J, Chou KC |
Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome. |
Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome. |
Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome. |
Bioinformatics (Oxford, England), 34, 24, 4223-4231 |
Bioinformatics (Oxford, England), 34, 24, 4223-4231 |
Bioinformatics (Oxford, England), 34, 24, 4223-4231 |
2018/12 |
Refereed |
|
|
Disclose to all |
Tamura T, Lu W, Song J, Akutsu T |
Tamura T, Lu W, Song J, Akutsu T |
Tamura T, Lu W, Song J, Akutsu T |
Computing Minimum Reaction Modifications in a Boolean Metabolic Network. |
Computing Minimum Reaction Modifications in a Boolean Metabolic Network. |
Computing Minimum Reaction Modifications in a Boolean Metabolic Network. |
IEEE/ACM transactions on computational biology and bioinformatics, 15, 6, 1853-1862 |
IEEE/ACM transactions on computational biology and bioinformatics, 15, 6, 1853-1862 |
IEEE/ACM transactions on computational biology and bioinformatics, 15, 6, 1853-1862 |
2018/11 |
Refereed |
|
|
Disclose to all |
Tatsuya Akutsu, Colin De La Higuera, Takeyuki Tamura |
Tatsuya Akutsu, Colin De La Higuera, Takeyuki Tamura |
Tatsuya Akutsu, Colin De La Higuera, Takeyuki Tamura |
A simple linear-time algorithm for computing the centroid and canonical form of a plane graph and its applications |
A simple linear-time algorithm for computing the centroid and canonical form of a plane graph and its applications |
A simple linear-time algorithm for computing the centroid and canonical form of a plane graph and its applications |
Leibniz International Proceedings in Informatics, LIPIcs, 105, 101-1012 |
Leibniz International Proceedings in Informatics, LIPIcs, 105, 101-1012 |
Leibniz International Proceedings in Informatics, LIPIcs, 105, 101-1012 |
2018/05/01 |
Refereed |
English |
Research paper(international conference proceedings) |
Disclose to all |
Yuui Tamura, Hiroshi Nagamochi, Aleksandar Shurbevski, Tatsuya Akutsu |
Yuui Tamura, Hiroshi Nagamochi, Aleksandar Shurbevski, Tatsuya Akutsu |
Yuui Tamura, Hiroshi Nagamochi, Aleksandar Shurbevski, Tatsuya Akutsu |
Enumerating chemical mono-block 3-augmented trees with two junctions |
Enumerating chemical mono-block 3-augmented trees with two junctions |
Enumerating chemical mono-block 3-augmented trees with two junctions |
ACM International Conference Proceeding Series, 48-55 |
ACM International Conference Proceeding Series, 48-55 |
ACM International Conference Proceeding Series, 48-55 |
2018/01/18 |
Refereed |
English |
Research paper(international conference proceedings) |
Disclose to all |
Tatsuya Akutsu, Jesper Jansson,Ruiming Li, Atsuhiro Takasu, Takeyuki Tamura |
Tatsuya Akutsu, Jesper Jansson,Ruiming Li, Atsuhiro Takasu, Takeyuki Tamura |
Tatsuya Akutsu, Jesper Jansson,Ruiming Li, Atsuhiro Takasu, Takeyuki Tamura |
New and Improved Algorithms for Unordered Tree Inclusion. |
New and Improved Algorithms for Unordered Tree Inclusion. |
New and Improved Algorithms for Unordered Tree Inclusion. |
29th International Symposium on Algorithms and Computation, ISAAC 2018, December 16-19, 2018, Jiaoxi, Yilan, Taiwan, 27:1-27:12 |
29th International Symposium on Algorithms and Computation, ISAAC 2018, December 16-19, 2018, Jiaoxi, Yilan, Taiwan, 27:1-27:12 |
29th International Symposium on Algorithms and Computation, ISAAC 2018, December 16-19, 2018, Jiaoxi, Yilan, Taiwan, 27:1-27:12 |
2018 |
Refereed |
|
|
Disclose to all |
Yushan Qiu, Xiaoqing Cheng, Wai-Ki Ching, Hao Jiang, Tatsuya Akutsu |
Yushan Qiu, Xiaoqing Cheng, Wai-Ki Ching, Hao Jiang, Tatsuya Akutsu |
Yushan Qiu, Xiaoqing Cheng, Wai-Ki Ching, Hao Jiang, Tatsuya Akutsu |
On Observability of Attractors in Boolean Networks |
On Observability of Attractors in Boolean Networks |
On Observability of Attractors in Boolean Networks |
PROCEEDINGS 2015 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE, 263-266 |
PROCEEDINGS 2015 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE, 263-266 |
PROCEEDINGS 2015 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE, 263-266 |
2015 |
Refereed |
English |
Research paper(international conference proceedings) |
Disclose to all |
Jose C. Nacher, Tatsuya Akutsu |
Jose C. Nacher, Tatsuya Akutsu |
Jose C. Nacher, Tatsuya Akutsu |
Analysis of critical and redundant nodes in controlling directed and undirected complex networks using dominating sets |
Analysis of critical and redundant nodes in controlling directed and undirected complex networks using dominating sets |
Analysis of critical and redundant nodes in controlling directed and undirected complex networks using dominating sets |
Journal of Complex Networks, 2, 4, 394-412 |
Journal of Complex Networks, 2, 4, 394-412 |
Journal of Complex Networks, 2, 4, 394-412 |
2014 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Natsu Nakajima, Tatsuya Akutsu |
Natsu Nakajima, Tatsuya Akutsu |
Natsu Nakajima, Tatsuya Akutsu |
Network completion for static gene expression data  |
Network completion for static gene expression data  |
Network completion for static gene expression data  |
Advances in Bioinformatics, 2014 |
Advances in Bioinformatics, 2014 |
Advances in Bioinformatics, 2014 |
2014 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Tatsuya Akutsu, Takeyuki Tamura |
Tatsuya Akutsu, Takeyuki Tamura |
Tatsuya Akutsu, Takeyuki Tamura |
A polynomial-time algorithm for computing the maximum common connected edge subgraph of outerplanar graphs of bounded Degree  |
A polynomial-time algorithm for computing the maximum common connected edge subgraph of outerplanar graphs of bounded Degree  |
A polynomial-time algorithm for computing the maximum common connected edge subgraph of outerplanar graphs of bounded Degree  |
Algorithms, 6, 1, 119-135 |
Algorithms, 6, 1, 119-135 |
Algorithms, 6, 1, 119-135 |
2013 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Tatsuya Akutsu, Takeyuki Tamura, Avraham A. Melkman, Atsuhiro Takasu |
Tatsuya Akutsu, Takeyuki Tamura, Avraham A. Melkman, Atsuhiro Takasu |
Tatsuya Akutsu, Takeyuki Tamura, Avraham A. Melkman, Atsuhiro Takasu |
On the complexity of finding a largest common subtree of bounded degree |
On the complexity of finding a largest common subtree of bounded degree |
On the complexity of finding a largest common subtree of bounded degree |
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 8070, 4-15 |
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 8070, 4-15 |
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 8070, 4-15 |
2013 |
Refereed |
English |
Research paper(international conference proceedings) |
Disclose to all |
J. C. Nacher, T. Akutsu |
J. C. Nacher, T. Akutsu |
J. C. Nacher, T. Akutsu |
On the degree distribution of projected networks mapped from bipartite networks |
On the degree distribution of projected networks mapped from bipartite networks |
On the degree distribution of projected networks mapped from bipartite networks |
Physica A: Statistical Mechanics and its Applications, 390, 23-24, 4636-4651 |
Physica A: Statistical Mechanics and its Applications, 390, 23-24, 4636-4651 |
Physica A: Statistical Mechanics and its Applications, 390, 23-24, 4636-4651 |
2011/11/01 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
J. C. Nacher, M. Hayashida, T. Akutsu |
J. C. Nacher, M. Hayashida, T. Akutsu |
J. C. Nacher, M. Hayashida, T. Akutsu |
The role of internal duplication in the evolution of multi-domain proteins |
The role of internal duplication in the evolution of multi-domain proteins |
The role of internal duplication in the evolution of multi-domain proteins |
BIOSYSTEMS, 101, 2, 127-135 |
BIOSYSTEMS, 101, 2, 127-135 |
BIOSYSTEMS, 101, 2, 127-135 |
2010/08 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Jiangning Song, Kazuhiro Takemoto, Hongbin Shen, Hao Tan, M. Michael Gromiha, Tatsuya Akutsu |
Jiangning Song, Kazuhiro Takemoto, Hongbin Shen, Hao Tan, M. Michael Gromiha, Tatsuya Akutsu |
Jiangning Song, Kazuhiro Takemoto, Hongbin Shen, Hao Tan, M. Michael Gromiha, Tatsuya Akutsu |
Prediction of protein folding rates from structural topology and complex network properties |
Prediction of protein folding rates from structural topology and complex network properties |
Prediction of protein folding rates from structural topology and complex network properties |
IPSJ Transactions on Bioinformatics, 3, 40-53 |
IPSJ Transactions on Bioinformatics, 3, 40-53 |
IPSJ Transactions on Bioinformatics, 3, 40-53 |
2010 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Tamura T, Takemoto K, Akutsu, T |
Tamura T, Takemoto K, Akutsu, T |
Tamura T, Takemoto K, Akutsu, T |
Finding minimum reaction cuts of metabolic networks under a Boolean model using integer programming and feedback vertex sets |
Finding minimum reaction cuts of metabolic networks under a Boolean model using integer programming and feedback vertex sets |
Finding minimum reaction cuts of metabolic networks under a Boolean model using integer programming and feedback vertex sets |
International Journal of Knowledge Discovery in Bioinformatics, 1, 1, 14-31 |
International Journal of Knowledge Discovery in Bioinformatics, 1, 1, 14-31 |
International Journal of Knowledge Discovery in Bioinformatics, 1, 1, 14-31 |
2010/01 |
Refereed |
|
|
Disclose to all |
J. C. Nacher, T. Ochiai, M. Hayashida, T. Akutsu |
J. C. Nacher, T. Ochiai, M. Hayashida, T. Akutsu |
J. C. Nacher, T. Ochiai, M. Hayashida, T. Akutsu |
A mathematical model for generating bipartite graphs and its application to protein networks |
A mathematical model for generating bipartite graphs and its application to protein networks |
A mathematical model for generating bipartite graphs and its application to protein networks |
JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL, 42, 48 |
JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL, 42, 48 |
JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL, 42, 48 |
2009/12 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
M. Hayashida, T. Tamura, T. Akutsu, W. -K. Ching, Y. Cong |
M. Hayashida, T. Tamura, T. Akutsu, W. -K. Ching, Y. Cong |
M. Hayashida, T. Tamura, T. Akutsu, W. -K. Ching, Y. Cong |
Distribution and enumeration of attractors in probabilistic Boolean networks |
Distribution and enumeration of attractors in probabilistic Boolean networks |
Distribution and enumeration of attractors in probabilistic Boolean networks |
IET SYSTEMS BIOLOGY, 3, 6, 465-474 |
IET SYSTEMS BIOLOGY, 3, 6, 465-474 |
IET SYSTEMS BIOLOGY, 3, 6, 465-474 |
2009/11 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Takeyuki Tamura, Tatsuya Akutsu |
Takeyuki Tamura, Tatsuya Akutsu |
Takeyuki Tamura, Tatsuya Akutsu |
Algorithms for singleton attractor detection in planar and nonplanar AND/OR Boolean networks  |
Algorithms for singleton attractor detection in planar and nonplanar AND/OR Boolean networks  |
Algorithms for singleton attractor detection in planar and nonplanar AND/OR Boolean networks  |
Mathematics in Computer Science, 2, 3, 401-420 |
Mathematics in Computer Science, 2, 3, 401-420 |
Mathematics in Computer Science, 2, 3, 401-420 |
2009/03 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
J. C. Nacher, M. Hayashida, T. Akutsu |
J. C. Nacher, M. Hayashida, T. Akutsu |
J. C. Nacher, M. Hayashida, T. Akutsu |
Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairs |
Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairs |
Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairs |
BIOSYSTEMS, 95, 2, 155-159 |
BIOSYSTEMS, 95, 2, 155-159 |
BIOSYSTEMS, 95, 2, 155-159 |
2009/02 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Takeyuki Tamura, Tatsuya Akutsu |
Takeyuki Tamura, Tatsuya Akutsu |
Takeyuki Tamura, Tatsuya Akutsu |
Detecting a Singleton Attractor in a Boolean Network Utilizing SAT Algorithms |
Detecting a Singleton Attractor in a Boolean Network Utilizing SAT Algorithms |
Detecting a Singleton Attractor in a Boolean Network Utilizing SAT Algorithms |
IEICE TRANSACTIONS ON FUNDAMENTALS OF ELECTRONICS COMMUNICATIONS AND COMPUTER SCIENCES, E92A, 2, 493-501 |
IEICE TRANSACTIONS ON FUNDAMENTALS OF ELECTRONICS COMMUNICATIONS AND COMPUTER SCIENCES, E92A, 2, 493-501 |
IEICE TRANSACTIONS ON FUNDAMENTALS OF ELECTRONICS COMMUNICATIONS AND COMPUTER SCIENCES, E92A, 2, 493-501 |
2009/02 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Tatsuya Akutsu, Morihiro Hayashida |
Tatsuya Akutsu, Morihiro Hayashida |
Tatsuya Akutsu, Morihiro Hayashida |
Domain-based prediction and analysis of protein-protein interactions |
Domain-based prediction and analysis of protein-protein interactions |
Domain-based prediction and analysis of protein-protein interactions |
Biological Data Mining in Protein Interaction Networks, 29-44 |
Biological Data Mining in Protein Interaction Networks, 29-44 |
Biological Data Mining in Protein Interaction Networks, 29-44 |
2009 |
Refereed |
English |
|
Disclose to all |
Tatsuya Akutsu, Morihiro Hayashida, Takeyuki Tamura |
Tatsuya Akutsu, Morihiro Hayashida, Takeyuki Tamura |
Tatsuya Akutsu, Morihiro Hayashida, Takeyuki Tamura |
Integer programming-based methods for attractor detection and control of boolean networks |
Integer programming-based methods for attractor detection and control of boolean networks |
Integer programming-based methods for attractor detection and control of boolean networks |
Proceedings of the IEEE Conference on Decision and Control, 5610-5617 |
Proceedings of the IEEE Conference on Decision and Control, 5610-5617 |
Proceedings of the IEEE Conference on Decision and Control, 5610-5617 |
2009 |
Refereed |
English |
Research paper(international conference proceedings) |
Disclose to all |
HAYASHIDA Morihiro, AKUTSU Tatsuya, NAGAMOCHI Hiroshi |
HAYASHIDA Morihiro, AKUTSU Tatsuya, NAGAMOCHI Hiroshi |
HAYASHIDA Morihiro, AKUTSU Tatsuya, NAGAMOCHI Hiroshi |
A Clustering Method for Analysis of Sequence Similarity Networks of Proteins Using Maximal Components of Graphs |
A Clustering Method for Analysis of Sequence Similarity Networks of Proteins Using Maximal Components of Graphs |
A Clustering Method for Analysis of Sequence Similarity Networks of Proteins Using Maximal Components of Graphs |
情報処理学会論文誌, 49, SIG5(TBIO4), 15-24 |
情報処理学会論文誌, 49, SIG5(TBIO4), 15-24 |
情報処理学会論文誌, 49, SIG5(TBIO4), 15-24 |
2008/03/15 |
Refereed |
English |
|
Disclose to all |
Takeyuki Tamura, Morihiro Hayashida, Tatsuya Akutsu, Shu-Qin Zhang, Wai-Ki Ching |
Takeyuki Tamura, Morihiro Hayashida, Tatsuya Akutsu, Shu-Qin Zhang, Wai-Ki Ching |
Takeyuki Tamura, Morihiro Hayashida, Tatsuya Akutsu, Shu-Qin Zhang, Wai-Ki Ching |
Algorithms and complexity analyses for control of singleton attractors in Boolean networks  |
Algorithms and complexity analyses for control of singleton attractors in Boolean networks  |
Algorithms and complexity analyses for control of singleton attractors in Boolean networks  |
Eurasip Journal on Bioinformatics and Systems Biology, 2008 |
Eurasip Journal on Bioinformatics and Systems Biology, 2008 |
Eurasip Journal on Bioinformatics and Systems Biology, 2008 |
2008 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
T. Ochiai, J. C. Nacher, T. Akutsu |
T. Ochiai, J. C. Nacher, T. Akutsu |
T. Ochiai, J. C. Nacher, T. Akutsu |
Emergence of the self-similar property in gene expression dynamics |
Emergence of the self-similar property in gene expression dynamics |
Emergence of the self-similar property in gene expression dynamics |
Physica A: Statistical Mechanics and its Applications, 382, 2, 739-752 |
Physica A: Statistical Mechanics and its Applications, 382, 2, 739-752 |
Physica A: Statistical Mechanics and its Applications, 382, 2, 739-752 |
2007/08/15 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Shu-Qin Zhang, Morihiro Hayashida, Tatsuya Akutsu, Wai-Ki Ching, Michael K. Ng |
Shu-Qin Zhang, Morihiro Hayashida, Tatsuya Akutsu, Wai-Ki Ching, Michael K. Ng |
Shu-Qin Zhang, Morihiro Hayashida, Tatsuya Akutsu, Wai-Ki Ching, Michael K. Ng |
Algorithms for finding small attractors in boolean networks |
Algorithms for finding small attractors in boolean networks |
Algorithms for finding small attractors in boolean networks |
Eurasip Journal on Bioinformatics and Systems Biology, 2007 |
Eurasip Journal on Bioinformatics and Systems Biology, 2007 |
Eurasip Journal on Bioinformatics and Systems Biology, 2007 |
2007 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
J. C. Nacher, T. Akutsu |
J. C. Nacher, T. Akutsu |
J. C. Nacher, T. Akutsu |
Sensitivity of the power-law exponent in gene expression distribution to mRNA decay rate |
Sensitivity of the power-law exponent in gene expression distribution to mRNA decay rate |
Sensitivity of the power-law exponent in gene expression distribution to mRNA decay rate |
Physics Letters, Section A: General, Atomic and Solid State Physics, 360, 1, 174-178 |
Physics Letters, Section A: General, Atomic and Solid State Physics, 360, 1, 174-178 |
Physics Letters, Section A: General, Atomic and Solid State Physics, 360, 1, 174-178 |
2006/12/18 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
JC Nacher, M Hayashida, T Akutsu |
JC Nacher, M Hayashida, T Akutsu |
JC Nacher, M Hayashida, T Akutsu |
Protein domain networks: Scale-free mixing of positive and negative exponents |
Protein domain networks: Scale-free mixing of positive and negative exponents |
Protein domain networks: Scale-free mixing of positive and negative exponents |
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 367, 538-552 |
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 367, 538-552 |
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 367, 538-552 |
2006/07 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Tatsuya Akutsu, Satoru Miyano |
Tatsuya Akutsu, Satoru Miyano |
Tatsuya Akutsu, Satoru Miyano |
Selecting informative genes for cancer classification using gene expression data |
Selecting informative genes for cancer classification using gene expression data |
Selecting informative genes for cancer classification using gene expression data |
Computational and Statistical Approaches to Genomics, 75-88 |
Computational and Statistical Approaches to Genomics, 75-88 |
Computational and Statistical Approaches to Genomics, 75-88 |
2006 |
Refereed |
English |
|
Disclose to all |
Bahadur K.C. Dukka, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto, Tatsuya Akutsu |
Bahadur K.C. Dukka, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto, Tatsuya Akutsu |
Bahadur K.C. Dukka, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto, Tatsuya Akutsu |
Protein threading with profiles and distance constraints using clique based algorithms |
Protein threading with profiles and distance constraints using clique based algorithms |
Protein threading with profiles and distance constraints using clique based algorithms |
Journal of Bioinformatics and Computational Biology, 4, 1, 19-42 |
Journal of Bioinformatics and Computational Biology, 4, 1, 19-42 |
Journal of Bioinformatics and Computational Biology, 4, 1, 19-42 |
2006 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
J. C. Nacher, T. Ochiai, T. Yamada, M. Kanehisa, T. Akutsu |
J. C. Nacher, T. Ochiai, T. Yamada, M. Kanehisa, T. Akutsu |
J. C. Nacher, T. Ochiai, T. Yamada, M. Kanehisa, T. Akutsu |
The role of log-normal dynamics in the evolution of biochemical pathways |
The role of log-normal dynamics in the evolution of biochemical pathways |
The role of log-normal dynamics in the evolution of biochemical pathways |
BioSystems, 83, 1, 26-37 |
BioSystems, 83, 1, 26-37 |
BioSystems, 83, 1, 26-37 |
2006/01 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
竹本和広, ホセ・C・ナチェル, 阿久津達也 |
竹本和広, ホセ・C・ナチェル, 阿久津達也 |
|
原核生物の代謝ネットワークにおける 構造の乱雑さと生育温度の関係 |
原核生物の代謝ネットワークにおける 構造の乱雑さと生育温度の関係 |
|
日本ソフトウェア科学会研究会資料, 44, 31-37 |
日本ソフトウェア科学会研究会資料, 44, 31-37 |
, 44, 31-37 |
2006 |
Refereed |
|
Research paper(other academic) |
Disclose to all |
Setsuro Matsuda, Jean-Philippe Vert, Hiroto Saigo, Nobuhisa Ueda, Hiroyuki Toh, Tatsuya Akutsu |
Setsuro Matsuda, Jean-Philippe Vert, Hiroto Saigo, Nobuhisa Ueda, Hiroyuki Toh, Tatsuya Akutsu |
Setsuro Matsuda, Jean-Philippe Vert, Hiroto Saigo, Nobuhisa Ueda, Hiroyuki Toh, Tatsuya Akutsu |
A novel representation of protein sequences for prediction of subcellular location using support vector machines |
A novel representation of protein sequences for prediction of subcellular location using support vector machines |
A novel representation of protein sequences for prediction of subcellular location using support vector machines |
Protein Science, 14, 11, 2804-2813 |
Protein Science, 14, 11, 2804-2813 |
Protein Science, 14, 11, 2804-2813 |
2005/11 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
J. C. Nacher, T. Ochiai, T. Akutsu |
J. C. Nacher, T. Ochiai, T. Akutsu |
J. C. Nacher, T. Ochiai, T. Akutsu |
On the relation between fluctuation and scaling-law in gene expression time series from yeast to human |
On the relation between fluctuation and scaling-law in gene expression time series from yeast to human |
On the relation between fluctuation and scaling-law in gene expression time series from yeast to human |
Modern Physics Letters B, 19, 23, 1169-1177 |
Modern Physics Letters B, 19, 23, 1169-1177 |
Modern Physics Letters B, 19, 23, 1169-1177 |
2005/10/20 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Wai-Ki Ching, Michael M. Ng, Eric S. Fung, Tatsuya Akutsu |
Wai-Ki Ching, Michael M. Ng, Eric S. Fung, Tatsuya Akutsu |
Wai-Ki Ching, Michael M. Ng, Eric S. Fung, Tatsuya Akutsu |
On construction of stochastic genetic networks based on gene expression sequences |
On construction of stochastic genetic networks based on gene expression sequences |
On construction of stochastic genetic networks based on gene expression sequences |
International Journal of Neural Systems, 15, 4, 297-310 |
International Journal of Neural Systems, 15, 4, 297-310 |
International Journal of Neural Systems, 15, 4, 297-310 |
2005/08 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Nobuhisa Ueda, Kiyoko F. Aoki-Kinoshita, Atsuko Yamaguchi, Tatsuya Akutsu, Hiroshi Mamitsuka |
Nobuhisa Ueda, Kiyoko F. Aoki-Kinoshita, Atsuko Yamaguchi, Tatsuya Akutsu, Hiroshi Mamitsuka |
Nobuhisa Ueda, Kiyoko F. Aoki-Kinoshita, Atsuko Yamaguchi, Tatsuya Akutsu, Hiroshi Mamitsuka |
A probabilistic model for mining labeled ordered trees: Capturing patterns in carbohydrate sugar chains  |
A probabilistic model for mining labeled ordered trees: Capturing patterns in carbohydrate sugar chains  |
A probabilistic model for mining labeled ordered trees: Capturing patterns in carbohydrate sugar chains  |
IEEE Transactions on Knowledge and Data Engineering, 17, 8, 1051-1064 |
IEEE Transactions on Knowledge and Data Engineering, 17, 8, 1051-1064 |
IEEE Transactions on Knowledge and Data Engineering, 17, 8, 1051-1064 |
2005/08 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Pierre Mahé, Nobuhisa Ueda, Tatsuya Akutsu, Jean-Luc Perret, Jean-Philippe Vert |
Pierre Mahé, Nobuhisa Ueda, Tatsuya Akutsu, Jean-Luc Perret, Jean-Philippe Vert |
Pierre Mahé, Nobuhisa Ueda, Tatsuya Akutsu, Jean-Luc Perret, Jean-Philippe Vert |
Graph kernels for molecular structure-activity relationship analysis with support vector machines |
Graph kernels for molecular structure-activity relationship analysis with support vector machines |
Graph kernels for molecular structure-activity relationship analysis with support vector machines |
Journal of Chemical Information and Modeling, 45, 4, 939-951 |
Journal of Chemical Information and Modeling, 45, 4, 939-951 |
Journal of Chemical Information and Modeling, 45, 4, 939-951 |
2005/07 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
T. Ochiai, J. C. Nacher, T. Akutsu |
T. Ochiai, J. C. Nacher, T. Akutsu |
T. Ochiai, J. C. Nacher, T. Akutsu |
A stochastic approach to multi-gene expression dynamics |
A stochastic approach to multi-gene expression dynamics |
A stochastic approach to multi-gene expression dynamics |
Physics Letters, Section A: General, Atomic and Solid State Physics, 339, 1-2, 1-9 |
Physics Letters, Section A: General, Atomic and Solid State Physics, 339, 1-2, 1-9 |
Physics Letters, Section A: General, Atomic and Solid State Physics, 339, 1-2, 1-9 |
2005/05/16 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Masumi Itoh, Susumu Goto, Tatsuya Akutsu, Minoru Kanehisa |
Masumi Itoh, Susumu Goto, Tatsuya Akutsu, Minoru Kanehisa |
Masumi Itoh, Susumu Goto, Tatsuya Akutsu, Minoru Kanehisa |
Fast and accurate database homology search using upper bounds of local alignment scores |
Fast and accurate database homology search using upper bounds of local alignment scores |
Fast and accurate database homology search using upper bounds of local alignment scores |
Bioinformatics, 21, 7, 912-921 |
Bioinformatics, 21, 7, 912-921 |
Bioinformatics, 21, 7, 912-921 |
2005/04/01 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
J. C. Nacher, T. Yamada, S. Goto, M. Kanehisa, T. Akutsu |
J. C. Nacher, T. Yamada, S. Goto, M. Kanehisa, T. Akutsu |
J. C. Nacher, T. Yamada, S. Goto, M. Kanehisa, T. Akutsu |
Two complementary representations of a scale-free network |
Two complementary representations of a scale-free network |
Two complementary representations of a scale-free network |
Physica A: Statistical Mechanics and its Applications, 349, 1-2, 349-363 |
Physica A: Statistical Mechanics and its Applications, 349, 1-2, 349-363 |
Physica A: Statistical Mechanics and its Applications, 349, 1-2, 349-363 |
2005/04/01 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
KF Aoki, H Mamitsuka, T Akutsu, M Kanehisa |
KF Aoki, H Mamitsuka, T Akutsu, M Kanehisa |
KF Aoki, H Mamitsuka, T Akutsu, M Kanehisa |
A score matrix to reveal the hidden links in glycans |
A score matrix to reveal the hidden links in glycans |
A score matrix to reveal the hidden links in glycans |
BIOINFORMATICS, 21, 8, 1457-1463 |
BIOINFORMATICS, 21, 8, 1457-1463 |
BIOINFORMATICS, 21, 8, 1457-1463 |
2005/04 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
J. C. Nacher, N. Ueda, M. Kanehisa, T. Akutsu |
J. C. Nacher, N. Ueda, M. Kanehisa, T. Akutsu |
J. C. Nacher, N. Ueda, M. Kanehisa, T. Akutsu |
Flexible construction of hierarchical scale-free networks with general exponent |
Flexible construction of hierarchical scale-free networks with general exponent |
Flexible construction of hierarchical scale-free networks with general exponent |
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 71, 3 |
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 71, 3 |
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 71, 3 |
2005/03 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
D Fukagawa, T Akutsu |
D Fukagawa, T Akutsu |
D Fukagawa, T Akutsu |
Performance analysis of a greedy algorithm for inferring Boolean functions |
Performance analysis of a greedy algorithm for inferring Boolean functions |
Performance analysis of a greedy algorithm for inferring Boolean functions |
INFORMATION PROCESSING LETTERS, 93, 1, 7-12 |
INFORMATION PROCESSING LETTERS, 93, 1, 7-12 |
INFORMATION PROCESSING LETTERS, 93, 1, 7-12 |
2005/01 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Jose C. Nacher, Nobuhisa Ueda, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu |
Jose C. Nacher, Nobuhisa Ueda, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu |
Jose C. Nacher, Nobuhisa Ueda, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu |
Clustering under the line graph transformation: Application to reaction network |
Clustering under the line graph transformation: Application to reaction network |
Clustering under the line graph transformation: Application to reaction network |
BMC Bioinformatics, 5 |
BMC Bioinformatics, 5 |
BMC Bioinformatics, 5 |
2004/12/24 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
T. Ochiai, J. C. Nacher, T. Akutsu |
T. Ochiai, J. C. Nacher, T. Akutsu |
T. Ochiai, J. C. Nacher, T. Akutsu |
A constructive approach to gene expression dynamics |
A constructive approach to gene expression dynamics |
A constructive approach to gene expression dynamics |
Physics Letters, Section A: General, Atomic and Solid State Physics, 330, 5, 313-321 |
Physics Letters, Section A: General, Atomic and Solid State Physics, 330, 5, 313-321 |
Physics Letters, Section A: General, Atomic and Solid State Physics, 330, 5, 313-321 |
2004/09/27 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Hiroto Saigo, Jean-Philippe Vert, Nobuhisa Ueda, Tatsuya Akutsu |
Hiroto Saigo, Jean-Philippe Vert, Nobuhisa Ueda, Tatsuya Akutsu |
Hiroto Saigo, Jean-Philippe Vert, Nobuhisa Ueda, Tatsuya Akutsu |
Protein homology detection using string alignment kernels |
Protein homology detection using string alignment kernels |
Protein homology detection using string alignment kernels |
Bioinformatics, 20, 11, 1682-1689 |
Bioinformatics, 20, 11, 1682-1689 |
Bioinformatics, 20, 11, 1682-1689 |
2004/07/22 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
KF Aoki, A Yamaguchi, N Ueda, T Akutsu, H Mamitsuka, S Goto, M Kanehisa |
KF Aoki, A Yamaguchi, N Ueda, T Akutsu, H Mamitsuka, S Goto, M Kanehisa |
KF Aoki, A Yamaguchi, N Ueda, T Akutsu, H Mamitsuka, S Goto, M Kanehisa |
KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains |
KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains |
KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains |
NUCLEIC ACIDS RESEARCH, 32, W267-W272 |
NUCLEIC ACIDS RESEARCH, 32, W267-W272 |
NUCLEIC ACIDS RESEARCH, 32, W267-W272 |
2004/07 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Tatsuya Akutsu, Minoru Kanehisa, Hiroshi Mamitsuka |
Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Tatsuya Akutsu, Minoru Kanehisa, Hiroshi Mamitsuka |
Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Tatsuya Akutsu, Minoru Kanehisa, Hiroshi Mamitsuka |
Managing and analyzing carbohydrate data |
Managing and analyzing carbohydrate data |
Managing and analyzing carbohydrate data |
SIGMOD Record, 33, 2, 33-38 |
SIGMOD Record, 33, 2, 33-38 |
SIGMOD Record, 33, 2, 33-38 |
2004 |
Refereed |
English |
Research paper(international conference proceedings) |
Disclose to all |
T Akutsu, S Kuhara, O Maruyama, S Miyano |
T Akutsu, S Kuhara, O Maruyama, S Miyano |
T Akutsu, S Kuhara, O Maruyama, S Miyano |
Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model |
Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model |
Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model |
THEORETICAL COMPUTER SCIENCE, 298, 1, 235-251 |
THEORETICAL COMPUTER SCIENCE, 298, 1, 235-251 |
THEORETICAL COMPUTER SCIENCE, 298, 1, 235-251 |
2003/04 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara |
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara |
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara |
Inferring qualitative relations in genetic networks and metabolic pathways |
Inferring qualitative relations in genetic networks and metabolic pathways |
Inferring qualitative relations in genetic networks and metabolic pathways |
Bioinformatics, 16, 8, 727-734 |
Bioinformatics, 16, 8, 727-734 |
Bioinformatics, 16, 8, 727-734 |
2000 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Tatsuya Akutsu, Satoru Miyano |
Tatsuya Akutsu, Satoru Miyano |
Tatsuya Akutsu, Satoru Miyano |
On the approximation of protein threading |
On the approximation of protein threading |
On the approximation of protein threading |
Theoretical Computer Science, 210, 2, 261-275 |
Theoretical Computer Science, 210, 2, 261-275 |
Theoretical Computer Science, 210, 2, 261-275 |
1999/01/17 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Tatsuya Akutsu, Hisao Tamaki, Takeshi Tokuyama |
Tatsuya Akutsu, Hisao Tamaki, Takeshi Tokuyama |
Tatsuya Akutsu, Hisao Tamaki, Takeshi Tokuyama |
Distribution of Distances and Triangles in Point Sets and Its Application to Largest Common Point Set Problems |
Distribution of Distances and Triangles in Point Sets and Its Application to Largest Common Point Set Problems |
Distribution of Distances and Triangles in Point Sets and Its Application to Largest Common Point Set Problems |
Proc. 13th ACM Symposium on Computational Geometry, 314-323 |
Proc. 13th ACM Symposium on Computational Geometry, 314-323 |
Proc. 13th ACM Symposium on Computational Geometry, 314-323 |
1997/06 |
Refereed |
English |
Research paper(international conference proceedings) |
Disclose to all |
T Akutsu |
T Akutsu |
T Akutsu |
Protein structure alignment using dynamic programming and iterative improvement |
Protein structure alignment using dynamic programming and iterative improvement |
Protein structure alignment using dynamic programming and iterative improvement |
IEICE TRANSACTIONS ON INFORMATION AND SYSTEMS, E79D, 12, 1629-1636 |
IEICE TRANSACTIONS ON INFORMATION AND SYSTEMS, E79D, 12, 1629-1636 |
IEICE TRANSACTIONS ON INFORMATION AND SYSTEMS, E79D, 12, 1629-1636 |
1996/12 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |
Tatsuya Akutsu, Atsuhiro Takasu |
Tatsuya Akutsu, Atsuhiro Takasu |
Tatsuya Akutsu, Atsuhiro Takasu |
On PAC learnability of functional dependencies |
On PAC learnability of functional dependencies |
On PAC learnability of functional dependencies |
New Generation Computing, 12, 4, 359-374 |
New Generation Computing, 12, 4, 359-374 |
New Generation Computing, 12, 4, 359-374 |
1994/12 |
Refereed |
English |
Research paper(scientific journal) |
Disclose to all |