阿久津達也

Last Update: 2020/10/30 10:46:21

Name(Kanji/Kana/Abecedarium Latinum)

阿久津達也/アクツタツヤ/Akutsu, Tatsuya

Primary Affiliation(Org1/Job title)

Institute for Chemical Research (ICR)/Professor

Affiliated programs (koza)

Org1	Job title
Graduate Schools Informatics	Professor

Academic Organizations You are Affiliated to in Japan

Organization name(Japanese)	Organization name(English)
日本バイオインフォマティクス学会	Japanese Society for Bioinformatics
情報処理学会	Information Processing Society of Japan
電子情報通信学会	Institute of Electronics, Information and. Communication Engineers
人工知能学会	Japanese Society for Artificial Intelligence
日本生物物理学会	Biophysical Society of Japan

Academic Organizations Overaseas You are Affiliated to

Organization name	Country
Association for Computing Machinery	米国
IEEE	米国

Academic Degree

Field(Japanese)	Field(English)	University(Japanese)	University(English)	Method
工学博士		東京大学

Graduate School

University(Japanese)	University(English)	Faculty(Japanese)	Faculty(English)	Major(Japanese)	Major(English)	Degree
東京大学		大学院工学系研究科情報工学専攻博士課程				修了
東京大学		大学院工学系研究科航空学専攻修士課程				修了

Undergraduate School / Major(s)

University(Japanese)	University(English)	Faculty(Japanese)	Faculty(English)	Major(s)(Japanese)	Major(s)(English)	Degree
東京大学		工学部航空学科				卒業

High School

Highschool	Kana
栃木県立宇都宮高等学校	とちぎけんりつうつのみやこうとうがっこう

Work Experience

Period	Organization(Japanese)	Organization(English)	Job title(Japanese)	Job title(English)
1989/04/01-1994/03/31	通商産業省工業技術院機械技術研究所	Mechanical Engineering Laboratory, AIST, MITI	研究員	Researcher
1994/04/01-1996/03/31	群馬大学工学部情報工学科	Dept. Computer Science, Faculty of Engineering, Gunma University	助教授	Associate Professor
1996/04/01-2001/09/30	東京大学医科学研究所ヒトゲノム解析センター	Human Genome Center, Institute of Medical Science, University of Tokyo	助教授	Associate Professor
2001/10/01-	京都大学化学研究所バイオインフォマティクスセンター	Bioinformatics Center, Institute for Chemical Research, Kyoto University	教授	Professor

Personal Profile

(Japanese)
1989年東京大学大学院工学系研究科博士課程修了。工学博士。通産省機械技術研究所、群馬大学、東京大学医科学研究所を経て、2001年より京都大学化学研究所バイオインフォマティクスセンター教授（情報学研究科知能情報学専攻協力講座）。専門はバイオインフォマティクスおよび計算システム生物学。遺伝子ネットワーク、タンパク質相互作用ネットワークなどの数理モデルや情報解析手法の研究を行っている。主著に「バイオインフォマティクスの数理とアルゴリズム」（共立出版 2007年）がある。情報処理学会、日本バイオインフォマティクス学会など会員。
(English)
Tatsuya Akutsu received his M. Eng degree in Aeronautics in 1986 and a Dr. Eng. degree in Information Engineering in 1989 both from University of Tokyo, Japan. After working in Mechanical Engineering Laboratory, Gunma University, and Human Genome Center of the University of Tokyo, he joined Bioinformatics Center, Institute for Chemical Research, Kyoto University, Japan as a professor in Oct. 2001. His research interests include bioinformatics and computational systems biology.

Language of Instruction

Language(japanese)	Language(english)	Code
英語	English	eng

Personal Website(s) (URL(s))

URL
http://www.bic.kyoto-u.ac.jp/takutsu/members/takutsu/japanese.html

ORCID ID

https://orcid.org/0000-0001-9763-797X

researchmap URL

https://researchmap.jp/7000008292

Research Topics

(Japanese)
バイオインフォマティクス、複雑ネットワーク、離散アルゴリズム
(English)
Bioinformatics, Complex Networks, Discrete Algorithms

Overview of the research

(Japanese)
バイオインフォマティクスおよびシステム生物学を対象に、情報科学および数理科学の観点を中心に、理論から実際に利用可能なシステムの構築に至るまで、研究・開発に取り組んでいます。
(English)
We study mathematical models and algorithms for analyzing biological sequences, structures, networks, and systems.

Fields of research (key words)

Key words(Japanese)	Key words(English)
バイオインフォマティクス	bioinformatics
離散アルゴリズム	discrete algorithms
複雑ネットワーク	complex networks

Published Papers

Author	Author(Japanese)	Author(English)	Title	Title(Japanese)	Title(English)	Bibliography	Bibliography(Japanese)	Bibliography(English)	Publication date	Refereed paper	Language	Publishing type	Disclose
Fan Zhang, Jianshen Zhu, Rachaya Chiewvanichakorn, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu	Fan Zhang, Jianshen Zhu, Rachaya Chiewvanichakorn, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu	Fan Zhang, Jianshen Zhu, Rachaya Chiewvanichakorn, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu	A New Integer Linear Programming Formulation to the Inverse QSAR/QSPR for Acyclic Chemical Compounds Using Skeleton Trees.	A New Integer Linear Programming Formulation to the Inverse QSAR/QSPR for Acyclic Chemical Compounds Using Skeleton Trees.	A New Integer Linear Programming Formulation to the Inverse QSAR/QSPR for Acyclic Chemical Compounds Using Skeleton Trees.	Proc. 33rd International Conference on Industrial, Engineering and Other Applications of Applied Intelligent Systems (IEA/AIE 2020), 433-444	Proc. 33rd International Conference on Industrial, Engineering and Other Applications of Applied Intelligent Systems (IEA/AIE 2020), 433-444	Proc. 33rd International Conference on Industrial, Engineering and Other Applications of Applied Intelligent Systems (IEA/AIE 2020), 433-444	2020/09	Refereed		Research paper(international conference proceedings)	Disclose to all
Zhen Chen 0009, Pei Zhao, Fuyi Li, Yanan Wang, Alexander Ian Smith, Geoffrey I. Webb, Tatsuya Akutsu, Abdelkader Baggag, Halima Bensmail, Jiangning Song	Zhen Chen 0009, Pei Zhao, Fuyi Li, Yanan Wang, Alexander Ian Smith, Geoffrey I. Webb, Tatsuya Akutsu, Abdelkader Baggag, Halima Bensmail, Jiangning Song	Zhen Chen 0009, Pei Zhao, Fuyi Li, Yanan Wang, Alexander Ian Smith, Geoffrey I. Webb, Tatsuya Akutsu, Abdelkader Baggag, Halima Bensmail, Jiangning Song	Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences.	Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences.	Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences.	Briefings Bioinform., 21, 5, 1676-1696	Briefings Bioinform., 21, 5, 1676-1696	Briefings Bioinform., 21, 5, 1676-1696	2020/09	Refereed		Research paper(scientific journal)	Disclose to all
Weifeng Guo, Shaowu Zhang 0001, Tao Zeng, Tatsuya Akutsu, Luonan Chen	Weifeng Guo, Shaowu Zhang 0001, Tao Zeng, Tatsuya Akutsu, Luonan Chen	Weifeng Guo, Shaowu Zhang 0001, Tao Zeng, Tatsuya Akutsu, Luonan Chen	Network control principles for identifying personalized driver genes in cancer.	Network control principles for identifying personalized driver genes in cancer.	Network control principles for identifying personalized driver genes in cancer.	Briefings Bioinform., 21, 5, 1641-1662	Briefings Bioinform., 21, 5, 1641-1662	Briefings Bioinform., 21, 5, 1641-1662	2020/09	Refereed		Research paper(scientific journal)	Disclose to all
Wang F, Akutsu T, Mori T	Wang F, Akutsu T, Mori T	Wang F, Akutsu T, Mori T	Comparison of pseudoknotted RNA secondary structures by topological centroid identification and tree edit distance	Comparison of pseudoknotted RNA secondary structures by topological centroid identification and tree edit distance	Comparison of pseudoknotted RNA secondary structures by topological centroid identification and tree edit distance	Journal of Computational Biology, 27, 1-9	Journal of Computational Biology, 27, 1-9	Journal of Computational Biology, 27, 1-9	2020/09	Refereed	English	Research paper(scientific journal)	Disclose to all
Shutao Mei, Fuyi Li, André Leier, Tatiana T. Marquez-Lago, Kailin Giam, Nathan P. Croft, Tatsuya Akutsu, Alexander Ian Smith, Jian Li, Jamie Rossjohn, Anthony W. Purcell, Jiangning Song	Shutao Mei, Fuyi Li, André Leier, Tatiana T. Marquez-Lago, Kailin Giam, Nathan P. Croft, Tatsuya Akutsu, Alexander Ian Smith, Jian Li, Jamie Rossjohn, Anthony W. Purcell, Jiangning Song	Shutao Mei, Fuyi Li, André Leier, Tatiana T. Marquez-Lago, Kailin Giam, Nathan P. Croft, Tatsuya Akutsu, Alexander Ian Smith, Jian Li, Jamie Rossjohn, Anthony W. Purcell, Jiangning Song	A comprehensive review and performance evaluation of bioinformatics tools for HLA class I peptide-binding prediction.	A comprehensive review and performance evaluation of bioinformatics tools for HLA class I peptide-binding prediction.	A comprehensive review and performance evaluation of bioinformatics tools for HLA class I peptide-binding prediction.	Briefings Bioinform., 21, 4, 1119-1135	Briefings Bioinform., 21, 4, 1119-1135	Briefings Bioinform., 21, 4, 1119-1135	2020/07	Refereed		Research paper(scientific journal)	Disclose to all
Pengyu Liu, Avraham A. Melkman, Tatsuya Akutsu	Pengyu Liu, Avraham A. Melkman, Tatsuya Akutsu	Pengyu Liu, Avraham A. Melkman, Tatsuya Akutsu	Extracting boolean and probabilistic rules from trained neural networks.	Extracting boolean and probabilistic rules from trained neural networks.	Extracting boolean and probabilistic rules from trained neural networks.	Neural Networks, 126, 300-311	Neural Networks, 126, 300-311	Neural Networks, 126, 300-311	2020/06	Refereed		Research paper(scientific journal)	Disclose to all
Zhen Chen 0009, Pei Zhao, Fuyi Li, Tatiana T. Marquez-Lago, André Leier, Jerico Nico De Leon Revote, Yan Zhu, David R. Powell, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Alexander Ian Smith, Roger J. Daly, Jian Li 0052, Jiangning Song	Zhen Chen 0009, Pei Zhao, Fuyi Li, Tatiana T. Marquez-Lago, André Leier, Jerico Nico De Leon Revote, Yan Zhu, David R. Powell, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Alexander Ian Smith, Roger J. Daly, Jian Li 0052, Jiangning Song	Zhen Chen 0009, Pei Zhao, Fuyi Li, Tatiana T. Marquez-Lago, André Leier, Jerico Nico De Leon Revote, Yan Zhu, David R. Powell, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Alexander Ian Smith, Roger J. Daly, Jian Li 0052, Jiangning Song	iLearn : an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data.	iLearn : an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data.	iLearn : an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data.	Briefings Bioinform., 21, 3, 1047-1057	Briefings Bioinform., 21, 3, 1047-1057	Briefings Bioinform., 21, 3, 1047-1057	2020/05	Refereed		Research paper(scientific journal)	Disclose to all
Jianshen Zhu, Chenxi Wang, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu	Jianshen Zhu, Chenxi Wang, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu	Jianshen Zhu, Chenxi Wang, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu	A Novel Method for Inference of Chemical Compounds of Cycle Index Two with Desired Properties Based on Artificial Neural Networks and Integer Programming.	A Novel Method for Inference of Chemical Compounds of Cycle Index Two with Desired Properties Based on Artificial Neural Networks and Integer Programming.	A Novel Method for Inference of Chemical Compounds of Cycle Index Two with Desired Properties Based on Artificial Neural Networks and Integer Programming.	Algorithms, 13, 5, 124-124	Algorithms, 13, 5, 124-124	Algorithms, 13, 5, 124-124	2020/05	Refereed		Research paper(scientific journal)	Disclose to all
Fuyi Li, André Leier, Quanzhong Liu, Yanan Wang, Dongxu Xiang, Tatsuya Akutsu, Geoffrey I. Webb, Alexander Ian Smith, Tatiana T. Marquez-Lago, Jian Li 0052, Jiangning Song	Fuyi Li, André Leier, Quanzhong Liu, Yanan Wang, Dongxu Xiang, Tatsuya Akutsu, Geoffrey I. Webb, Alexander Ian Smith, Tatiana T. Marquez-Lago, Jian Li 0052, Jiangning Song	Fuyi Li, André Leier, Quanzhong Liu, Yanan Wang, Dongxu Xiang, Tatsuya Akutsu, Geoffrey I. Webb, Alexander Ian Smith, Tatiana T. Marquez-Lago, Jian Li 0052, Jiangning Song	Procleave: Predicting Protease-specific Substrate Cleavage Sites by Combining Sequence and Structural Information.	Procleave: Predicting Protease-specific Substrate Cleavage Sites by Combining Sequence and Structural Information.	Procleave: Predicting Protease-specific Substrate Cleavage Sites by Combining Sequence and Structural Information.	Genom. Proteom. Bioinform., 18, 1, 52-64	Genom. Proteom. Bioinform., 18, 1, 52-64	Genom. Proteom. Bioinform., 18, 1, 52-64	2020/02	Refereed		Research paper(scientific journal)	Disclose to all
Naveed Azam, Rachaya Chiewvanichakorn, Fan Zhang, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu		Naveed Azam, Rachaya Chiewvanichakorn, Fan Zhang, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu	A Novel Method for the Inverse QSAR/QSPR based on Artificial Neural Networks and Mixed Integer Linear Programming with Guaranteed Admissibility	A Novel Method for the Inverse QSAR/QSPR based on Artificial Neural Networks and Mixed Integer Linear Programming with Guaranteed Admissibility	A Novel Method for the Inverse QSAR/QSPR based on Artificial Neural Networks and Mixed Integer Linear Programming with Guaranteed Admissibility	Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies, 101-108	Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies, 101-108	Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies, 101-108	2020/02	Refereed		Research paper(international conference proceedings)	Disclose to all
Fuyi Li, Jinxiang Chen, André Leier, Tatiana T. Marquez-Lago, Quanzhong Liu, Yanze Wang, Jerico Nico De Leon Revote, Alexander Ian Smith, Tatsuya Akutsu, Geoffrey I. Webb, Lukasz A. Kurgan, Jiangning Song	Fuyi Li, Jinxiang Chen, André Leier, Tatiana T. Marquez-Lago, Quanzhong Liu, Yanze Wang, Jerico Nico De Leon Revote, Alexander Ian Smith, Tatsuya Akutsu, Geoffrey I. Webb, Lukasz A. Kurgan, Jiangning Song	Fuyi Li, Jinxiang Chen, André Leier, Tatiana T. Marquez-Lago, Quanzhong Liu, Yanze Wang, Jerico Nico De Leon Revote, Alexander Ian Smith, Tatsuya Akutsu, Geoffrey I. Webb, Lukasz A. Kurgan, Jiangning Song	DeepCleave: a deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites.	DeepCleave: a deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites.	DeepCleave: a deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites.	Bioinform., 36, 4, 1057-1065	Bioinform., 36, 4, 1057-1065	Bioinform., 36, 4, 1057-1065	2020/02	Refereed		Research paper(scientific journal)	Disclose to all
Yanju Zhang, Sha Yu, Ruopeng Xie, Jiahui Li, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Alexander Ian Smith, Zongyuan Ge, Jiawei Wang, Trevor Lithgow, Jiangning Song	Yanju Zhang, Sha Yu, Ruopeng Xie, Jiahui Li, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Alexander Ian Smith, Zongyuan Ge, Jiawei Wang, Trevor Lithgow, Jiangning Song	Yanju Zhang, Sha Yu, Ruopeng Xie, Jiahui Li, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Alexander Ian Smith, Zongyuan Ge, Jiawei Wang, Trevor Lithgow, Jiangning Song	PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins.	PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins.	PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins.	Bioinform., 36, 3, 704-712	Bioinform., 36, 3, 704-712	Bioinform., 36, 3, 704-712	2020/02	Refereed		Research paper(scientific journal)	Disclose to all
Rachaya Chiewvanichakorn, Chenxi Wang, Zhe Zhang, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu	Rachaya Chiewvanichakorn, Chenxi Wang, Zhe Zhang, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu	Rachaya Chiewvanichakorn, Chenxi Wang, Zhe Zhang, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu	A Method for the Inverse QSAR/QSPR Based on Artificial Neural Networks and Mixed Integer Linear Programming	A Method for the Inverse QSAR/QSPR Based on Artificial Neural Networks and Mixed Integer Linear Programming	A Method for the Inverse QSAR/QSPR Based on Artificial Neural Networks and Mixed Integer Linear Programming	Proceedings of the 2020 10th International Conference on Bioscience, Biochemistry and Bioinformatics	Proceedings of the 2020 10th International Conference on Bioscience, Biochemistry and Bioinformatics	Proceedings of the 2020 10th International Conference on Bioscience, Biochemistry and Bioinformatics	2020/01/19	Refereed		Research paper(international conference proceedings)	Disclose to all
Shogo Nakashima, Jose C Nacher, Jiangning Song, Tatsuya Akutsu	Shogo Nakashima, Jose C Nacher, Jiangning Song, Tatsuya Akutsu	Shogo Nakashima, Jose C Nacher, Jiangning Song, Tatsuya Akutsu	An Overview of Bioinformatics Methods for Analyzing Autism Spectrum Disorders.	An Overview of Bioinformatics Methods for Analyzing Autism Spectrum Disorders.	An Overview of Bioinformatics Methods for Analyzing Autism Spectrum Disorders.	Current pharmaceutical design, 25, 43, 4552-4559	Current pharmaceutical design, 25, 43, 4552-4559	Current pharmaceutical design, 25, 43, 4552-4559	2020	Refereed	English	Research paper(scientific journal)	Disclose to all
Tatsuya Akutsu, Avraham A. Melkman, Takeyuki Tamura	Tatsuya Akutsu, Avraham A. Melkman, Takeyuki Tamura	Tatsuya Akutsu, Avraham A. Melkman, Takeyuki Tamura	Improved Hardness of Maximum Common Subgraph Problems on Labeled Graphs of Bounded Treewidth and Bounded Degree.	Improved Hardness of Maximum Common Subgraph Problems on Labeled Graphs of Bounded Treewidth and Bounded Degree.	Improved Hardness of Maximum Common Subgraph Problems on Labeled Graphs of Bounded Treewidth and Bounded Degree.	Int. J. Found. Comput. Sci., 31, 2, 253-273	Int. J. Found. Comput. Sci., 31, 2, 253-273	Int. J. Found. Comput. Sci., 31, 2, 253-273	2020	Refereed		Research paper(scientific journal)	Disclose to all
Saori Itami-Matsumoto, Michiyo Hayakawa, Sawako Uchida-Kobayashi, Masaru Enomoto, Akihiro Tamori, Kazuyuki Mizuno, Hidenori Toyoda, Takeyuki Tamura, Tatsuya Akutsu, Takahiro Ochiya, Norifumi Kawada, Yoshiki Murakami	Saori Itami-Matsumoto, Michiyo Hayakawa, Sawako Uchida-Kobayashi, Masaru Enomoto, Akihiro Tamori, Kazuyuki Mizuno, Hidenori Toyoda, Takeyuki Tamura, Tatsuya Akutsu, Takahiro Ochiya, Norifumi Kawada, Yoshiki Murakami	Saori Itami-Matsumoto, Michiyo Hayakawa, Sawako Uchida-Kobayashi, Masaru Enomoto, Akihiro Tamori, Kazuyuki Mizuno, Hidenori Toyoda, Takeyuki Tamura, Tatsuya Akutsu, Takahiro Ochiya, Norifumi Kawada, Yoshiki Murakami	Circulating Exosomal miRNA Profiles Predict the Occurrence and Recurrence of Hepatocellular Carcinoma in Patients with Direct-Acting Antiviral-Induced Sustained Viral Response.	Circulating Exosomal miRNA Profiles Predict the Occurrence and Recurrence of Hepatocellular Carcinoma in Patients with Direct-Acting Antiviral-Induced Sustained Viral Response.	Circulating Exosomal miRNA Profiles Predict the Occurrence and Recurrence of Hepatocellular Carcinoma in Patients with Direct-Acting Antiviral-Induced Sustained Viral Response.	Biomedicines, 7, 4	Biomedicines, 7, 4	Biomedicines, 7, 4	2019/11/03	Refereed	English		Disclose to all
Akutsu T, Melkman AA	Akutsu T, Melkman AA	Akutsu T, Melkman AA	Identification of the Structure of a Probabilistic Boolean Network From Samples Including Frequencies of Outcomes.	Identification of the Structure of a Probabilistic Boolean Network From Samples Including Frequencies of Outcomes.	Identification of the Structure of a Probabilistic Boolean Network From Samples Including Frequencies of Outcomes.	IEEE transactions on neural networks and learning systems, 30, 8, 2383-2396	IEEE transactions on neural networks and learning systems, 30, 8, 2383-2396	IEEE transactions on neural networks and learning systems, 30, 8, 2383-2396	2019/08	Refereed			Disclose to all
Matsubara T, Ochiai T, Hayashida M, Akutsu T, Nacher JC	Matsubara T, Ochiai T, Hayashida M, Akutsu T, Nacher JC	Matsubara T, Ochiai T, Hayashida M, Akutsu T, Nacher JC	Convolutional neural network approach to lung cancer classification integrating protein interaction network and gene expression profiles.	Convolutional neural network approach to lung cancer classification integrating protein interaction network and gene expression profiles.	Convolutional neural network approach to lung cancer classification integrating protein interaction network and gene expression profiles.	Journal of bioinformatics and computational biology, 17, 3, 1940007	Journal of bioinformatics and computational biology, 17, 3, 1940007	Journal of bioinformatics and computational biology, 17, 3, 1940007	2019/06	Refereed			Disclose to all
Lin CY, Ruan P, Li R, Yang JM, See S, Song J, Akutsu T	Lin CY, Ruan P, Li R, Yang JM, See S, Song J, Akutsu T	Lin CY, Ruan P, Li R, Yang JM, See S, Song J, Akutsu T	Deep learning with evolutionary and genomic profiles for identifying cancer subtypes.	Deep learning with evolutionary and genomic profiles for identifying cancer subtypes.	Deep learning with evolutionary and genomic profiles for identifying cancer subtypes.	Journal of bioinformatics and computational biology, 17, 3, 1940005	Journal of bioinformatics and computational biology, 17, 3, 1940005	Journal of bioinformatics and computational biology, 17, 3, 1940005	2019/06	Refereed			Disclose to all
Schwartz JM, Otokuni H, Akutsu T, Nacher JC	Schwartz JM, Otokuni H, Akutsu T, Nacher JC	Schwartz JM, Otokuni H, Akutsu T, Nacher JC	Probabilistic controllability approach to metabolic fluxes in normal and cancer tissues.	Probabilistic controllability approach to metabolic fluxes in normal and cancer tissues.	Probabilistic controllability approach to metabolic fluxes in normal and cancer tissues.	Nature communications, 10, 1, 2725	Nature communications, 10, 1, 2725	Nature communications, 10, 1, 2725	2019/06	Refereed			Disclose to all
Hou W, Ruan P, Ching WK, Akutsu T	Hou W, Ruan P, Ching WK, Akutsu T	Hou W, Ruan P, Ching WK, Akutsu T	On the number of driver nodes for controlling a Boolean network when the targets are restricted to attractors.	On the number of driver nodes for controlling a Boolean network when the targets are restricted to attractors.	On the number of driver nodes for controlling a Boolean network when the targets are restricted to attractors.	Journal of theoretical biology, 463, 1-11	Journal of theoretical biology, 463, 1-11	Journal of theoretical biology, 463, 1-11	2019/02	Refereed			Disclose to all
Ravindran V, Nacher JC, Akutsu T, Ishitsuka M, Osadcenco A, Sunitha V, Bagler G, Schwartz JM, Robertson DL	Ravindran V, Nacher JC, Akutsu T, Ishitsuka M, Osadcenco A, Sunitha V, Bagler G, Schwartz JM, Robertson DL	Ravindran V, Nacher JC, Akutsu T, Ishitsuka M, Osadcenco A, Sunitha V, Bagler G, Schwartz JM, Robertson DL	Network controllability analysis of intracellular signalling reveals viruses are actively controlling molecular systems.	Network controllability analysis of intracellular signalling reveals viruses are actively controlling molecular systems.	Network controllability analysis of intracellular signalling reveals viruses are actively controlling molecular systems.	Scientific reports, 9, 1, 2066	Scientific reports, 9, 1, 2066	Scientific reports, 9, 1, 2066	2019/02	Refereed			Disclose to all
Array,Morihiro Hayashida, Tatsuya Akutsu	Array,Morihiro Hayashida, Tatsuya Akutsu	Array,Morihiro Hayashida, Tatsuya Akutsu	Optimal string clustering based on a Laplace-like mixture and EM algorithm on a set of strings.	Optimal string clustering based on a Laplace-like mixture and EM algorithm on a set of strings.	Optimal string clustering based on a Laplace-like mixture and EM algorithm on a set of strings.	J. Comput. Syst. Sci., 106, 94-128	J. Comput. Syst. Sci., 106, 94-128	J. Comput. Syst. Sci., 106, 94-128	2019	Refereed			Disclose to all
Jiawei Wang, Bingjiao Yang, Yi An, Tatiana T. Marquez-Lago, André Leier, Jonathan Wilksch, Qingyang Hong, Yang Zhang 0010, Morihiro Hayashida, Tatsuya Akutsu, Geoffrey I. Webb, Richard A. Strugnell, Jiangning Song, Trevor Lithgow	Jiawei Wang, Bingjiao Yang, Yi An, Tatiana T. Marquez-Lago, André Leier, Jonathan Wilksch, Qingyang Hong, Yang Zhang 0010, Morihiro Hayashida, Tatsuya Akutsu, Geoffrey I. Webb, Richard A. Strugnell, Jiangning Song, Trevor Lithgow	Jiawei Wang, Bingjiao Yang, Yi An, Tatiana T. Marquez-Lago, André Leier, Jonathan Wilksch, Qingyang Hong, Yang Zhang 0010, Morihiro Hayashida, Tatsuya Akutsu, Geoffrey I. Webb, Richard A. Strugnell, Jiangning Song, Trevor Lithgow	Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches.	Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches.	Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches.	Briefings Bioinform., 20, 3, 931-951	Briefings Bioinform., 20, 3, 931-951	Briefings Bioinform., 20, 3, 931-951	2019	Refereed		Research paper(scientific journal)	Disclose to all
Jiangning Song, Yanan Wang, Fuyi Li, Tatsuya Akutsu, Neil D. Rawlings, Geoffrey I. Webb, Kuo-Chen Chou	Jiangning Song, Yanan Wang, Fuyi Li, Tatsuya Akutsu, Neil D. Rawlings, Geoffrey I. Webb, Kuo-Chen Chou	Jiangning Song, Yanan Wang, Fuyi Li, Tatsuya Akutsu, Neil D. Rawlings, Geoffrey I. Webb, Kuo-Chen Chou	iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites.	iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites.	iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites.	Briefings Bioinform., 20, 2, 638-658	Briefings Bioinform., 20, 2, 638-658	Briefings Bioinform., 20, 2, 638-658	2019	Refereed		Research paper(scientific journal)	Disclose to all
Jiawei Wang, Jiahui Li, Bingjiao Yang, Ruopeng Xie, Tatiana T. Marquez-Lago, André Leier, Morihiro Hayashida, Tatsuya Akutsu, Yanju Zhang, Kuo-Chen Chou, Joel Selkrig, Tieli Zhou, Jiangning Song, Trevor Lithgow	Jiawei Wang, Jiahui Li, Bingjiao Yang, Ruopeng Xie, Tatiana T. Marquez-Lago, André Leier, Morihiro Hayashida, Tatsuya Akutsu, Yanju Zhang, Kuo-Chen Chou, Joel Selkrig, Tieli Zhou, Jiangning Song, Trevor Lithgow	Jiawei Wang, Jiahui Li, Bingjiao Yang, Ruopeng Xie, Tatiana T. Marquez-Lago, André Leier, Morihiro Hayashida, Tatsuya Akutsu, Yanju Zhang, Kuo-Chen Chou, Joel Selkrig, Tieli Zhou, Jiangning Song, Trevor Lithgow	Bastion3: a two-layer ensemble predictor of type III secreted effectors.	Bastion3: a two-layer ensemble predictor of type III secreted effectors.	Bastion3: a two-layer ensemble predictor of type III secreted effectors.	Bioinform., 35, 12, 2017-2028	Bioinform., 35, 12, 2017-2028	Bioinform., 35, 12, 2017-2028	2019	Refereed		Research paper(scientific journal)	Disclose to all
Jingwen Zeng, Hongmin Cai, Hong Peng, Haiyan Wang, Yue Zhang, Tatsuya Akutsu	Jingwen Zeng, Hongmin Cai, Hong Peng, Haiyan Wang, Yue Zhang, Tatsuya Akutsu	Jingwen Zeng, Hongmin Cai, Hong Peng, Haiyan Wang, Yue Zhang, Tatsuya Akutsu	Causalcall: Nanopore Basecalling Using a Temporal Convolutional Network.	Causalcall: Nanopore Basecalling Using a Temporal Convolutional Network.	Causalcall: Nanopore Basecalling Using a Temporal Convolutional Network.	Frontiers in genetics, 10, 1332-1332	Frontiers in genetics, 10, 1332-1332	Frontiers in genetics, 10, 1332-1332	2019	Refereed	English	Research paper(scientific journal)	Disclose to all
Zhen Chen, Xuhan Liu, Fuyi Li, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Tatsuya Akutsu, Geoffrey I. Webb, Dakang Xu, Alexander Ian Smith, Lei Li 0013, Kuo-Chen Chou, Jiangning Song	Zhen Chen, Xuhan Liu, Fuyi Li, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Tatsuya Akutsu, Geoffrey I. Webb, Dakang Xu, Alexander Ian Smith, Lei Li 0013, Kuo-Chen Chou, Jiangning Song	Zhen Chen, Xuhan Liu, Fuyi Li, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Tatsuya Akutsu, Geoffrey I. Webb, Dakang Xu, Alexander Ian Smith, Lei Li 0013, Kuo-Chen Chou, Jiangning Song	Large-scale comparative assessment of computational predictors for lysine post-translational modification sites.	Large-scale comparative assessment of computational predictors for lysine post-translational modification sites.	Large-scale comparative assessment of computational predictors for lysine post-translational modification sites.	Briefings Bioinform., 20, 6, 2267-2290	Briefings Bioinform., 20, 6, 2267-2290	Briefings Bioinform., 20, 6, 2267-2290	2019	Refereed		Research paper(scientific journal)	Disclose to all
Yanju Zhang, Ruopeng Xie, Jiawei Wang, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Jiangning Song	Yanju Zhang, Ruopeng Xie, Jiawei Wang, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Jiangning Song	Yanju Zhang, Ruopeng Xie, Jiawei Wang, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Jiangning Song	Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework.	Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework.	Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework.	Briefings Bioinform., 20, 6, 2185-2199	Briefings Bioinform., 20, 6, 2185-2199	Briefings Bioinform., 20, 6, 2185-2199	2019	Refereed		Research paper(scientific journal)	Disclose to all
Fuyi Li, Yanan Wang, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Neil D. Rawlings, Gholamreza Haffari, Jerico Nico De Leon Revote, Tatsuya Akutsu, Kuo-Chen Chou, Anthony W. Purcell, Robert N. Pike, Geoffrey I. Webb, Alexander Ian Smith, Trevor Lithgow, Roger J. Daly, James C. Whisstock, Jiangning Song	Fuyi Li, Yanan Wang, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Neil D. Rawlings, Gholamreza Haffari, Jerico Nico De Leon Revote, Tatsuya Akutsu, Kuo-Chen Chou, Anthony W. Purcell, Robert N. Pike, Geoffrey I. Webb, Alexander Ian Smith, Trevor Lithgow, Roger J. Daly, James C. Whisstock, Jiangning Song	Fuyi Li, Yanan Wang, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Neil D. Rawlings, Gholamreza Haffari, Jerico Nico De Leon Revote, Tatsuya Akutsu, Kuo-Chen Chou, Anthony W. Purcell, Robert N. Pike, Geoffrey I. Webb, Alexander Ian Smith, Trevor Lithgow, Roger J. Daly, James C. Whisstock, Jiangning Song	Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods.	Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods.	Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods.	Briefings Bioinform., 20, 6, 2150-2166	Briefings Bioinform., 20, 6, 2150-2166	Briefings Bioinform., 20, 6, 2150-2166	2019	Refereed		Research paper(scientific journal)	Disclose to all
Yu Bao, Simone Marini, Takeyuki Tamura, Mayumi Kamada, Shingo Maegawa, Hiroshi Hosokawa, Jiangning Song, Tatsuya Akutsu	Yu Bao, Simone Marini, Takeyuki Tamura, Mayumi Kamada, Shingo Maegawa, Hiroshi Hosokawa, Jiangning Song, Tatsuya Akutsu	Yu Bao, Simone Marini, Takeyuki Tamura, Mayumi Kamada, Shingo Maegawa, Hiroshi Hosokawa, Jiangning Song, Tatsuya Akutsu	Toward more accurate prediction of caspase cleavage sites: a comprehensive review of current methods, tools and features.	Toward more accurate prediction of caspase cleavage sites: a comprehensive review of current methods, tools and features.	Toward more accurate prediction of caspase cleavage sites: a comprehensive review of current methods, tools and features.	Briefings Bioinform., 20, 5, 1669-1684	Briefings Bioinform., 20, 5, 1669-1684	Briefings Bioinform., 20, 5, 1669-1684	2019	Refereed	English	Research paper(scientific journal)	Disclose to all
Nishiyama Y, Shurbevski A, Nagamochi H, Akutsu T	Nishiyama Y, Shurbevski A, Nagamochi H, Akutsu T	Nishiyama Y, Shurbevski A, Nagamochi H, Akutsu T	Resource Cut, a New Bounding Procedure to Algorithms for Enumerating Tree-Like Chemical Graphs.	Resource Cut, a New Bounding Procedure to Algorithms for Enumerating Tree-Like Chemical Graphs.	Resource Cut, a New Bounding Procedure to Algorithms for Enumerating Tree-Like Chemical Graphs.	IEEE/ACM transactions on computational biology and bioinformatics, 16, 1, 77-90	IEEE/ACM transactions on computational biology and bioinformatics, 16, 1, 77-90	IEEE/ACM transactions on computational biology and bioinformatics, 16, 1, 77-90	2019/01	Refereed			Disclose to all
Simone Marini, Francesca Vitali, Sara Rampazzi, Andrea Demartini, Tatsuya Akutsu	Simone Marini, Francesca Vitali, Sara Rampazzi, Andrea Demartini, Tatsuya Akutsu	Simone Marini, Francesca Vitali, Sara Rampazzi, Andrea Demartini, Tatsuya Akutsu	Protease target prediction via matrix factorization.	Protease target prediction via matrix factorization.	Protease target prediction via matrix factorization.	Bioinform., 35, 6, 923-929	Bioinform., 35, 6, 923-929	Bioinform., 35, 6, 923-929	2019	Refereed		Research paper(scientific journal)	Disclose to all
Nacher JC, Akutsu T	Nacher JC, Akutsu T	Nacher JC, Akutsu T	Controllability Methods for Identifying Associations Between Critical Control ncRNAs and Human Diseases.	Controllability Methods for Identifying Associations Between Critical Control ncRNAs and Human Diseases.	Controllability Methods for Identifying Associations Between Critical Control ncRNAs and Human Diseases.	Methods in molecular biology (Clifton, N.J.), 1912, 289-300	Methods in molecular biology (Clifton, N.J.), 1912, 289-300	Methods in molecular biology (Clifton, N.J.), 1912, 289-300	2019	Refereed			Disclose to all
Nacher JC, Ishitsuka M, Miyazaki S, Akutsu T	Nacher JC, Ishitsuka M, Miyazaki S, Akutsu T	Nacher JC, Ishitsuka M, Miyazaki S, Akutsu T	Finding and analysing the minimum set of driver nodes required to control multilayer networks.	Finding and analysing the minimum set of driver nodes required to control multilayer networks.	Finding and analysing the minimum set of driver nodes required to control multilayer networks.	Scientific reports, 9, 1, 576	Scientific reports, 9, 1, 576	Scientific reports, 9, 1, 576	2019/01	Refereed			Disclose to all
Li F, Li C, Marquez-Lago TT, Leier A, Akutsu T, Purcell AW, Ian Smith A, Lithgow T, Daly RJ, Song J, Chou KC	Li F, Li C, Marquez-Lago TT, Leier A, Akutsu T, Purcell AW, Ian Smith A, Lithgow T, Daly RJ, Song J, Chou KC	Li F, Li C, Marquez-Lago TT, Leier A, Akutsu T, Purcell AW, Ian Smith A, Lithgow T, Daly RJ, Song J, Chou KC	Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome.	Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome.	Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome.	Bioinformatics (Oxford, England), 34, 24, 4223-4231	Bioinformatics (Oxford, England), 34, 24, 4223-4231	Bioinformatics (Oxford, England), 34, 24, 4223-4231	2018/12	Refereed			Disclose to all
Tamura T, Lu W, Song J, Akutsu T	Tamura T, Lu W, Song J, Akutsu T	Tamura T, Lu W, Song J, Akutsu T	Computing Minimum Reaction Modifications in a Boolean Metabolic Network.	Computing Minimum Reaction Modifications in a Boolean Metabolic Network.	Computing Minimum Reaction Modifications in a Boolean Metabolic Network.	IEEE/ACM transactions on computational biology and bioinformatics, 15, 6, 1853-1862	IEEE/ACM transactions on computational biology and bioinformatics, 15, 6, 1853-1862	IEEE/ACM transactions on computational biology and bioinformatics, 15, 6, 1853-1862	2018/11	Refereed			Disclose to all
Tatsuya Akutsu, Colin De La Higuera, Takeyuki Tamura	Tatsuya Akutsu, Colin De La Higuera, Takeyuki Tamura	Tatsuya Akutsu, Colin De La Higuera, Takeyuki Tamura	A simple linear-time algorithm for computing the centroid and canonical form of a plane graph and its applications	A simple linear-time algorithm for computing the centroid and canonical form of a plane graph and its applications	A simple linear-time algorithm for computing the centroid and canonical form of a plane graph and its applications	Leibniz International Proceedings in Informatics, LIPIcs, 105, 101-1012	Leibniz International Proceedings in Informatics, LIPIcs, 105, 101-1012	Leibniz International Proceedings in Informatics, LIPIcs, 105, 101-1012	2018/05/01	Refereed	English	Research paper(international conference proceedings)	Disclose to all
Yuui Tamura, Hiroshi Nagamochi, Aleksandar Shurbevski, Tatsuya Akutsu	Yuui Tamura, Hiroshi Nagamochi, Aleksandar Shurbevski, Tatsuya Akutsu	Yuui Tamura, Hiroshi Nagamochi, Aleksandar Shurbevski, Tatsuya Akutsu	Enumerating chemical mono-block 3-augmented trees with two junctions	Enumerating chemical mono-block 3-augmented trees with two junctions	Enumerating chemical mono-block 3-augmented trees with two junctions	ACM International Conference Proceeding Series, 48-55	ACM International Conference Proceeding Series, 48-55	ACM International Conference Proceeding Series, 48-55	2018/01/18	Refereed	English	Research paper(international conference proceedings)	Disclose to all
Tatsuya Akutsu, Jesper Jansson,Ruiming Li, Atsuhiro Takasu, Takeyuki Tamura	Tatsuya Akutsu, Jesper Jansson,Ruiming Li, Atsuhiro Takasu, Takeyuki Tamura	Tatsuya Akutsu, Jesper Jansson,Ruiming Li, Atsuhiro Takasu, Takeyuki Tamura	New and Improved Algorithms for Unordered Tree Inclusion.	New and Improved Algorithms for Unordered Tree Inclusion.	New and Improved Algorithms for Unordered Tree Inclusion.	29th International Symposium on Algorithms and Computation, ISAAC 2018, December 16-19, 2018, Jiaoxi, Yilan, Taiwan, 27:1-27:12	29th International Symposium on Algorithms and Computation, ISAAC 2018, December 16-19, 2018, Jiaoxi, Yilan, Taiwan, 27:1-27:12	29th International Symposium on Algorithms and Computation, ISAAC 2018, December 16-19, 2018, Jiaoxi, Yilan, Taiwan, 27:1-27:12	2018	Refereed			Disclose to all
Yushan Qiu, Xiaoqing Cheng, Wai-Ki Ching, Hao Jiang, Tatsuya Akutsu	Yushan Qiu, Xiaoqing Cheng, Wai-Ki Ching, Hao Jiang, Tatsuya Akutsu	Yushan Qiu, Xiaoqing Cheng, Wai-Ki Ching, Hao Jiang, Tatsuya Akutsu	On Observability of Attractors in Boolean Networks	On Observability of Attractors in Boolean Networks	On Observability of Attractors in Boolean Networks	PROCEEDINGS 2015 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE, 263-266	PROCEEDINGS 2015 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE, 263-266	PROCEEDINGS 2015 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE, 263-266	2015	Refereed	English	Research paper(international conference proceedings)	Disclose to all
Jose C. Nacher, Tatsuya Akutsu	Jose C. Nacher, Tatsuya Akutsu	Jose C. Nacher, Tatsuya Akutsu	Analysis of critical and redundant nodes in controlling directed and undirected complex networks using dominating sets	Analysis of critical and redundant nodes in controlling directed and undirected complex networks using dominating sets	Analysis of critical and redundant nodes in controlling directed and undirected complex networks using dominating sets	Journal of Complex Networks, 2, 4, 394-412	Journal of Complex Networks, 2, 4, 394-412	Journal of Complex Networks, 2, 4, 394-412	2014	Refereed	English	Research paper(scientific journal)	Disclose to all
Natsu Nakajima, Tatsuya Akutsu	Natsu Nakajima, Tatsuya Akutsu	Natsu Nakajima, Tatsuya Akutsu	Network completion for static gene expression data	Network completion for static gene expression data	Network completion for static gene expression data	Advances in Bioinformatics, 2014	Advances in Bioinformatics, 2014	Advances in Bioinformatics, 2014	2014	Refereed	English	Research paper(scientific journal)	Disclose to all
Tatsuya Akutsu, Takeyuki Tamura	Tatsuya Akutsu, Takeyuki Tamura	Tatsuya Akutsu, Takeyuki Tamura	A polynomial-time algorithm for computing the maximum common connected edge subgraph of outerplanar graphs of bounded Degree	A polynomial-time algorithm for computing the maximum common connected edge subgraph of outerplanar graphs of bounded Degree	A polynomial-time algorithm for computing the maximum common connected edge subgraph of outerplanar graphs of bounded Degree	Algorithms, 6, 1, 119-135	Algorithms, 6, 1, 119-135	Algorithms, 6, 1, 119-135	2013	Refereed	English	Research paper(scientific journal)	Disclose to all
Tatsuya Akutsu, Takeyuki Tamura, Avraham A. Melkman, Atsuhiro Takasu	Tatsuya Akutsu, Takeyuki Tamura, Avraham A. Melkman, Atsuhiro Takasu	Tatsuya Akutsu, Takeyuki Tamura, Avraham A. Melkman, Atsuhiro Takasu	On the complexity of finding a largest common subtree of bounded degree	On the complexity of finding a largest common subtree of bounded degree	On the complexity of finding a largest common subtree of bounded degree	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 8070, 4-15	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 8070, 4-15	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 8070, 4-15	2013	Refereed	English	Research paper(international conference proceedings)	Disclose to all
J. C. Nacher, T. Akutsu	J. C. Nacher, T. Akutsu	J. C. Nacher, T. Akutsu	On the degree distribution of projected networks mapped from bipartite networks	On the degree distribution of projected networks mapped from bipartite networks	On the degree distribution of projected networks mapped from bipartite networks	Physica A: Statistical Mechanics and its Applications, 390, 23-24, 4636-4651	Physica A: Statistical Mechanics and its Applications, 390, 23-24, 4636-4651	Physica A: Statistical Mechanics and its Applications, 390, 23-24, 4636-4651	2011/11/01	Refereed	English	Research paper(scientific journal)	Disclose to all
J. C. Nacher, M. Hayashida, T. Akutsu	J. C. Nacher, M. Hayashida, T. Akutsu	J. C. Nacher, M. Hayashida, T. Akutsu	The role of internal duplication in the evolution of multi-domain proteins	The role of internal duplication in the evolution of multi-domain proteins	The role of internal duplication in the evolution of multi-domain proteins	BIOSYSTEMS, 101, 2, 127-135	BIOSYSTEMS, 101, 2, 127-135	BIOSYSTEMS, 101, 2, 127-135	2010/08	Refereed	English	Research paper(scientific journal)	Disclose to all
Jiangning Song, Kazuhiro Takemoto, Hongbin Shen, Hao Tan, M. Michael Gromiha, Tatsuya Akutsu	Jiangning Song, Kazuhiro Takemoto, Hongbin Shen, Hao Tan, M. Michael Gromiha, Tatsuya Akutsu	Jiangning Song, Kazuhiro Takemoto, Hongbin Shen, Hao Tan, M. Michael Gromiha, Tatsuya Akutsu	Prediction of protein folding rates from structural topology and complex network properties	Prediction of protein folding rates from structural topology and complex network properties	Prediction of protein folding rates from structural topology and complex network properties	IPSJ Transactions on Bioinformatics, 3, 40-53	IPSJ Transactions on Bioinformatics, 3, 40-53	IPSJ Transactions on Bioinformatics, 3, 40-53	2010	Refereed	English	Research paper(scientific journal)	Disclose to all
Tamura T, Takemoto K, Akutsu, T	Tamura T, Takemoto K, Akutsu, T	Tamura T, Takemoto K, Akutsu, T	Finding minimum reaction cuts of metabolic networks under a Boolean model using integer programming and feedback vertex sets	Finding minimum reaction cuts of metabolic networks under a Boolean model using integer programming and feedback vertex sets	Finding minimum reaction cuts of metabolic networks under a Boolean model using integer programming and feedback vertex sets	International Journal of Knowledge Discovery in Bioinformatics, 1, 1, 14-31	International Journal of Knowledge Discovery in Bioinformatics, 1, 1, 14-31	International Journal of Knowledge Discovery in Bioinformatics, 1, 1, 14-31	2010/01	Refereed			Disclose to all
J. C. Nacher, T. Ochiai, M. Hayashida, T. Akutsu	J. C. Nacher, T. Ochiai, M. Hayashida, T. Akutsu	J. C. Nacher, T. Ochiai, M. Hayashida, T. Akutsu	A mathematical model for generating bipartite graphs and its application to protein networks	A mathematical model for generating bipartite graphs and its application to protein networks	A mathematical model for generating bipartite graphs and its application to protein networks	JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL, 42, 48	JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL, 42, 48	JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL, 42, 48	2009/12	Refereed	English	Research paper(scientific journal)	Disclose to all
M. Hayashida, T. Tamura, T. Akutsu, W. -K. Ching, Y. Cong	M. Hayashida, T. Tamura, T. Akutsu, W. -K. Ching, Y. Cong	M. Hayashida, T. Tamura, T. Akutsu, W. -K. Ching, Y. Cong	Distribution and enumeration of attractors in probabilistic Boolean networks	Distribution and enumeration of attractors in probabilistic Boolean networks	Distribution and enumeration of attractors in probabilistic Boolean networks	IET SYSTEMS BIOLOGY, 3, 6, 465-474	IET SYSTEMS BIOLOGY, 3, 6, 465-474	IET SYSTEMS BIOLOGY, 3, 6, 465-474	2009/11	Refereed	English	Research paper(scientific journal)	Disclose to all
Takeyuki Tamura, Tatsuya Akutsu	Takeyuki Tamura, Tatsuya Akutsu	Takeyuki Tamura, Tatsuya Akutsu	Algorithms for singleton attractor detection in planar and nonplanar AND/OR Boolean networks	Algorithms for singleton attractor detection in planar and nonplanar AND/OR Boolean networks	Algorithms for singleton attractor detection in planar and nonplanar AND/OR Boolean networks	Mathematics in Computer Science, 2, 3, 401-420	Mathematics in Computer Science, 2, 3, 401-420	Mathematics in Computer Science, 2, 3, 401-420	2009/03	Refereed	English	Research paper(scientific journal)	Disclose to all
J. C. Nacher, M. Hayashida, T. Akutsu	J. C. Nacher, M. Hayashida, T. Akutsu	J. C. Nacher, M. Hayashida, T. Akutsu	Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairs	Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairs	Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairs	BIOSYSTEMS, 95, 2, 155-159	BIOSYSTEMS, 95, 2, 155-159	BIOSYSTEMS, 95, 2, 155-159	2009/02	Refereed	English	Research paper(scientific journal)	Disclose to all
Takeyuki Tamura, Tatsuya Akutsu	Takeyuki Tamura, Tatsuya Akutsu	Takeyuki Tamura, Tatsuya Akutsu	Detecting a Singleton Attractor in a Boolean Network Utilizing SAT Algorithms	Detecting a Singleton Attractor in a Boolean Network Utilizing SAT Algorithms	Detecting a Singleton Attractor in a Boolean Network Utilizing SAT Algorithms	IEICE TRANSACTIONS ON FUNDAMENTALS OF ELECTRONICS COMMUNICATIONS AND COMPUTER SCIENCES, E92A, 2, 493-501	IEICE TRANSACTIONS ON FUNDAMENTALS OF ELECTRONICS COMMUNICATIONS AND COMPUTER SCIENCES, E92A, 2, 493-501	IEICE TRANSACTIONS ON FUNDAMENTALS OF ELECTRONICS COMMUNICATIONS AND COMPUTER SCIENCES, E92A, 2, 493-501	2009/02	Refereed	English	Research paper(scientific journal)	Disclose to all
Tatsuya Akutsu, Morihiro Hayashida	Tatsuya Akutsu, Morihiro Hayashida	Tatsuya Akutsu, Morihiro Hayashida	Domain-based prediction and analysis of protein-protein interactions	Domain-based prediction and analysis of protein-protein interactions	Domain-based prediction and analysis of protein-protein interactions	Biological Data Mining in Protein Interaction Networks, 29-44	Biological Data Mining in Protein Interaction Networks, 29-44	Biological Data Mining in Protein Interaction Networks, 29-44	2009	Refereed	English		Disclose to all
Tatsuya Akutsu, Morihiro Hayashida, Takeyuki Tamura	Tatsuya Akutsu, Morihiro Hayashida, Takeyuki Tamura	Tatsuya Akutsu, Morihiro Hayashida, Takeyuki Tamura	Integer programming-based methods for attractor detection and control of boolean networks	Integer programming-based methods for attractor detection and control of boolean networks	Integer programming-based methods for attractor detection and control of boolean networks	Proceedings of the IEEE Conference on Decision and Control, 5610-5617	Proceedings of the IEEE Conference on Decision and Control, 5610-5617	Proceedings of the IEEE Conference on Decision and Control, 5610-5617	2009	Refereed	English	Research paper(international conference proceedings)	Disclose to all
HAYASHIDA Morihiro, AKUTSU Tatsuya, NAGAMOCHI Hiroshi	HAYASHIDA Morihiro, AKUTSU Tatsuya, NAGAMOCHI Hiroshi	HAYASHIDA Morihiro, AKUTSU Tatsuya, NAGAMOCHI Hiroshi	A Clustering Method for Analysis of Sequence Similarity Networks of Proteins Using Maximal Components of Graphs	A Clustering Method for Analysis of Sequence Similarity Networks of Proteins Using Maximal Components of Graphs	A Clustering Method for Analysis of Sequence Similarity Networks of Proteins Using Maximal Components of Graphs	情報処理学会論文誌, 49, SIG5(TBIO4), 15-24	情報処理学会論文誌, 49, SIG5(TBIO4), 15-24	情報処理学会論文誌, 49, SIG5(TBIO4), 15-24	2008/03/15	Refereed	English		Disclose to all
Takeyuki Tamura, Morihiro Hayashida, Tatsuya Akutsu, Shu-Qin Zhang, Wai-Ki Ching	Takeyuki Tamura, Morihiro Hayashida, Tatsuya Akutsu, Shu-Qin Zhang, Wai-Ki Ching	Takeyuki Tamura, Morihiro Hayashida, Tatsuya Akutsu, Shu-Qin Zhang, Wai-Ki Ching	Algorithms and complexity analyses for control of singleton attractors in Boolean networks	Algorithms and complexity analyses for control of singleton attractors in Boolean networks	Algorithms and complexity analyses for control of singleton attractors in Boolean networks	Eurasip Journal on Bioinformatics and Systems Biology, 2008	Eurasip Journal on Bioinformatics and Systems Biology, 2008	Eurasip Journal on Bioinformatics and Systems Biology, 2008	2008	Refereed	English	Research paper(scientific journal)	Disclose to all
T. Ochiai, J. C. Nacher, T. Akutsu	T. Ochiai, J. C. Nacher, T. Akutsu	T. Ochiai, J. C. Nacher, T. Akutsu	Emergence of the self-similar property in gene expression dynamics	Emergence of the self-similar property in gene expression dynamics	Emergence of the self-similar property in gene expression dynamics	Physica A: Statistical Mechanics and its Applications, 382, 2, 739-752	Physica A: Statistical Mechanics and its Applications, 382, 2, 739-752	Physica A: Statistical Mechanics and its Applications, 382, 2, 739-752	2007/08/15	Refereed	English	Research paper(scientific journal)	Disclose to all
Shu-Qin Zhang, Morihiro Hayashida, Tatsuya Akutsu, Wai-Ki Ching, Michael K. Ng	Shu-Qin Zhang, Morihiro Hayashida, Tatsuya Akutsu, Wai-Ki Ching, Michael K. Ng	Shu-Qin Zhang, Morihiro Hayashida, Tatsuya Akutsu, Wai-Ki Ching, Michael K. Ng	Algorithms for finding small attractors in boolean networks	Algorithms for finding small attractors in boolean networks	Algorithms for finding small attractors in boolean networks	Eurasip Journal on Bioinformatics and Systems Biology, 2007	Eurasip Journal on Bioinformatics and Systems Biology, 2007	Eurasip Journal on Bioinformatics and Systems Biology, 2007	2007	Refereed	English	Research paper(scientific journal)	Disclose to all
J. C. Nacher, T. Akutsu	J. C. Nacher, T. Akutsu	J. C. Nacher, T. Akutsu	Sensitivity of the power-law exponent in gene expression distribution to mRNA decay rate	Sensitivity of the power-law exponent in gene expression distribution to mRNA decay rate	Sensitivity of the power-law exponent in gene expression distribution to mRNA decay rate	Physics Letters, Section A: General, Atomic and Solid State Physics, 360, 1, 174-178	Physics Letters, Section A: General, Atomic and Solid State Physics, 360, 1, 174-178	Physics Letters, Section A: General, Atomic and Solid State Physics, 360, 1, 174-178	2006/12/18	Refereed	English	Research paper(scientific journal)	Disclose to all
JC Nacher, M Hayashida, T Akutsu	JC Nacher, M Hayashida, T Akutsu	JC Nacher, M Hayashida, T Akutsu	Protein domain networks: Scale-free mixing of positive and negative exponents	Protein domain networks: Scale-free mixing of positive and negative exponents	Protein domain networks: Scale-free mixing of positive and negative exponents	PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 367, 538-552	PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 367, 538-552	PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 367, 538-552	2006/07	Refereed	English	Research paper(scientific journal)	Disclose to all
Tatsuya Akutsu, Satoru Miyano	Tatsuya Akutsu, Satoru Miyano	Tatsuya Akutsu, Satoru Miyano	Selecting informative genes for cancer classification using gene expression data	Selecting informative genes for cancer classification using gene expression data	Selecting informative genes for cancer classification using gene expression data	Computational and Statistical Approaches to Genomics, 75-88	Computational and Statistical Approaches to Genomics, 75-88	Computational and Statistical Approaches to Genomics, 75-88	2006	Refereed	English		Disclose to all
Bahadur K.C. Dukka, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto, Tatsuya Akutsu	Bahadur K.C. Dukka, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto, Tatsuya Akutsu	Bahadur K.C. Dukka, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto, Tatsuya Akutsu	Protein threading with profiles and distance constraints using clique based algorithms	Protein threading with profiles and distance constraints using clique based algorithms	Protein threading with profiles and distance constraints using clique based algorithms	Journal of Bioinformatics and Computational Biology, 4, 1, 19-42	Journal of Bioinformatics and Computational Biology, 4, 1, 19-42	Journal of Bioinformatics and Computational Biology, 4, 1, 19-42	2006	Refereed	English	Research paper(scientific journal)	Disclose to all
J. C. Nacher, T. Ochiai, T. Yamada, M. Kanehisa, T. Akutsu	J. C. Nacher, T. Ochiai, T. Yamada, M. Kanehisa, T. Akutsu	J. C. Nacher, T. Ochiai, T. Yamada, M. Kanehisa, T. Akutsu	The role of log-normal dynamics in the evolution of biochemical pathways	The role of log-normal dynamics in the evolution of biochemical pathways	The role of log-normal dynamics in the evolution of biochemical pathways	BioSystems, 83, 1, 26-37	BioSystems, 83, 1, 26-37	BioSystems, 83, 1, 26-37	2006/01	Refereed	English	Research paper(scientific journal)	Disclose to all
竹本和広, ホセ・C・ナチェル, 阿久津達也	竹本和広, ホセ・C・ナチェル, 阿久津達也		原核生物の代謝ネットワークにおける構造の乱雑さと生育温度の関係	原核生物の代謝ネットワークにおける構造の乱雑さと生育温度の関係		日本ソフトウェア科学会研究会資料, 44, 31-37	日本ソフトウェア科学会研究会資料, 44, 31-37	, 44, 31-37	2006	Refereed		Research paper(other academic)	Disclose to all
Setsuro Matsuda, Jean-Philippe Vert, Hiroto Saigo, Nobuhisa Ueda, Hiroyuki Toh, Tatsuya Akutsu	Setsuro Matsuda, Jean-Philippe Vert, Hiroto Saigo, Nobuhisa Ueda, Hiroyuki Toh, Tatsuya Akutsu	Setsuro Matsuda, Jean-Philippe Vert, Hiroto Saigo, Nobuhisa Ueda, Hiroyuki Toh, Tatsuya Akutsu	A novel representation of protein sequences for prediction of subcellular location using support vector machines	A novel representation of protein sequences for prediction of subcellular location using support vector machines	A novel representation of protein sequences for prediction of subcellular location using support vector machines	Protein Science, 14, 11, 2804-2813	Protein Science, 14, 11, 2804-2813	Protein Science, 14, 11, 2804-2813	2005/11	Refereed	English	Research paper(scientific journal)	Disclose to all
J. C. Nacher, T. Ochiai, T. Akutsu	J. C. Nacher, T. Ochiai, T. Akutsu	J. C. Nacher, T. Ochiai, T. Akutsu	On the relation between fluctuation and scaling-law in gene expression time series from yeast to human	On the relation between fluctuation and scaling-law in gene expression time series from yeast to human	On the relation between fluctuation and scaling-law in gene expression time series from yeast to human	Modern Physics Letters B, 19, 23, 1169-1177	Modern Physics Letters B, 19, 23, 1169-1177	Modern Physics Letters B, 19, 23, 1169-1177	2005/10/20	Refereed	English	Research paper(scientific journal)	Disclose to all
Wai-Ki Ching, Michael M. Ng, Eric S. Fung, Tatsuya Akutsu	Wai-Ki Ching, Michael M. Ng, Eric S. Fung, Tatsuya Akutsu	Wai-Ki Ching, Michael M. Ng, Eric S. Fung, Tatsuya Akutsu	On construction of stochastic genetic networks based on gene expression sequences	On construction of stochastic genetic networks based on gene expression sequences	On construction of stochastic genetic networks based on gene expression sequences	International Journal of Neural Systems, 15, 4, 297-310	International Journal of Neural Systems, 15, 4, 297-310	International Journal of Neural Systems, 15, 4, 297-310	2005/08	Refereed	English	Research paper(scientific journal)	Disclose to all
Nobuhisa Ueda, Kiyoko F. Aoki-Kinoshita, Atsuko Yamaguchi, Tatsuya Akutsu, Hiroshi Mamitsuka	Nobuhisa Ueda, Kiyoko F. Aoki-Kinoshita, Atsuko Yamaguchi, Tatsuya Akutsu, Hiroshi Mamitsuka	Nobuhisa Ueda, Kiyoko F. Aoki-Kinoshita, Atsuko Yamaguchi, Tatsuya Akutsu, Hiroshi Mamitsuka	A probabilistic model for mining labeled ordered trees: Capturing patterns in carbohydrate sugar chains	A probabilistic model for mining labeled ordered trees: Capturing patterns in carbohydrate sugar chains	A probabilistic model for mining labeled ordered trees: Capturing patterns in carbohydrate sugar chains	IEEE Transactions on Knowledge and Data Engineering, 17, 8, 1051-1064	IEEE Transactions on Knowledge and Data Engineering, 17, 8, 1051-1064	IEEE Transactions on Knowledge and Data Engineering, 17, 8, 1051-1064	2005/08	Refereed	English	Research paper(scientific journal)	Disclose to all
Pierre Mahé, Nobuhisa Ueda, Tatsuya Akutsu, Jean-Luc Perret, Jean-Philippe Vert	Pierre Mahé, Nobuhisa Ueda, Tatsuya Akutsu, Jean-Luc Perret, Jean-Philippe Vert	Pierre Mahé, Nobuhisa Ueda, Tatsuya Akutsu, Jean-Luc Perret, Jean-Philippe Vert	Graph kernels for molecular structure-activity relationship analysis with support vector machines	Graph kernels for molecular structure-activity relationship analysis with support vector machines	Graph kernels for molecular structure-activity relationship analysis with support vector machines	Journal of Chemical Information and Modeling, 45, 4, 939-951	Journal of Chemical Information and Modeling, 45, 4, 939-951	Journal of Chemical Information and Modeling, 45, 4, 939-951	2005/07	Refereed	English	Research paper(scientific journal)	Disclose to all
T. Ochiai, J. C. Nacher, T. Akutsu	T. Ochiai, J. C. Nacher, T. Akutsu	T. Ochiai, J. C. Nacher, T. Akutsu	A stochastic approach to multi-gene expression dynamics	A stochastic approach to multi-gene expression dynamics	A stochastic approach to multi-gene expression dynamics	Physics Letters, Section A: General, Atomic and Solid State Physics, 339, 1-2, 1-9	Physics Letters, Section A: General, Atomic and Solid State Physics, 339, 1-2, 1-9	Physics Letters, Section A: General, Atomic and Solid State Physics, 339, 1-2, 1-9	2005/05/16	Refereed	English	Research paper(scientific journal)	Disclose to all
Masumi Itoh, Susumu Goto, Tatsuya Akutsu, Minoru Kanehisa	Masumi Itoh, Susumu Goto, Tatsuya Akutsu, Minoru Kanehisa	Masumi Itoh, Susumu Goto, Tatsuya Akutsu, Minoru Kanehisa	Fast and accurate database homology search using upper bounds of local alignment scores	Fast and accurate database homology search using upper bounds of local alignment scores	Fast and accurate database homology search using upper bounds of local alignment scores	Bioinformatics, 21, 7, 912-921	Bioinformatics, 21, 7, 912-921	Bioinformatics, 21, 7, 912-921	2005/04/01	Refereed	English	Research paper(scientific journal)	Disclose to all
J. C. Nacher, T. Yamada, S. Goto, M. Kanehisa, T. Akutsu	J. C. Nacher, T. Yamada, S. Goto, M. Kanehisa, T. Akutsu	J. C. Nacher, T. Yamada, S. Goto, M. Kanehisa, T. Akutsu	Two complementary representations of a scale-free network	Two complementary representations of a scale-free network	Two complementary representations of a scale-free network	Physica A: Statistical Mechanics and its Applications, 349, 1-2, 349-363	Physica A: Statistical Mechanics and its Applications, 349, 1-2, 349-363	Physica A: Statistical Mechanics and its Applications, 349, 1-2, 349-363	2005/04/01	Refereed	English	Research paper(scientific journal)	Disclose to all
KF Aoki, H Mamitsuka, T Akutsu, M Kanehisa	KF Aoki, H Mamitsuka, T Akutsu, M Kanehisa	KF Aoki, H Mamitsuka, T Akutsu, M Kanehisa	A score matrix to reveal the hidden links in glycans	A score matrix to reveal the hidden links in glycans	A score matrix to reveal the hidden links in glycans	BIOINFORMATICS, 21, 8, 1457-1463	BIOINFORMATICS, 21, 8, 1457-1463	BIOINFORMATICS, 21, 8, 1457-1463	2005/04	Refereed	English	Research paper(scientific journal)	Disclose to all
J. C. Nacher, N. Ueda, M. Kanehisa, T. Akutsu	J. C. Nacher, N. Ueda, M. Kanehisa, T. Akutsu	J. C. Nacher, N. Ueda, M. Kanehisa, T. Akutsu	Flexible construction of hierarchical scale-free networks with general exponent	Flexible construction of hierarchical scale-free networks with general exponent	Flexible construction of hierarchical scale-free networks with general exponent	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 71, 3	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 71, 3	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 71, 3	2005/03	Refereed	English	Research paper(scientific journal)	Disclose to all
D Fukagawa, T Akutsu	D Fukagawa, T Akutsu	D Fukagawa, T Akutsu	Performance analysis of a greedy algorithm for inferring Boolean functions	Performance analysis of a greedy algorithm for inferring Boolean functions	Performance analysis of a greedy algorithm for inferring Boolean functions	INFORMATION PROCESSING LETTERS, 93, 1, 7-12	INFORMATION PROCESSING LETTERS, 93, 1, 7-12	INFORMATION PROCESSING LETTERS, 93, 1, 7-12	2005/01	Refereed	English	Research paper(scientific journal)	Disclose to all
Jose C. Nacher, Nobuhisa Ueda, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu	Jose C. Nacher, Nobuhisa Ueda, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu	Jose C. Nacher, Nobuhisa Ueda, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu	Clustering under the line graph transformation: Application to reaction network	Clustering under the line graph transformation: Application to reaction network	Clustering under the line graph transformation: Application to reaction network	BMC Bioinformatics, 5	BMC Bioinformatics, 5	BMC Bioinformatics, 5	2004/12/24	Refereed	English	Research paper(scientific journal)	Disclose to all
T. Ochiai, J. C. Nacher, T. Akutsu	T. Ochiai, J. C. Nacher, T. Akutsu	T. Ochiai, J. C. Nacher, T. Akutsu	A constructive approach to gene expression dynamics	A constructive approach to gene expression dynamics	A constructive approach to gene expression dynamics	Physics Letters, Section A: General, Atomic and Solid State Physics, 330, 5, 313-321	Physics Letters, Section A: General, Atomic and Solid State Physics, 330, 5, 313-321	Physics Letters, Section A: General, Atomic and Solid State Physics, 330, 5, 313-321	2004/09/27	Refereed	English	Research paper(scientific journal)	Disclose to all
Hiroto Saigo, Jean-Philippe Vert, Nobuhisa Ueda, Tatsuya Akutsu	Hiroto Saigo, Jean-Philippe Vert, Nobuhisa Ueda, Tatsuya Akutsu	Hiroto Saigo, Jean-Philippe Vert, Nobuhisa Ueda, Tatsuya Akutsu	Protein homology detection using string alignment kernels	Protein homology detection using string alignment kernels	Protein homology detection using string alignment kernels	Bioinformatics, 20, 11, 1682-1689	Bioinformatics, 20, 11, 1682-1689	Bioinformatics, 20, 11, 1682-1689	2004/07/22	Refereed	English	Research paper(scientific journal)	Disclose to all
KF Aoki, A Yamaguchi, N Ueda, T Akutsu, H Mamitsuka, S Goto, M Kanehisa	KF Aoki, A Yamaguchi, N Ueda, T Akutsu, H Mamitsuka, S Goto, M Kanehisa	KF Aoki, A Yamaguchi, N Ueda, T Akutsu, H Mamitsuka, S Goto, M Kanehisa	KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains	KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains	KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains	NUCLEIC ACIDS RESEARCH, 32, W267-W272	NUCLEIC ACIDS RESEARCH, 32, W267-W272	NUCLEIC ACIDS RESEARCH, 32, W267-W272	2004/07	Refereed	English	Research paper(scientific journal)	Disclose to all
Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Tatsuya Akutsu, Minoru Kanehisa, Hiroshi Mamitsuka	Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Tatsuya Akutsu, Minoru Kanehisa, Hiroshi Mamitsuka	Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Tatsuya Akutsu, Minoru Kanehisa, Hiroshi Mamitsuka	Managing and analyzing carbohydrate data	Managing and analyzing carbohydrate data	Managing and analyzing carbohydrate data	SIGMOD Record, 33, 2, 33-38	SIGMOD Record, 33, 2, 33-38	SIGMOD Record, 33, 2, 33-38	2004	Refereed	English	Research paper(international conference proceedings)	Disclose to all
T Akutsu, S Kuhara, O Maruyama, S Miyano	T Akutsu, S Kuhara, O Maruyama, S Miyano	T Akutsu, S Kuhara, O Maruyama, S Miyano	Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model	Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model	Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model	THEORETICAL COMPUTER SCIENCE, 298, 1, 235-251	THEORETICAL COMPUTER SCIENCE, 298, 1, 235-251	THEORETICAL COMPUTER SCIENCE, 298, 1, 235-251	2003/04	Refereed	English	Research paper(scientific journal)	Disclose to all
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara	Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara	Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara	Inferring qualitative relations in genetic networks and metabolic pathways	Inferring qualitative relations in genetic networks and metabolic pathways	Inferring qualitative relations in genetic networks and metabolic pathways	Bioinformatics, 16, 8, 727-734	Bioinformatics, 16, 8, 727-734	Bioinformatics, 16, 8, 727-734	2000	Refereed	English	Research paper(scientific journal)	Disclose to all
Tatsuya Akutsu, Satoru Miyano	Tatsuya Akutsu, Satoru Miyano	Tatsuya Akutsu, Satoru Miyano	On the approximation of protein threading	On the approximation of protein threading	On the approximation of protein threading	Theoretical Computer Science, 210, 2, 261-275	Theoretical Computer Science, 210, 2, 261-275	Theoretical Computer Science, 210, 2, 261-275	1999/01/17	Refereed	English	Research paper(scientific journal)	Disclose to all
Tatsuya Akutsu, Hisao Tamaki, Takeshi Tokuyama	Tatsuya Akutsu, Hisao Tamaki, Takeshi Tokuyama	Tatsuya Akutsu, Hisao Tamaki, Takeshi Tokuyama	Distribution of Distances and Triangles in Point Sets and Its Application to Largest Common Point Set Problems	Distribution of Distances and Triangles in Point Sets and Its Application to Largest Common Point Set Problems	Distribution of Distances and Triangles in Point Sets and Its Application to Largest Common Point Set Problems	Proc. 13th ACM Symposium on Computational Geometry, 314-323	Proc. 13th ACM Symposium on Computational Geometry, 314-323	Proc. 13th ACM Symposium on Computational Geometry, 314-323	1997/06	Refereed	English	Research paper(international conference proceedings)	Disclose to all
T Akutsu	T Akutsu	T Akutsu	Protein structure alignment using dynamic programming and iterative improvement	Protein structure alignment using dynamic programming and iterative improvement	Protein structure alignment using dynamic programming and iterative improvement	IEICE TRANSACTIONS ON INFORMATION AND SYSTEMS, E79D, 12, 1629-1636	IEICE TRANSACTIONS ON INFORMATION AND SYSTEMS, E79D, 12, 1629-1636	IEICE TRANSACTIONS ON INFORMATION AND SYSTEMS, E79D, 12, 1629-1636	1996/12	Refereed	English	Research paper(scientific journal)	Disclose to all
Tatsuya Akutsu, Atsuhiro Takasu	Tatsuya Akutsu, Atsuhiro Takasu	Tatsuya Akutsu, Atsuhiro Takasu	On PAC learnability of functional dependencies	On PAC learnability of functional dependencies	On PAC learnability of functional dependencies	New Generation Computing, 12, 4, 359-374	New Generation Computing, 12, 4, 359-374	New Generation Computing, 12, 4, 359-374	1994/12	Refereed	English	Research paper(scientific journal)	Disclose to all
<< < > >> Title language:

Misc

Author	Author(Japanese)	Author(English)	Title	Title(Japanese)	Title(English)	Bibliography	Bibliography(Japanese)	Bibliography(English)	Publication date	Refereed paper	Language	Publishing type	Disclose
Natsu Nakajima, Tatsuya Akutsu, Ryuichiro Nakato	仲嶋なつ, 阿久津達也, 中戸隆一郎	Natsu Nakajima, Tatsuya Akutsu, Ryuichiro Nakato	Identifying gene co-expression networks and mutually exclusive gene sets from scRNA-seq data	シングルセルデータを用いた共発現遺伝子ネットワークと排他的発現遺伝子の推定手法	Identifying gene co-expression networks and mutually exclusive gene sets from scRNA-seq data	細胞, 52, 13, 758-760	細胞, 52, 13, 758-760	, 52, 13, 758-760	2020/11		Japanese	Article, review, commentary, editorial, etc.(trade magazine, newspaper, online media)	Disclose to all
Tatsuya Akutsu	Tatsuya Akutsu	Tatsuya Akutsu	Analysis of Boolean Networks and Boolean Models of Metabolic Networks	Analysis of Boolean Networks and Boolean Models of Metabolic Networks	Analysis of Boolean Networks and Boolean Models of Metabolic Networks	Application of Omics, AI and Blockchain in Bioinformatics Research (Book)	Application of Omics, AI and Blockchain in Bioinformatics Research (Book)	Application of Omics, AI and Blockchain in Bioinformatics Research (Book)	2019/11		English	Article, review, commentary, editorial, etc.(other)	Disclose to all
Cheng Xiaoqing, Tamura Takeyuki, Ching Wai-Ki, Akutsu Tatsuya	Cheng Xiaoqing, Tamura Takeyuki, Ching Wai-Ki, Akutsu Tatsuya		On the minimum number of genes required for discriminating steady states under a Boolean model	On the minimum number of genes required for discriminating steady states under a Boolean model		情報処理学会第51回バイオ情報学研究会	情報処理学会第51回バイオ情報学研究会		2017/09				Disclose to all
			A short review of methods for Caspase cleavage site prediction.	A short review of methods for Caspase cleavage site prediction.		情報処理学会第51回バイオ情報学研究会	情報処理学会第51回バイオ情報学研究会		2017/09				Disclose to all
石塚雅之, 阿久津達也, ナチェルホセ	石塚雅之, 阿久津達也, ナチェルホセ		最小支配集合に基づく有向生体ネットワーク解析のための高速アルゴリズム	最小支配集合に基づく有向生体ネットワーク解析のための高速アルゴリズム		情報処理学会バイオ情報学研究会	情報処理学会バイオ情報学研究会		2017/06		Japanese	Research paper, summary (national conference and other science council)	Disclose to all
阿久津達也	阿久津達也	阿久津達也	数理と人工知能技術によるゲノム情報と化学情報の解析	数理と人工知能技術によるゲノム情報と化学情報の解析	数理と人工知能技術によるゲノム情報と化学情報の解析	海洋化学研究, 29, 2, 85‐91	海洋化学研究, 29, 2, 85‐91	海洋化学研究, 29, 2, 85‐91	2016/11/12		Japanese		Disclose to all
Xiaoqing Cheng, Tomoya Mori, Yushan Qiu, Wai-Ki Ching, Tatsuya Akutsu	Xiaoqing Cheng, Tomoya Mori, Yushan Qiu, Wai-Ki Ching, Tatsuya Akutsu	Xiaoqing Cheng, Tomoya Mori, Yushan Qiu, Wai-Ki Ching, Tatsuya Akutsu	Exact Identification of the Structure of a Probabilistic Boolean Network from Samples	Exact Identification of the Structure of a Probabilistic Boolean Network from Samples	Exact Identification of the Structure of a Probabilistic Boolean Network from Samples	IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 13, 6, 1107-1116	IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 13, 6, 1107-1116	IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 13, 6, 1107-1116	2016/11		English	Research paper, summary (national conference and other science council)	Disclose to all
Fei He, Akiyoshi Hanai, NAGAMOCHI Hiroshi, Tatsuya Akutsu	Fei He, Akiyoshi Hanai, 永持仁, Tatsuya Akutsu	Fei He, Akiyoshi Hanai, NAGAMOCHI Hiroshi, Tatsuya Akutsu	Enumerating Naphthalene Isomers of Tree-like Chemical Graphs.	Enumerating Naphthalene Isomers of Tree-like Chemical Graphs.	Enumerating Naphthalene Isomers of Tree-like Chemical Graphs.	BIOINFORMATICS, 3, 258-265	BIOINFORMATICS, 3, 258-265	BIOINFORMATICS, 3, 258-265	2016/02	Refereed	English		Disclose to all
小谷野仁, 林田守広, 阿久津達也	小谷野仁, 林田守広, 阿久津達也	小谷野仁, 林田守広, 阿久津達也	文字列データの統計的クラスタリングのためのLaplace様混合モデルとEMアルゴリズムの理論	文字列データの統計的クラスタリングのためのLaplace様混合モデルとEMアルゴリズムの理論	文字列データの統計的クラスタリングのためのLaplace様混合モデルとEMアルゴリズムの理論	日本応用数理学会年会講演予稿集(CD-ROM), 2015, ROMBUNNO.9GATSU9NICHI,13:30,F,1	日本応用数理学会年会講演予稿集(CD-ROM), 2015, ROMBUNNO.9GATSU9NICHI,13:30,F,1	日本応用数理学会年会講演予稿集(CD-ROM), 2015, ROMBUNNO.9GATSU9NICHI,13:30,F,1	2015/09/02		Japanese		Disclose to all
劉立偉, 森智弥, 趙楊, 林田守広, 阿久津達也	劉立偉, 森智弥, 趙楊, 林田守広, 阿久津達也	劉立偉, 森智弥, 趙楊, 林田守広, 阿久津達也	根付き順序木の圧縮における分割型文法とオイラー文字列との比較	根付き順序木の圧縮における分割型文法とオイラー文字列との比較	根付き順序木の圧縮における分割型文法とオイラー文字列との比較	電子情報通信学会技術研究報告, 115, 112(IBISML2015 1-26), 245-246	電子情報通信学会技術研究報告, 115, 112(IBISML2015 1-26), 245-246	電子情報通信学会技術研究報告, 115, 112(IBISML2015 1-26), 245-246	2015/06/16		Japanese		Disclose to all
小谷野仁, 林田守広, 阿久津達也	小谷野仁, 林田守広, 阿久津達也	小谷野仁, 林田守広, 阿久津達也	String Clustering Based on a Laplace-like Mixture and EM Algorithm on a Set of Strings	文字列の集合上のLaplace様混合モデルとEMアルゴリズムに基づく文字列クラスタリング	String Clustering Based on a Laplace-like Mixture and EM Algorithm on a Set of Strings	電子情報通信学会技術研究報告, 115, 112(IBISML2015 1-26), 131-136	電子情報通信学会技術研究報告, 115, 112(IBISML2015 1-26), 131-136	電子情報通信学会技術研究報告, 115, 112(IBISML2015 1-26), 131-136	2015/06/16		Japanese		Disclose to all
林田守広, 阮佩穎, 阿久津達也	林田守広, 阮佩穎, 阿久津達也		タンパク質ドメイン構成に基づくプロテオーム圧縮	タンパク質ドメイン構成に基づくプロテオーム圧縮		研究報告数理モデル化と問題解決（MPS）, 2014, 11, 1-2	研究報告数理モデル化と問題解決（MPS）, 2014, 11, 1-2	, 2014, 11, 1-2	2014/09/18		Japanese		Disclose to all
KOYANO HITOSHI, HAYASHIDA MORIHIRO, AKUTSU TATSUYA	小谷野仁, 林田守広, 阿久津達也	KOYANO HITOSHI, HAYASHIDA MORIHIRO, AKUTSU TATSUYA	Maximum Margin Classifier Working in a Metric Space of Strings and Its Application to Protein Science	文字列の距離空間上の最大マージン識別器とそのタンパク質科学への応用 (情報論的学習理論と機械学習)	Maximum Margin Classifier Working in a Metric Space of Strings and Its Application to Protein Science	電子情報通信学会技術研究報告 = IEICE technical report : 信学技報, 114, 105, 75-82	電子情報通信学会技術研究報告 = IEICE technical report : 信学技報, 114, 105, 75-82	電子情報通信学会技術研究報告 = IEICE technical report : 信学技報, 114, 105, 75-82	2014/06/25		Japanese		Disclose to all
Hitoshi Koyano, Morihiro Hayashida, Tatsuya Akutsu	小谷野仁, 林田守広, 阿久津達也	Hitoshi Koyano, Morihiro Hayashida, Tatsuya Akutsu	Maximum Margin Classifier Working in a Metric Space of Strings and Its Application to Protein Science	文字列の距離空間上の最大マージン識別器とそのタンパク質科学への応用	Maximum Margin Classifier Working in a Metric Space of Strings and Its Application to Protein Science	IPSJ SIG Notes, 2014, 13, 1-8	研究報告数理モデル化と問題解決（MPS）, 2014, 13, 1-8	IPSJ SIG Notes, 2014, 13, 1-8	2014/06/18		Japanese		Disclose to all
Tatsuya Akutsu, Hiroshi Nagamochi	Tatsuya Akutsu, Hiroshi Nagamochi	Tatsuya Akutsu, Hiroshi Nagamochi	Comparison and enumeration of chemical graphs	Comparison and enumeration of chemical graphs	Comparison and enumeration of chemical graphs	Computational and Structural Biotechnology Journal, 5, 6, e201302004	Computational and Structural Biotechnology Journal, 5, 6, e201302004	Computational and Structural Biotechnology Journal, 5, 6, e201302004	2013		English	Book review, literature introduction, etc.	Disclose to all
趙楊, 林田守広, 阿久津達也	趙楊, 林田守広, 阿久津達也	趙楊, 林田守広, 阿久津達也	Integer programming-based method for grammar-based compression of ordered and unordered trees (特集「脳科学と知識処理」および一般)	Integer programming-based method for grammar-based compression of ordered and unordered trees (特集「脳科学と知識処理」および一般)	Integer programming-based method for grammar-based compression of ordered and unordered trees (特集「脳科学と知識処理」および一般)	人工知能基本問題研究会, 78, 51-56	人工知能基本問題研究会, 78, 51-56	人工知能基本問題研究会, 78, 51-56	2010/07/31		English		Disclose to all
深川大路, 阿久津達也, 高須淳宏, 安達淳	深川大路, 阿久津達也, 高須淳宏, 安達淳	深川大路, 阿久津達也, 高須淳宏, 安達淳	高さ制約付き無順序木の高速類似検索アルゴリズムについて	高さ制約付き無順序木の高速類似検索アルゴリズムについて	高さ制約付き無順序木の高速類似検索アルゴリズムについて	情報処理学会全国大会講演論文集, 72nd, 5, 5.45-5.46	情報処理学会全国大会講演論文集, 72nd, 5, 5.45-5.46	情報処理学会全国大会講演論文集, 72nd, 5, 5.45-5.46	2010/03/08		Japanese		Disclose to all
FUKAGAWA Daiji, AKUTSU Tatsuya, TAKASU Atsuhiro, ADACHI Jun	深川大路, 阿久津達也, 高須淳宏, 安達淳	FUKAGAWA Daiji, AKUTSU Tatsuya, TAKASU Atsuhiro, ADACHI Jun	2K-1 A fast similarity search algortihm for unordered trees of bounded height	2K-1 高さ制約付き無順序木の高速類似検索アルゴリズムについて(情報爆発時代におけるアルゴリズム高率化,一般セッション,「情報爆発」時代に向けた新IT基盤技術,情報処理学会創立50周年記念(第72回)全国大会)	2K-1 A fast similarity search algortihm for unordered trees of bounded height	全国大会講演論文集, 72, 5, "5-45"-"5-46"	全国大会講演論文集, 72, 5, "5-45"-"5-46"	全国大会講演論文集, 72, 5, "5-45"-"5-46"	2010/03/08		Japanese		Disclose to all
FUKAGAWA Daiji, AKUTSU Tatsuya, TAKASU Atsuhiro	阿久津達也, 深川大路, 高須淳宏	FUKAGAWA Daiji, AKUTSU Tatsuya, TAKASU Atsuhiro	Approximating Edit Distance of Unordered Trees of Bounded Height	高さの制限された無順序木の編集距離問題に対する近似アルゴリズム	Approximating Edit Distance of Unordered Trees of Bounded Height	IEICE technical report. Theoretical foundations of Computing, 109, 108, 31-36	電子情報通信学会技術研究報告. COMP, コンピュテーション, 109, 108, 31-36	IEICE technical report. Theoretical foundations of Computing, 109, 108, 31-36	2009/06/22		English		Disclose to all
高須淳宏, 深川大路, 阿久津達也	高須淳宏, 深川大路, 阿久津達也	高須淳宏, 深川大路, 阿久津達也	Statistical learning algorithm for tree similarity (特集「知識発見の諸科学への応用」および一般)	Statistical learning algorithm for tree similarity (特集「知識発見の諸科学への応用」および一般)	Statistical learning algorithm for tree similarity (特集「知識発見の諸科学への応用」および一般)	人工知能基本問題研究会, 71, 0, 51-56	人工知能基本問題研究会, 71, 0, 51-56	人工知能基本問題研究会, 71, 0, 51-56	2008/09/17		English		Disclose to all
深川大路, 高須淳宏, 阿久津達也	深川大路, 高須淳宏, 阿久津達也	深川大路, 高須淳宏, 阿久津達也	確率モデルに基づく木の類似度のパラメータ学習について	確率モデルに基づく木の類似度のパラメータ学習について	確率モデルに基づく木の類似度のパラメータ学習について	情報処理学会全国大会講演論文集, 70th, 5, 5.17-5.18	情報処理学会全国大会講演論文集, 70th, 5, 5.17-5.18	情報処理学会全国大会講演論文集, 70th, 5, 5.17-5.18	2008/03/13		Japanese		Disclose to all
Fukagawa Daiji, Takasu Atsuhiro, Akutsu Tatsuya	深川大路, 高須淳宏, 阿久津達也	Fukagawa Daiji, Takasu Atsuhiro, Akutsu Tatsuya	2J-3 Learning Tree Similarity Based on a Statistical Model	2J-3 確率モデルに基づく木の類似度のパラメータ学習について(情報爆発時代におけるマルチメディアデータと交通情報システム,一般セッション,「情報爆発」時代に向けた新しいIT基盤技術)	2J-3 Learning Tree Similarity Based on a Statistical Model	全国大会講演論文集, 70, 5, "5-17"-"5-18"	全国大会講演論文集, 70, 5, "5-17"-"5-18"	全国大会講演論文集, 70, 5, "5-17"-"5-18"	2008/03/13		Japanese		Disclose to all
J. C. Nacher, T. Akutsu	J. C. Nacher, T. Akutsu	J. C. Nacher, T. Akutsu	Recent progress on the analysis of power-law features in complex cellular networks	Recent progress on the analysis of power-law features in complex cellular networks	Recent progress on the analysis of power-law features in complex cellular networks	Cell Biochemistry and Biophysics, 49, 1, 37-47	Cell Biochemistry and Biophysics, 49, 1, 37-47	Cell Biochemistry and Biophysics, 49, 1, 37-47	2007/09		English	Book review, literature introduction, etc.	Disclose to all
林田守広, 阿久津達也	林田守広, 阿久津達也		タンパク質間相互作用強度の計算機による予測法 (タンパク質間相互作用)	タンパク質間相互作用強度の計算機による予測法 (タンパク質間相互作用)		生体の科学, 58, 5, 374-378	生体の科学, 58, 5, 374-378	, 58, 5, 374-378	2007/09		Japanese		Disclose to all
H. Fujiwara, L. Zhao, Hiroshi Nagamochi, T. Akutsu, W. Jiexun	H. Fujiwara, L. Zhao, Hiroshi Nagamochi, T. Akutsu, W. Jiexun	H. Fujiwara, L. Zhao, Hiroshi Nagamochi, T. Akutsu, W. Jiexun	Enumerating tree-like chemical structures from feature vector	Enumerating tree-like chemical structures from feature vector	Enumerating tree-like chemical structures from feature vector	2007 Korea-Japan Joint Workshop on Algorithms and Computation, pp. 48-55	2007 Korea-Japan Joint Workshop on Algorithms and Computation, pp. 48-55	2007 Korea-Japan Joint Workshop on Algorithms and Computation, pp. 48-55	2007	Refereed	English		Disclose to all
HAYASHIDA Morihiro, AKUTSU Tatsuya, NAGAMOCHI Hiroshi	林田守広, 阿久津達也, 永持仁	HAYASHIDA Morihiro, AKUTSU Tatsuya, NAGAMOCHI Hiroshi	A novel clustering method for analysis of biological networks using maximal components of graphs	グラフの極大成分を用いた生物ネットワークの解析	A novel clustering method for analysis of biological networks using maximal components of graphs	IPSJ SIG technical reports, 2006, 99, 1-8	情報処理学会研究報告バイオ情報学（BIO）, 2006, 99, 1-8	IPSJ SIG technical reports, 2006, 99, 1-8	2006/09/15		English		Disclose to all
AKUTSU Tatsuya, FUKAGAWA Daiji, TAKASU Atsuhiro	阿久津達也, 深川大路, 高須淳宏	AKUTSU Tatsuya, FUKAGAWA Daiji, TAKASU Atsuhiro	Approximating Tree Edit Distance Through String Edit Distance	木の編集距離の文字列の編集距離による近似	Approximating Tree Edit Distance Through String Edit Distance	IEICE technical report. Theoretical foundations of Computing, 106, 63, 17-24	電子情報通信学会技術研究報告. COMP, コンピュテーション, 106, 63, 17-24	IEICE technical report. Theoretical foundations of Computing, 106, 63, 17-24	2006/05/17		English		Disclose to all
NACHER Jose C, HAYASHIDA Morihiro, AKUTSU Tatsuya	JoseC.Nacher, 林田守広, 阿久津達也	NACHER Jose C, HAYASHIDA Morihiro, AKUTSU Tatsuya	Scale-free mixing in protein domain networks	タンパク質ドメインネットワークにおける混合スケールフリー次数分布	Scale-free mixing in protein domain networks	IPSJ SIG technical reports, 2006, 13, 65-72	情報処理学会研究報告バイオ情報学（BIO）, 2006, 13, 65-72	IPSJ SIG technical reports, 2006, 13, 65-72	2006/02/10		English		Disclose to all
AKUTSU Tatsuya, FUKAGAWA Daiji	阿久津達也, 深川大路	AKUTSU Tatsuya, FUKAGAWA Daiji	On the Complexity of Inferring a Graph from Path Frequency	パス頻度ベクトルからのグラフ推定問題の困難性について	On the Complexity of Inferring a Graph from Path Frequency	電子情報通信学会技術研究報告. COMP, コンピュテーション, 105, 7, 49-55	電子情報通信学会技術研究報告. COMP, コンピュテーション, 105, 7, 49-55	電子情報通信学会技術研究報告. COMP, コンピュテーション, 105, 7, 49-55	2005/04/11		English		Disclose to all
AKUTSU Tatsuya, HAYASHIDA Morihiro, TOMITA Etsuji, SUZUKI Jun'ichi, HORIMOTO Katsuhisa	阿久津達也, 林田守広, 富田悦次, 鈴木純一, 堀本勝久	AKUTSU Tatsuya, HAYASHIDA Morihiro, TOMITA Etsuji, SUZUKI Jun'ichi, HORIMOTO Katsuhisa	Profile Alignment with Constraints	制約付きプロファイルアライメント	Profile Alignment with Constraints	IEICE technical report. Theoretical foundations of Computing, 103, 622, 47-54	電子情報通信学会技術研究報告. COMP, コンピュテーション, 103, 622, 47-54	IEICE technical report. Theoretical foundations of Computing, 103, 622, 47-54	2004/01/22		English		Disclose to all
FUKAGAWA Daiji, AKUTSU Tatsuya	深川大路, 阿久津達也	FUKAGAWA Daiji, AKUTSU Tatsuya	Performance Analysis of a Greedy Algorithm for Inferring Boolean Functions	ブール関数推定のための貪欲アルゴリズムの性能解析	Performance Analysis of a Greedy Algorithm for Inferring Boolean Functions	IEICE technical report. Theoretical foundations of Computing, 103, 31, 9-14	電子情報通信学会技術研究報告. COMP, コンピュテーション, 103, 31, 9-14	IEICE technical report. Theoretical foundations of Computing, 103, 31, 9-14	2003/04/18		Japanese		Disclose to all
<< < > >> Title language:

Conference Activities & Talks

Title	Title(Japanese)	Title(English)	Conference	Conference(Japanese)	Conference(English)	Date	Language	Assortment	Disclose
A Novel Method for the Inverse QSAR/QSPR based on Artificial Neural Networks and Mixed Integer Linear Programming with Guaranteed Admissibility	A Novel Method for the Inverse QSAR/QSPR based on Artificial Neural Networks and Mixed Integer Linear Programming with Guaranteed Admissibility	A Novel Method for the Inverse QSAR/QSPR based on Artificial Neural Networks and Mixed Integer Linear Programming with Guaranteed Admissibility	13th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2020)	13th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2020)	13th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2020)	2020/02/24	English	Oral presentation(general)	Disclose to all
Breast cancer subtype by imbalanced omics data through a deep learning fusion model	Breast cancer subtype by imbalanced omics data through a deep learning fusion model	Breast cancer subtype by imbalanced omics data through a deep learning fusion model	10th International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB 2020)	10th International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB 2020)	10th International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB 2020)	2020/01/21	English	Oral presentation(general)	Disclose to all
Procleave: A Bioinformatic Approach for Protease-specific Substrate Cleavage Site Prediction by Combining Sequence and Structural Information	Procleave: A Bioinformatic Approach for Protease-specific Substrate Cleavage Site Prediction by Combining Sequence and Structural Information	Procleave: A Bioinformatic Approach for Protease-specific Substrate Cleavage Site Prediction by Combining Sequence and Structural Information	10h International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB2020)	10h International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB2020)	10h International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB2020)	2020/01/21	English	Oral presentation(general)	Disclose to all
A method for the inverse QSAR/QSPR based on artificial neural networks and mixed integer linear programming	A method for the inverse QSAR/QSPR based on artificial neural networks and mixed integer linear programming	A method for the inverse QSAR/QSPR based on artificial neural networks and mixed integer linear programming	10th International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB 2020)	10th International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB 2020)	10th International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB 2020)	2020/01/20	English	Oral presentation(general)	Disclose to all
Boolean Network-Based Approaches towards Precisions Medicine[Invited]	Boolean Network-Based Approaches towards Precisions Medicine [Invited]	Boolean Network-Based Approaches towards Precisions Medicine [Invited]	Workshop on Precision Network Medicine in the era of big data! (ICSB 2019)	Workshop on Precision Network Medicine in the era of big data! (ICSB 2019)	Workshop on Precision Network Medicine in the era of big data! (ICSB 2019)	2019/10/31	English	Oral presentation(invited, special)	Disclose to all
生体ネットワーク制御のための数理モデル[Invited]	生体ネットワーク制御のための数理モデル [Invited]		生命情報科学若手の会第11回研究会	生命情報科学若手の会第11回研究会		2019/10/19	Japanese	Oral presentation(invited, special)	Disclose to all
Boolean Network-based Approaches for Controlling Genetic Networks and Metabolic Networks[Invited]	Boolean Network-based Approaches for Controlling Genetic Networks and Metabolic Networks [Invited]	Boolean Network-based Approaches for Controlling Genetic Networks and Metabolic Networks [Invited]	International Symposium on the Genetics of Industrial Microorganisms (GIM 2019)	International Symposium on the Genetics of Industrial Microorganisms (GIM 2019)	International Symposium on the Genetics of Industrial Microorganisms (GIM 2019)	2019/09/09	English	Oral presentation(invited, special)	Disclose to all
Python と Scikit-learn によるバイオインフォマティクスデータ解析[Invited]	Python と Scikit-learn によるバイオインフォマティクスデータ解析 [Invited]		データサイエンススクール 2019 -京都大学データサイエンス教育公開ワークショップ-	データサイエンススクール 2019 -京都大学データサイエンス教育公開ワークショップ-		2019/08/02	Japanese	Public discourse, seminar, tutorial, course, lecture and others	Disclose to all
Graph theoretic approaches to controllability of biological networks[Invited]	Graph theoretic approaches to controllability of biological networks [Invited]	Graph theoretic approaches to controllability of biological networks [Invited]	Workshop on Bioinformatics and Data Analysis	Workshop on Bioinformatics and Data Analysis	Workshop on Bioinformatics and Data Analysis	2019/06/15	English	Oral presentation(keynote)	Disclose to all
A Method for Analyzing Single Cell Expression Data Based on PCA, Gaussian Mixture Model, and Kullback–Leibler Divergence[Invited]	A Method for Analyzing Single Cell Expression Data Based on PCA, Gaussian Mixture Model, and Kullback–Leibler Divergence [Invited]	A Method for Analyzing Single Cell Expression Data Based on PCA, Gaussian Mixture Model, and Kullback–Leibler Divergence [Invited]	Japan-Germany International Workshop 2019-1 The Human Cell Type Authentication Initiative	Japan-Germany International Workshop 2019-1 The Human Cell Type Authentication Initiative	Japan-Germany International Workshop 2019-1 The Human Cell Type Authentication Initiative	2019/05/15	English	Oral presentation(invited, special)	Disclose to all
細胞種情報解析における数理モデル概説[Invited]	細胞種情報解析における数理モデル概説 [Invited]		第1回幹細胞情報学イニシアチブ研究会	第1回幹細胞情報学イニシアチブ研究会		2019/05/10	Japanese	Oral presentation(invited, special)	Disclose to all
A mixed integer linear programming formulation to artificial neural networks	A mixed integer linear programming formulation to artificial neural networks	A mixed integer linear programming formulation to artificial neural networks	2nd International Conference on Information Science and System	2nd International Conference on Information Science and Systems	2nd International Conference on Information Science and System	2019/03/17	English	Oral presentation(general)	Disclose to all
確率ブーリアンネットワークの部分例の出現頻度からの同定可能性について	確率ブーリアンネットワークの部分例の出現頻度からの同定可能性について		第109回人工知能基本問題研究会	第109回人工知能基本問題研究会		2019/03/14	Japanese	Oral presentation(general)	Disclose to all
バイオインフォマティクスにおけるデータサイエンス	バイオインフォマティクスにおけるデータサイエンス		Data Science Spring School 2019	Data Science Spring School 2019		2019/02/27	Japanese	Public discourse, seminar, tutorial, course, lecture and others	Disclose to all
Integration and Analysis of Heterogeneous Biological Data via Convolutional Neural Networks and Matrix Factorization[Invited]	Integration and Analysis of Heterogeneous Biological Data via Convolutional Neural Networks and Matrix Factorization [Invited]	Integration and Analysis of Heterogeneous Biological Data via Convolutional Neural Networks and Matrix Factorization [Invited]	9th International Conference on Bioscience, Biochemistry and Bioinformatics	9th International Conference on Bioscience, Biochemistry and Bioinformatics	9th International Conference on Bioscience, Biochemistry and Bioinformatics	2019/01/08	English	Oral presentation(keynote)	Disclose to all
Algorithms for Analysis and Control of Boolean Networks[Invited]	Algorithms for Analysis and Control of Boolean Networks [Invited]	Algorithms for Analysis and Control of Boolean Networks [Invited]	5th International Conference on Algorithms for Computational Biology	5th International Conference on Algorithms for Computational Biology	5th International Conference on Algorithms for Computational Biology	2018/06/25	English	Oral presentation(invited, special)	Disclose to all
Minimum Dominating Set-based Approaches for Analyzing and Controlling Biological Networks	Minimum Dominating Set-based Approaches for Analyzing and Controlling Biological Networks	Minimum Dominating Set-based Approaches for Analyzing and Controlling Biological Networks	2016 Biotech and Pharmaceutical Service Platform - Biological Network Analysis Conference	2016 Biotech and Pharmaceutical Service Platform - Biological Network Analysis Conference	2016 Biotech and Pharmaceutical Service Platform - Biological Network Analysis Conference	2016/11/04	English		Disclose to all
Minimum Dominating Set-Based Approaches for Controlling and Analyzing Biological Networks	Minimum Dominating Set-Based Approaches for Controlling and Analyzing Biological Networks	Minimum Dominating Set-Based Approaches for Controlling and Analyzing Biological Networks	The 2016 (26th) Annual Meeting of the Japanese Society for Mathematical Biology	The 2016 (26th) Annual Meeting of the Japanese Society for Mathematical Biology	The 2016 (26th) Annual Meeting of the Japanese Society for Mathematical Biology	2016/09/07	English	Oral presentation(invited, special)	Disclose to all
Minimum Dominating Set-Based Approaches for Controlling and Analyzing Biological Networks	Minimum Dominating Set-Based Approaches for Controlling and Analyzing Biological Networks	Minimum Dominating Set-Based Approaches for Controlling and Analyzing Biological Networks	Controlling Complex Network Systems in Biology (Workshop)	Controlling Complex Network Systems in Biology (Workshop)	Controlling Complex Network Systems in Biology (Workshop)	2016/09/05	English	Oral presentation(invited, special)	Disclose to all
Extensions and Applications of the Minimum Dominating Set-Based Approach to Controllability of Complex Networks	Extensions and Applications of the Minimum Dominating Set-Based Approach to Controllability of Complex Networks	Extensions and Applications of the Minimum Dominating Set-Based Approach to Controllability of Complex Networks	Controlling Complex Networks (Satellite Symposium of International School and Conference on Network Science)	Controlling Complex Networks (Satellite Symposium of International School and Conference on Network Science)	Controlling Complex Networks (Satellite Symposium of International School and Conference on Network Science)	2016/05/30	English	Oral presentation(invited, special)	Disclose to all
<< < > >> Title language:

Books etc

Author	Author(Japanese)	Author(English)	Title	Title(Japanese)	Title(English)	Publisher	Publisher(Japanese)	Publisher(English)	Publication date	Language	Type	Disclose
阿久津, 達也, 竹本, 和広(共訳)	阿久津, 達也, 竹本, 和広(共訳)		バイオインフォマティクス : Pythonによる実践レシピ	バイオインフォマティクス : Pythonによる実践レシピ		朝倉書店	朝倉書店		2020/08	Japanese		Disclose to all
Tatsuya Akutsu	阿久津達也	Tatsuya Akutsu	Algorithms for Analysis, Inference, and Control of Boolean Networks	Algorithms for Analysis, Inference, and Control of Boolean Networks	Algorithms for Analysis, Inference, and Control of Boolean Networks	World Scientific	World Scientific	World Scientific	2018/04		Single Work	Disclose to all
Akutsu T	Akutsu T	Akutsu T	Sequence alignment algorithms: Applications to glycans and trees and tree-like structures	Sequence alignment algorithms: Applications to glycans and trees and tree-like structures	Sequence alignment algorithms: Applications to glycans and trees and tree-like structures	Handbook of Chemoinformatics Algorithms , , 363-381	Handbook of Chemoinformatics Algorithms , , 363-381	Handbook of Chemoinformatics Algorithms , , 363-381	2010	English		Disclose to all
阿久津達也	阿久津達也		バイオインフォマティクスー配列データ解析と構造予測ー	バイオインフォマティクスー配列データ解析と構造予測ー		朝倉書店	朝倉書店		2007/05			Disclose to all
丸山修, 阿久津達也	丸山修, 阿久津達也		バイオインフォマティクスの数理とアルゴリズム	バイオインフォマティクスの数理とアルゴリズム		共立出版	共立出版		2007/02		Joint Work	Disclose to all
阿久津達也, 浅井潔, 矢田哲士	阿久津達也, 浅井潔, 矢田哲士		バイオインフォマティクス ―確率モデルによる遺伝子配列解析ー	バイオインフォマティクス ―確率モデルによる遺伝子配列解析ー					2001/03		Joint Translation	Disclose to all
Title language:

Awards

Title(Japanese)	Title(English)	Organization name(Japanese)	Organization name(English)	Date
FIT奨励賞		FIT（情報科学技術フォーラム）		2014/09/05
	Intech Award Diploma		InTech (Open Access Publisher),	2014/10/26
SIGBIO功労賞		情報処理学会　バイオ情報学研究会		2014/12/18
	2009 Oxford Journals - JSBi Bioinformatics Prize (Best Poster Award)		The 20th International Conference on Genome Informatics	2009/12/16
SIGMPS功労賞		情報処理学会　数理モデル化と問題解決研究会		2006
	2004 Oxford University Press Bioinformatics Prize (Best Poster Award)		15th International Conference on Genome Informatics	2004/12/15
情報処理学会フェロー	Fellow, Information Processing Society of Japan	情報処理学会	Information Processing Society of Japan	2016/06/03
Best Theory Paper Award	Best Theory Paper Award	The 33th International Conference on Industrial, Engineering & Other Applications of Applied Intelligent Systems	The 33th International Conference on Industrial, Engineering & Other Applications of Applied Intelligent Systems	2020/09/25

External funds: competitive funds and Grants-in-Aid for Scientific Research (Kakenhi)

Type	Position	Title(Japanese)	Period
基盤研究（A)	Representative	グラフ理論とカーネル法の融合による化学構造設計法	2007/04/01-2010/03/31
基盤研究（A）	Representative	離散的手法とカーネル法の融合による構造設計法	2010/04/01-2014/03/31
萌芽研究	Representative	複雑生体構造のデータ圧縮を通じた発生原理の解明	2007/04/01-2010/03/31
萌芽研究	Representative	複雑生体ネットワークの離散モデルに基づく制御	2010/04/01-2013/03/31
特定領域研究	Representative	生物情報ネットワークの構造および動的挙動の数理解析	2005/04/01-2010/03/31
特別研究員奨励費	Representative		-
基盤研究（B）	Representative	構造を持つ生物情報データからの共通パターン抽出法	2004/04/01-2007/03/31
基盤研究（C）		バイオインフォマティクスのための共通パターン抽出アルゴリズムの研究	2001/04/01-2004/03/31
		生命システムの統合的理解のための生物情報ネットワークの構造および動的挙動解析	2005-
特別研究員奨励費		熱ショックタンパク質解析のための機械学習手法	2007-
挑戦的萌芽研究	Representative	複雑ネットワークに対する構造的に頑健な制御手法（平成26年度分）	2014/04/01-2015/03/31
基盤研究（Ａ）	Representative	離散的手法と統計的手法の融合による構造設計法（平成26年度分）	2014/04/01-2015/03/31
基盤研究（Ａ）	Representative	離散的手法と統計的手法の融合による構造設計法（平成27年度分）	2015/04/01-2016/03/31
挑戦的萌芽研究	Representative	複雑ネットワークに対する構造的に頑健な制御手法（平成27年度分）	2015/04/01-2016/03/31
挑戦的萌芽研究	Representative	複雑ネットワークに対する構造的に頑健な制御手法（平成28年度分）	2016/04/01-2017/03/31
基盤研究(A)	Representative	離散的手法と統計的手法の融合による構造設計法（平成28年度分）	2016/04/01-2017/03/31
特別研究員奨励費	Representative	データ融合によるタンパク質切断解析および疾患との関連性発見（平成28年度分）	2016/04/01-2017/03/31
基盤研究(A)	Representative	離散的手法と統計的手法の融合による構造設計法（平成29年度分）	2017/04/01-2018/03/31
挑戦的萌芽研究	Representative	複雑ネットワークに対する構造的に頑健な制御手法（平成29年度分）	2017/04/01-2018/03/31
特別研究員奨励費	Representative	汎がんモジュールとネットワーク解析による制御部分ネットワークの同定（平成29年度分）	2017/04/01-2018/03/31
基盤研究(A)	Representative	離散原像問題の解析と応用（平成30年度分）	2018/04/01-2019/03/31
特別研究員奨励費	Representative	汎がんモジュールとネットワーク解析による制御部分ネットワークの同定（平成30年度分）	2018/04/01-2019/03/31
特別研究員奨励費	Representative	汎がんモジュールとネットワーク解析による制御部分ネットワークの同定（平成30年度分）	2018/04/01-2019/03/31
基盤研究(A)	Representative	離散原像問題の解析と応用（2019年度分）	2019/04/01-2020/03/31
特別研究員奨励費	Representative	汎がんモジュールとネットワーク解析による制御部分ネットワークの同定（2019年度分）	2019/04/01-2020/03/31
<< < > >>

Teaching subject(s)

Name(Japanese)	Name(English)	Term	Department	Period
Advanced Study in IST I		通年	情報学研究科	2011/04-2012/03
Advanced Study in IST II		通年	情報学研究科	2011/04-2012/03
知能情報学特殊研究１		通年	情報学研究科	2011/04-2012/03
知能情報学特殊研究２		通年	情報学研究科	2011/04-2012/03
生命情報学		後期	工学部	2011/04-2012/03
知能情報学特別セミナー		通年	情報学研究科	2011/04-2012/03
生命情報学特別セミナー		後期	情報学研究科	2011/04-2012/03
システム生物情報学	System Bioinformatics	後期	全学共通科目	2011/04-2012/03
生命情報学入門	Introduction to Bioinformatics	前期	全学共通科目	2011/04-2012/03
生命情報学基礎論		前期	情報学研究科	2011/04-2012/03
生命情報学	Bioinformatics	後期	全学共通科目	2012/04-2013/03
生命情報学	Introduction to Computational Systems Bioinformatics	後期	工学部	2012/04-2013/03
生命情報学基礎論	Introduction to Bioinformatics	前期	情報学研究科	2012/04-2013/03
生命情報学特別セミナー	Advanced Seminar on Gene Informatics	後期	情報学研究科	2012/04-2013/03
知能情報学特別セミナー	Advanced Seminar on Intelligence Science and Technology	通年	情報学研究科	2012/04-2013/03
知能情報学特殊研究２	Advanced Study in Intelligence Science and Technology II	通年	情報学研究科	2012/04-2013/03
知能情報学特殊研究１	Advanced Study in Intelligence Science and Technology I	通年	情報学研究科	2012/04-2013/03
生命情報学	Introduction to Computational Systems Bioinformatics	後期	工学部	2013/04-2014/03
知能情報学特殊研究１	Advanced Study in Intelligence Science and Technology I	通年	情報学研究科	2013/04-2014/03
知能情報学特殊研究１	Advanced Study in Intelligence Science and Technology I	前期集中	情報学研究科	2013/04-2014/03
知能情報学特殊研究２	Advanced Study in Intelligence Science and Technology II	通年	情報学研究科	2013/04-2014/03
生命情報学基礎論	Introduction to Bioinformatics	前期	情報学研究科	2013/04-2014/03
知能情報学特別セミナー	Advanced Seminar on Intelligence Science and Technology	通年	情報学研究科	2013/04-2014/03
生命情報学特別セミナー	Advanced Seminar on Gene Informatics	後期	情報学研究科	2013/04-2014/03
生命情報学	Bioinformatics	後期	全学共通科目	2013/04-2014/03
生命情報学	Introduction to Computational Systems Bioinformatics	後期	工学部	2014/04-2015/03
知能情報学特殊研究 I	Advanced Study in Intelligence Science and Technology I	通年	情報学研究科	2014/04-2015/03
知能情報学特殊研究１	Advanced Study in Intelligence Science and Technology I	通年	情報学研究科	2014/04-2015/03
知能情報学特殊研究２	Advanced Study in Intelligence Science and Technology II	通年	情報学研究科	2014/04-2015/03
生命情報学基礎論	Introduction to Bioinformatics	前期	情報学研究科	2014/04-2015/03
知能情報学特別セミナー	Advanced Seminar on Intelligence Science and Technology	通年	情報学研究科	2014/04-2015/03
生命情報学特別セミナー	Advanced Seminar on Gene Informatics	後期	情報学研究科	2014/04-2015/03
生命情報学	Bioinformatics	後期	全学共通科目	2014/04-2015/03
Advanced Study in IST I	Advanced Study in Intelligence Science and Technology I	通年	情報学研究科	2014/04-2015/03
Advanced Study in IST II	Advanced Study in Intelligence Science and Technology II	通年	情報学研究科	2014/04-2015/03
Advanced Study in IST I	Advanced Study in Intelligence Science and Technology I	通年	情報学研究科	2015/04-2016/03
Advanced Study in IST II	Advanced Study in Intelligence Science and Technology II	通年	情報学研究科	2015/04-2016/03
生命情報学	Introduction to Computational Systems Bioinformatics	後期	工学部	2015/04-2016/03
生命情報学基礎論	Introduction to Bioinformatics	前期	情報学研究科	2015/04-2016/03
生命情報学特別セミナー	Advanced Seminar on Gene Informatics	後期	情報学研究科	2015/04-2016/03
知能情報学特別セミナー	Advanced Seminar on Intelligence Science and Technology	通年	情報学研究科	2015/04-2016/03
知能情報学特殊研究２	Advanced Study in Intelligence Science and Technology II	前期集中	情報学研究科	2015/04-2016/03
知能情報学特殊研究２	Advanced Study in Intelligence Science and Technology II	通年	情報学研究科	2015/04-2016/03
知能情報学特殊研究１	Advanced Study in Intelligence Science and Technology I	通年	情報学研究科	2015/04-2016/03
知能情報学特殊研究 I	Advanced Study in Intelligence Science and Technology I	通年	情報学研究科	2015/04-2016/03
計算科学が拓く世界	Introduction to Computational Science	後期	全学共通科目	2015/04-2016/03
Advanced Study in IST I	Advanced Study in Intelligence Science and Technology I	通年	情報学研究科	2016/04-2017/03
Advanced Study in IST II	Advanced Study in Intelligence Science and Technology II	通年	情報学研究科	2016/04-2017/03
生命情報学	Introduction to Computational Systems Bioinformatics	後期	工学部	2016/04-2017/03
生命情報学基礎論	Introduction to Bioinformatics	前期	情報学研究科	2016/04-2017/03
生命情報学特別セミナー	Advanced Seminar on Gene Informatics	後期	情報学研究科	2016/04-2017/03
生命情報学特論	Bioinformatics, Adv.	後期	情報学研究科	2016/04-2017/03
知能情報学特別セミナー	Advanced Seminar on Intelligence Science and Technology	通年	情報学研究科	2016/04-2017/03
知能情報学特殊研究２	Advanced Study in Intelligence Science and Technology II	通年	情報学研究科	2016/04-2017/03
知能情報学特殊研究１	Advanced Study in Intelligence Science and Technology I	通年	情報学研究科	2016/04-2017/03
知能情報学特殊研究 I	Advanced Study in Intelligence Science and Technology I	通年	情報学研究科	2016/04-2017/03
計算科学が拓く世界	Introduction to Computational Science	後期	全学共通科目	2016/04-2017/03
Advanced Study in IST I	Advanced Study in Intelligence Science and Technology I	通年	情報学研究科	2017/04-2018/03
Advanced Study in IST II	Advanced Study in Intelligence Science and Technology II	通年	情報学研究科	2017/04-2018/03
生命情報学	Introduction to Computational Systems Bioinformatics	後期	工学部	2017/04-2018/03
生命情報学基礎論	Introduction to Bioinformatics	前期	情報学研究科	2017/04-2018/03
生命情報学特別セミナー	Advanced Seminar on Gene Informatics	後期	情報学研究科	2017/04-2018/03
生命情報学特論	Bioinformatics, Adv.	後期	情報学研究科	2017/04-2018/03
知能情報学特別セミナー	Advanced Seminar on Intelligence Science and Technology	通年	情報学研究科	2017/04-2018/03
知能情報学特殊研究２	Advanced Study in Intelligence Science and Technology II	通年	情報学研究科	2017/04-2018/03
知能情報学特殊研究１	Advanced Study in Intelligence Science and Technology I	通年	情報学研究科	2017/04-2018/03
計算科学が拓く世界	Introduction to Computational Science	前期	全学共通科目	2017/04-2018/03
生命情報学	Introduction to Computational Systems Bioinformatics	前期	工学部	2018/04-2019/03
生命情報学基礎論	Introduction to Bioinformatics	前期	情報学研究科	2018/04-2019/03
生命情報学特論	Bioinformatics, Adv.	後期	情報学研究科	2018/04-2019/03
生命情報学	Introduction to Computational Systems Bioinformatics	前期	工学部	2019/04-2020/03
生命情報学基礎論	Introduction to Bioinformatics	前期	情報学研究科	2019/04-2020/03
生命情報学特論	Bioinformatics, Adv.	後期	情報学研究科	2019/04-2020/03
生命情報学	Introduction to Computational Systems Bioinformatics	前期	工学部	2020/04-2021/03
生命情報学基礎論	Introduction to Bioinformatics	前期	情報学研究科	2020/04-2021/03
生命情報学特論	Bioinformatics, Adv.	後期	情報学研究科	2020/04-2021/03
<< < > >>

School management (title, position)

Title	Period
化学研究所附属バイオインフォマティクスセンター長	2013/04/01-2015/03/31
大学評価委員会点検・評価実行委員会委員	2014/10/01-2018/03/31
化学研究所附属バイオインフォマティクスセンター長	2017/04/01-2019/03/31

Faculty management (title, position)

Title	Period
学術情報メディアセンター全国共同利用運営委員会委員	2006/04/01-2008/03/31
化学研究所ゲノムネット推進室運営委員会委員	2011/04/01-
化学研究所運営委員会委員	2013/04/01-2014/03/31
化学研究所建物管理委員会委員	2013/04/01-2014/03/31
化学研究所自己点検評価委員会委員	2013/04/01-2014/03/31
化学研究所情報システム技術委員会委員長	2013/04/01-2014/03/31
化学研究所情報セキュリティ委員会委員	2013/04/01-2014/03/31
研究用計算機専門委員会委員	2013/07/01-2015/06/30
化学研究所運営委員会委員	2014/04/01-2015/03/31
化学研究所建物管理委員会委員	2014/04/01-2015/03/31
化学研究所自己点検評価委員会委員	2014/04/01-2015/03/31
化学研究所情報システム技術委員会委員	2014/04/01-2015/03/31
化学研究所情報セキュリティ委員会委員長	2014/04/01-2015/03/31
学術情報メディアセンター全国共同利用運営委員会委員	2014/04/01-2016/03/31
化学研究所ゲノムネット推進室運営委員会委員	2015/04/01-2017/03/31
化学研究所建物管理委員会委員	2015/04/01-2016/03/31
化学研究所情報システム技術委員会委員長	2015/04/01-2016/03/31
化学研究所情報セキュリティ委員会副委員長	2015/04/01-2016/03/31
研究用計算機専門委員会委員	2015/07/01-2018/03/31
化学研究所講演委員会委員長	2016/04/01-2017/03/31
化学研究所情報システム技術委員会委員長	2016/04/01-2017/03/31
化学研究所情報セキュリティ委員会副委員長	2016/04/01-2017/03/31
化学研究所設備運営委員会委員	2016/04/01-2017/03/31
化学研究所ゲノムネット推進室運営委員会委員	2017/04/01-2019/03/31
化学研究所運営委員会委員	2017/04/01-2018/03/31
化学研究所建物管理委員会委員	2017/04/01-2018/03/31
化学研究所自己点検評価委員会委員	2017/04/01-2018/03/31
化学研究所情報システム技術委員会委員長	2017/04/01-2018/03/31
化学研究所情報セキュリティ委員会副委員長	2017/04/01-2018/03/31
化学研究所運営委員会委員	2018/04/01-2019/03/31
化学研究所自己点検評価委員会委員	2018/04/01-2019/03/31
化学研究所情報システム技術委員会委員長	2018/04/01-2019/03/31
化学研究所情報セキュリティ委員会副委員長	2018/04/01-2019/03/31
化学研究所自己点検評価委員会委員	2019/04/01-2020/03/31
化学研究所将来問題・研究活性化委員会委員	2019/04/01-2020/03/31
化学研究所情報システム技術委員会委員長	2019/04/01-2020/03/31
化学研究所情報セキュリティ委員会副委員長	2019/04/01-2020/03/31
化学研究所ゲノムネット推進室運営委員会委員	2020/04/01-2022/03/31
化学研究所情報システム技術委員会委員長	2020/04/01-2021/03/31
化学研究所情報セキュリティ委員会副委員長	2020/04/01-2021/03/31
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Academic organizaions (other)

Organization name(Japanese)	Misc(Japanese)	Period
電子情報通信学会	コンピュテーション研究会副委員長	2004/04/01-2006/03/31
情報処理学会	バイオ情報学研究会主査	2007/04/01-2009/03/31
情報処理学会	論文誌編集委員会基礎理論WG主査	2000/04/01-2001/03/31
情報処理学会	バイオ情報学研究会運営委員	2015/04/01-2019/03/31

Other activities (public organizations)

Committee(Japanese)	Committee(English)	Title	Organization name	Period
（独）日本学術振興会特別研究員等審査会及び国際事業委員会		専門委員及び書面審査員		2010-
（独）日本学術振興会特別研究員等審査会及び国際事業委員会		専門委員及び書面審査員		2011-

阿久津 達也

阿久津達也