緒方 博之

Last Update: 2019/10/21 14:17:41

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Name(Kanji/Kana/Abecedarium Latinum)
緒方 博之/オガタ ヒロユキ/Ogata, Hiroyuki
Primary Affiliation(Org1/Job title)
Institute for Chemical Research (ICR)/Professor
Affiliated programs (koza)
Org1 Job title
Graduate Schools Pharmaceutical Sciences Professor
Graduate Schools Science Professor
Academic Degree
Field(Japanese) Field(English) University(Japanese) University(English) Method
修士(理学) Master of Science 京都大学 Kyoto University
博士(理学) Doctor of Science 京都大学 Kyoto University
Personal Profile
(Japanese)
微生物のゲノム・メタゲノム解析。ゲノム進化。微生物生態学。
(English)
Microbial genomics, metagenomics, genome evolution and microbial ecology.
Personal Website(s) (URL(s))
URL
https://cls.kuicr.kyoto-u.ac.jp/
ORCID ID
https://orcid.org/0000-0001-6594-377X
researchmap URL
https://researchmap.jp/hiroyuki.ogata
Research Topics
(Japanese)
ウイルスゲノム、微生物ゲノム、ゲノム進化、メタゲノム、バイオインフォマティクス、微生物生態学
(English)
Viral genomics, Microbial genomics, Genome evolution, Metagenomics, Bioinformatics, Microbial ecology
Overview of the research
(Japanese)
微生物の多様性と時空間分布の意味を進化学と生態学の視点で理解することを目的としています。主に巨大ウイルスの進化、海洋微生物の機能と環境との相互作用を中心に研究をしています。
(English)
My principal research interest is to understand the diversity and spatio-temporal distributions of viruses and microbes in the light of their evolution and ecology. I am currently focusing on the evolution and ecology of giant viruses and their hosts.
Fields of research (key words)
Key words(Japanese) Key words(English)
ウイルス Virus
メタゲノム Metagenome
Published Papers
Author Author(Japanese) Author(English) Title Title(Japanese) Title(English) Bibliography Bibliography(Japanese) Bibliography(English) Publication date Refereed paper Language Publishing type Disclose
Okazaki Y., Nishimura Y., Yoshida T., Ogata H., Nakano S. Okazaki Y., Nishimura Y., Yoshida T., Ogata H., Nakano S. Okazaki Y., Nishimura Y., Yoshida T., Ogata H., Nakano S. Genome-resolved viral and cellular metagenomes revealed potential key virus-host interactions in a deep freshwater lake. Genome-resolved viral and cellular metagenomes revealed potential key virus-host interactions in a deep freshwater lake. Genome-resolved viral and cellular metagenomes revealed potential key virus-host interactions in a deep freshwater lake. Environ. Microbiol., doi: 10., 1111, 1462-2920.14816 Environ. Microbiol., doi: 10., 1111, 1462-2920.14816 Environ. Microbiol., doi: 10., 1111, 1462-2920.14816 2019/10 Refereed English Research paper(scientific journal) Disclose to all
Li Y., Endo H., Gotoh Y., Watai H., Ogawa N., Blanc-Mathieu R., Yoshida T., Ogata H. Li Y., Endo H., Gotoh Y., Watai H., Ogawa N., Blanc-Mathieu R., Yoshida T., Ogata H. Li Y., Endo H., Gotoh Y., Watai H., Ogawa N., Blanc-Mathieu R., Yoshida T., Ogata H. The earth is small for “leviathans”: long distance dispersal of giant viruses across aquatic environments. The earth is small for “leviathans”: long distance dispersal of giant viruses across aquatic environments. The earth is small for “leviathans”: long distance dispersal of giant viruses across aquatic environments. Microbes Environ., 34, 3, 334-339 Microbes Environ., 34, 3, 334-339 Microbes Environ., 34, 3, 334-339 2019/09 Refereed English Research paper(scientific journal) Disclose to all
Castillo Y.M., Mangot J.-F., Benites F., Logares R., Kuronishi M., Ogata H., Jaillon O., Massana R., Sebastián M., Vaqué D. Castillo Y.M., Mangot J.-F., Benites F., Logares R., Kuronishi M., Ogata H., Jaillon O., Massana R., Sebastián M., Vaqué D. Castillo Y.M., Mangot J.-F., Benites F., Logares R., Kuronishi M., Ogata H., Jaillon O., Massana R., Sebastián M., Vaqué D. Assessing the viral content of uncultured picoeukaryotes in the global-ocean by single cell genomics Assessing the viral content of uncultured picoeukaryotes in the global-ocean by single cell genomics Assessing the viral content of uncultured picoeukaryotes in the global-ocean by single cell genomics Cell., 177, 1109-1123 Cell., 177, 1109-1123 Cell., 177, 1109-1123 2019/05 Refereed English Research paper(scientific journal) Disclose to all
Aoki K., Hagiwara R., Akashi M., Murata K., Ogata H., Takemura M. Aoki K., Hagiwara R., Akashi M., Murata K., Ogata H., Takemura M. Aoki K., Hagiwara R., Akashi M., Murata K., Ogata H., Takemura M. Fifteen marseilleviruses newly isolated from three water samples in Japan reveal a local diversity of Marseilleviridae. Fifteen marseilleviruses newly isolated from three water samples in Japan reveal a local diversity of Marseilleviridae. Fifteen marseilleviruses newly isolated from three water samples in Japan reveal a local diversity of Marseilleviridae. Front. Microbiol., 24, 10, 1152 Front. Microbiol., 24, 10, 1152 Front. Microbiol., 24, 10, 1152 2019/05 Refereed English Research paper(scientific journal) Disclose to all
Gregory A.C., Zayed A.A., Conceicao-Neto N., Temperton B., Bolduc B., Alberti A., Ardyna M., Arkhipova K., Carmichael M., Cruaud C., Dimier C., Dominguez-Huerta G., Ferland J., Kandels S., Liu Y., Marec C., Pesant S., Picheral M., Pisarev S., Poulain J., Tremblay J.E., Vik D.; Tara Oceans Coordinators, Babin M., Bowler C., Culley A.I., de Vargas C., Dutilh B.E., Iudicone D., Karp-Boss L., Roux S., Sunagawa S., Wincker P., Sullivan M.B. Gregory A.C., Zayed A.A., Conceicao-Neto N., Temperton B., Bolduc B., Alberti A., Ardyna M., Arkhipova K., Carmichael M., Cruaud C., Dimier C., Dominguez-Huerta G., Ferland J., Kandels S., Liu Y., Marec C., Pesant S., Picheral M., Pisarev S., Poulain J., Tremblay J.E., Vik D.; Tara Oceans Coordinators, Babin M., Bowler C., Culley A.I., de Vargas C., Dutilh B.E., Iudicone D., Karp-Boss L., Roux S., Sunagawa S., Wincker P., Sullivan M.B. Gregory A.C., Zayed A.A., Conceicao-Neto N., Temperton B., Bolduc B., Alberti A., Ardyna M., Arkhipova K., Carmichael M., Cruaud C., Dimier C., Dominguez-Huerta G., Ferland J., Kandels S., Liu Y., Marec C., Pesant S., Picheral M., Pisarev S., Poulain J., Tremblay J.E., Vik D.; Tara Oceans Coordinators, Babin M., Bowler C., Culley A.I., de Vargas C., Dutilh B.E., Iudicone D., Karp-Boss L., Roux S., Sunagawa S., Wincker P., Sullivan M.B. Marine DNA Viral Macro- and Microdiversity from Pole to Pole. Marine DNA Viral Macro- and Microdiversity from Pole to Pole. Marine DNA Viral Macro- and Microdiversity from Pole to Pole. Cell., 16;177, 5, 1109-1123 Cell., 16;177, 5, 1109-1123 Cell., 16;177, 5, 1109-1123 2019/05 Refereed English Research paper(scientific journal) Disclose to all
Yoshikawa G., Blanc-Mathieu R., Song C., Kayama Y., Mochizuki T., Murata K., Ogata H., Takemura M. Yoshikawa G., Blanc-Mathieu R., Song C., Kayama Y., Mochizuki T., Murata K., Ogata H., Takemura M. Yoshikawa G., Blanc-Mathieu R., Song C., Kayama Y., Mochizuki T., Murata K., Ogata H., Takemura M. Medusavirus, a novel large DNA virus discovered from hot spring water. Medusavirus, a novel large DNA virus discovered from hot spring water. Medusavirus, a novel large DNA virus discovered from hot spring water. J. Virol., 93, e02130-18 J. Virol., 93, e02130-18 J. Virol., 93, e02130-18 2019/04 Refereed English Research paper(scientific journal) Disclose to all
Caputi L., Carradec Q., Eveillard D., Kirilovsky A., Pelletier, Pierella Karlusich J.J., Vieira F.R.J., Villar E., Chaffron S., Malviya S., Scalco E., Acinas S.G., Alberti A., Aury J.-M., Benoiston A.-S., Bertrand A., Biard T., Bittner L., Boccara M., Brum J.R., Brunet C., Busseni G., Carratala A., Claustre H., Coelho L.P., Colin S., D’Aniello S., Da Silva C., Del Core M., Dore H., Gasparini S., Kokoszka F., Jamet J.-L., Lejeusne C., Lepoivre C., Lescot M., Lima-Mendez G., Lombard F., Lukes J., Maillet N., Madoui M.-A., Martinez E., Mazzocchi M.G., Neou M.B., Paz-Yepes J., Poulain J., Ramondenc S., Romagnan J.-B., Roux S., Manta D.S., Sanges R., Speich S., Sprovieri M., Sunagawa S., Taillander V., Tanaka A., Tirichine L., Trottier C., Uitz J., Veluchamy A., Vesela J., Vincent F., Yau S., Kandels-Lewis S., Searson S., Dimier C., Picheral M., Tara Oceans Coordinators, Bork P., Boss E., de Vargas C., Follows M.J., Grimsley N., Guidi L., Hingamp P., Karsenti E., Sordino P., Stemmann L., Sullivan M.B., Tagliabue A., Zingone A., Garczarek L., d’Ortenzio F., Testor P., Not F., Ribera d’Alcala M., Wincker P., Bowler C., Iudicone D. Caputi L., Carradec Q., Eveillard D., Kirilovsky A., Pelletier, Pierella Karlusich J.J., Vieira F.R.J., Villar E., Chaffron S., Malviya S., Scalco E., Acinas S.G., Alberti A., Aury J.-M., Benoiston A.-S., Bertrand A., Biard T., Bittner L., Boccara M., Brum J.R., Brunet C., Busseni G., Carratala A., Claustre H., Coelho L.P., Colin S., D’Aniello S., Da Silva C., Del Core M., Dore H., Gasparini S., Kokoszka F., Jamet J.-L., Lejeusne C., Lepoivre C., Lescot M., Lima-Mendez G., Lombard F., Lukes J., Maillet N., Madoui M.-A., Martinez E., Mazzocchi M.G., Neou M.B., Paz-Yepes J., Poulain J., Ramondenc S., Romagnan J.-B., Roux S., Manta D.S., Sanges R., Speich S., Sprovieri M., Sunagawa S., Taillander V., Tanaka A., Tirichine L., Trottier C., Uitz J., Veluchamy A., Vesela J., Vincent F., Yau S., Kandels-Lewis S., Searson S., Dimier C., Picheral M., Tara Oceans Coordinators, Bork P., Boss E., de Vargas C., Follows M.J., Grimsley N., Guidi L., Hingamp P., Karsenti E., Sordino P., Stemmann L., Sullivan M.B., Tagliabue A., Zingone A., Garczarek L., d’Ortenzio F., Testor P., Not F., Ribera d’Alcala M., Wincker P., Bowler C., Iudicone D. Caputi L., Carradec Q., Eveillard D., Kirilovsky A., Pelletier, Pierella Karlusich J.J., Vieira F.R.J., Villar E., Chaffron S., Malviya S., Scalco E., Acinas S.G., Alberti A., Aury J.-M., Benoiston A.-S., Bertrand A., Biard T., Bittner L., Boccara M., Brum J.R., Brunet C., Busseni G., Carratala A., Claustre H., Coelho L.P., Colin S., D’Aniello S., Da Silva C., Del Core M., Dore H., Gasparini S., Kokoszka F., Jamet J.-L., Lejeusne C., Lepoivre C., Lescot M., Lima-Mendez G., Lombard F., Lukes J., Maillet N., Madoui M.-A., Martinez E., Mazzocchi M.G., Neou M.B., Paz-Yepes J., Poulain J., Ramondenc S., Romagnan J.-B., Roux S., Manta D.S., Sanges R., Speich S., Sprovieri M., Sunagawa S., Taillander V., Tanaka A., Tirichine L., Trottier C., Uitz J., Veluchamy A., Vesela J., Vincent F., Yau S., Kandels-Lewis S., Searson S., Dimier C., Picheral M., Tara Oceans Coordinators, Bork P., Boss E., de Vargas C., Follows M.J., Grimsley N., Guidi L., Hingamp P., Karsenti E., Sordino P., Stemmann L., Sullivan M.B., Tagliabue A., Zingone A., Garczarek L., d’Ortenzio F., Testor P., Not F., Ribera d’Alcala M., Wincker P., Bowler C., Iudicone D. Community-level responses to iron availability in open ocean planktonic ecosystems. Community-level responses to iron availability in open ocean planktonic ecosystems. Community-level responses to iron availability in open ocean planktonic ecosystems. Global Biogeochem. Cycles, 33, 391-419 Global Biogeochem. Cycles, 33, 391-419 Global Biogeochem. Cycles, 33, 391-419 2019/01 Refereed English Research paper(scientific journal) Disclose to all
Roux S., Adriaenssens E.M., Dutilh B.E., Koonin E.V., Kropinski A.M., Krupovic M., Kuhn J.H., Lavigne R., Brister J.R., Varsani A., Amid C., Aziz R.K., Bordenstein S.R., Bork P., Breitbart M., Cochrane G.R., Daly R.A., Desnues C., Duhaime M.B., Emerson J.B., Enault F., Fuhrman J.A., Hingamp P., Hugenholtz P., Hurwitz B.L., Ivanova N.N., Labonte J.M., Lee K.-B., Malmstrom R.R., Martinez-Garcia M., Mizrachi I., Ogata H., Paez-Espino D., Petit M.-A., Putonti C., Rattei T., Reyes A., Rodriguez-Valera F., Rosario K., Schriml L., Schulz F., Steward G.F., Sullivan M.B., Sunagawa S., Suttle C.A., Temperton B., Tringe S.G., Vega Thurber R., Webster N.S., Whiteson K.L., Wilhelm S.W., Wommack K.E., Woyke T., Wrighton K., Yilmaz P., Yoshida T., Young M.J., Yutin N., Allen L.Z., Kyrpides N.C., and Eloe-Fadrosh E.A. Roux S., Adriaenssens E.M., Dutilh B.E., Koonin E.V., Kropinski A.M., Krupovic M., Kuhn J.H., Lavigne R., Brister J.R., Varsani A., Amid C., Aziz R.K., Bordenstein S.R., Bork P., Breitbart M., Cochrane G.R., Daly R.A., Desnues C., Duhaime M.B., Emerson J.B., Enault F., Fuhrman J.A., Hingamp P., Hugenholtz P., Hurwitz B.L., Ivanova N.N., Labonte J.M., Lee K.-B., Malmstrom R.R., Martinez-Garcia M., Mizrachi I., Ogata H., Paez-Espino D., Petit M.-A., Putonti C., Rattei T., Reyes A., Rodriguez-Valera F., Rosario K., Schriml L., Schulz F., Steward G.F., Sullivan M.B., Sunagawa S., Suttle C.A., Temperton B., Tringe S.G., Vega Thurber R., Webster N.S., Whiteson K.L., Wilhelm S.W., Wommack K.E., Woyke T., Wrighton K., Yilmaz P., Yoshida T., Young M.J., Yutin N., Allen L.Z., Kyrpides N.C., and Eloe-Fadrosh E.A. Roux S., Adriaenssens E.M., Dutilh B.E., Koonin E.V., Kropinski A.M., Krupovic M., Kuhn J.H., Lavigne R., Brister J.R., Varsani A., Amid C., Aziz R.K., Bordenstein S.R., Bork P., Breitbart M., Cochrane G.R., Daly R.A., Desnues C., Duhaime M.B., Emerson J.B., Enault F., Fuhrman J.A., Hingamp P., Hugenholtz P., Hurwitz B.L., Ivanova N.N., Labonte J.M., Lee K.-B., Malmstrom R.R., Martinez-Garcia M., Mizrachi I., Ogata H., Paez-Espino D., Petit M.-A., Putonti C., Rattei T., Reyes A., Rodriguez-Valera F., Rosario K., Schriml L., Schulz F., Steward G.F., Sullivan M.B., Sunagawa S., Suttle C.A., Temperton B., Tringe S.G., Vega Thurber R., Webster N.S., Whiteson K.L., Wilhelm S.W., Wommack K.E., Woyke T., Wrighton K., Yilmaz P., Yoshida T., Young M.J., Yutin N., Allen L.Z., Kyrpides N.C., and Eloe-Fadrosh E.A. Minimum Information about Uncultivated Virus Genomes (MIUViG): a community consensus on standards and best practices for describing genome sequences from uncultivated viruses. Minimum Information about Uncultivated Virus Genomes (MIUViG): a community consensus on standards and best practices for describing genome sequences from uncultivated viruses. Minimum Information about Uncultivated Virus Genomes (MIUViG): a community consensus on standards and best practices for describing genome sequences from uncultivated viruses. Nat. Biotechnol., 37, 29-37 Nat. Biotechnol., 37, 29-37 Nat. Biotechnol., 37, 29-37 2019/01 Refereed English Research paper(scientific journal) Disclose to all
Caputi L., Carradec Q., Eveillard D., Kirilovsky A., Pelletier, Pierella Karlusich J.J., Vieira F.R.J., Villar E., Chaffron S., Malviya S., Scalco E., Acinas S.G., Alberti A., Aury J.-M., Benoiston A.-S., Bertrand A., Biard T., Bittner L., Boccara M., Brum J.R., Brunet C., Busseni G., Carratala A., Claustre H., Coelho L.P., Colin S., D’Aniello S., Da Silva C., Del Core M., Dore H., Gasparini S., Kokoszka F., Jamet J.-L., Lejeusne C., Lepoivre C., Lescot M., Lima-Mendez G., Lombard F., Lukes J., Maillet N., Madoui M.-A., Martinez E., Mazzocchi M.G., Neou M.B., Paz-Yepes J., Poulain J., Ramondenc S., Romagnan J.-B., Roux S., Manta D.S., Sanges R., Speich S., Sprovieri M., Sunagawa S., Taillander V., Tanaka A., Tirichine L., Trottier C., Uitz J., Veluchamy A., Vesela J., Vincent F., Yau S., Kandels-Lewis S., Searson S., Dimier C., Picheral M., Tara Oceans Coordinators, Bork P., Boss E., de Vargas C., Follows M.J., Grimsley N., Guidi L., Hingamp P., Karsenti E., Sordino P., Stemmann L., Sullivan M.B., Tagliabue A., Zingone A., Garczarek L., d’Ortenzio F., Testor P., Not F., Ribera d’Alcala M., Wincker P., Bowler C., Iudicone D. Caputi L., Carradec Q., Eveillard D., Kirilovsky A., Pelletier, Pierella Karlusich J.J., Vieira F.R.J., Villar E., Chaffron S., Malviya S., Scalco E., Acinas S.G., Alberti A., Aury J.-M., Benoiston A.-S., Bertrand A., Biard T., Bittner L., Boccara M., Brum J.R., Brunet C., Busseni G., Carratala A., Claustre H., Coelho L.P., Colin S., D’Aniello S., Da Silva C., Del Core M., Dore H., Gasparini S., Kokoszka F., Jamet J.-L., Lejeusne C., Lepoivre C., Lescot M., Lima-Mendez G., Lombard F., Lukes J., Maillet N., Madoui M.-A., Martinez E., Mazzocchi M.G., Neou M.B., Paz-Yepes J., Poulain J., Ramondenc S., Romagnan J.-B., Roux S., Manta D.S., Sanges R., Speich S., Sprovieri M., Sunagawa S., Taillander V., Tanaka A., Tirichine L., Trottier C., Uitz J., Veluchamy A., Vesela J., Vincent F., Yau S., Kandels-Lewis S., Searson S., Dimier C., Picheral M., Tara Oceans Coordinators, Bork P., Boss E., de Vargas C., Follows M.J., Grimsley N., Guidi L., Hingamp P., Karsenti E., Sordino P., Stemmann L., Sullivan M.B., Tagliabue A., Zingone A., Garczarek L., d’Ortenzio F., Testor P., Not F., Ribera d’Alcala M., Wincker P., Bowler C., Iudicone D. Caputi L., Carradec Q., Eveillard D., Kirilovsky A., Pelletier, Pierella Karlusich J.J., Vieira F.R.J., Villar E., Chaffron S., Malviya S., Scalco E., Acinas S.G., Alberti A., Aury J.-M., Benoiston A.-S., Bertrand A., Biard T., Bittner L., Boccara M., Brum J.R., Brunet C., Busseni G., Carratala A., Claustre H., Coelho L.P., Colin S., D’Aniello S., Da Silva C., Del Core M., Dore H., Gasparini S., Kokoszka F., Jamet J.-L., Lejeusne C., Lepoivre C., Lescot M., Lima-Mendez G., Lombard F., Lukes J., Maillet N., Madoui M.-A., Martinez E., Mazzocchi M.G., Neou M.B., Paz-Yepes J., Poulain J., Ramondenc S., Romagnan J.-B., Roux S., Manta D.S., Sanges R., Speich S., Sprovieri M., Sunagawa S., Taillander V., Tanaka A., Tirichine L., Trottier C., Uitz J., Veluchamy A., Vesela J., Vincent F., Yau S., Kandels-Lewis S., Searson S., Dimier C., Picheral M., Tara Oceans Coordinators, Bork P., Boss E., de Vargas C., Follows M.J., Grimsley N., Guidi L., Hingamp P., Karsenti E., Sordino P., Stemmann L., Sullivan M.B., Tagliabue A., Zingone A., Garczarek L., d’Ortenzio F., Testor P., Not F., Ribera d’Alcala M., Wincker P., Bowler C., Iudicone D. Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems Global Biogeochem. Cycles, 33, 33 Global Biogeochem. Cycles, 33, 33 Global Biogeochem. Cycles, 33, 33 2019/01 Refereed English Research paper(scientific journal) Disclose to all
Inoue M., Nakamoto I., Omae K., Oguro T., Ogata H., Yoshida T., Sako Y. Inoue M., Nakamoto I., Omae K., Oguro T., Ogata H., Yoshida T., Sako Y. Inoue M., Nakamoto I., Omae K., Oguro T., Ogata H., Yoshida T., Sako Y. Structural and phylogenetic diversity of anaerobic carbon-monoxide dehydrogenases. Structural and phylogenetic diversity of anaerobic carbon-monoxide dehydrogenases. Structural and phylogenetic diversity of anaerobic carbon-monoxide dehydrogenases. Front. Microbiol., 9, 3353 Front. Microbiol., 9, 3353 Front. Microbiol., 9, 3353 2019/01 Refereed English Research paper(scientific journal) Disclose to all
Salazar G., Paoli L., Alberti A., Huerta-Cepas J., Ruscheweyh H.-J., Cuenca M., Field C.M., Coelho L.P., Cruaud C., Engelen S., Gregory A.C., Labadie K., Marec C., Pelletier E., Royo-Llonch M., Roux S., Sánchez P., Uehara H., Zayed A.A., Zeller G., Carmichae M., Dimier C., Ferland J., Kandels S., Picheral M., Pisarev S., Poulain J., Tara Oceans Coordinators, Acinas S.G., Babin M., Bork P., Bowler C., de Vargas C., Guidi L., Hingamp P., Iudicone D., Karp-Boss L., Karsenti E., Ogata H., Pesant S., Speich S., Sullivan M.B., Wincker P., Sunagawa S. Salazar G., Paoli L., Alberti A., Huerta-Cepas J., Ruscheweyh H.-J., Cuenca M., Field C.M., Coelho L.P., Cruaud C., Engelen S., Gregory A.C., Labadie K., Marec C., Pelletier E., Royo-Llonch M., Roux S., Sánchez P., Uehara H., Zayed A.A., Zeller G., Carmichae M., Dimier C., Ferland J., Kandels S., Picheral M., Pisarev S., Poulain J., Tara Oceans Coordinators, Acinas S.G., Babin M., Bork P., Bowler C., de Vargas C., Guidi L., Hingamp P., Iudicone D., Karp-Boss L., Karsenti E., Ogata H., Pesant S., Speich S., Sullivan M.B., Wincker P., Sunagawa S. Salazar G., Paoli L., Alberti A., Huerta-Cepas J., Ruscheweyh H.-J., Cuenca M., Field C.M., Coelho L.P., Cruaud C., Engelen S., Gregory A.C., Labadie K., Marec C., Pelletier E., Royo-Llonch M., Roux S., Sánchez P., Uehara H., Zayed A.A., Zeller G., Carmichae M., Dimier C., Ferland J., Kandels S., Picheral M., Pisarev S., Poulain J., Tara Oceans Coordinators, Acinas S.G., Babin M., Bork P., Bowler C., de Vargas C., Guidi L., Hingamp P., Iudicone D., Karp-Boss L., Karsenti E., Ogata H., Pesant S., Speich S., Sullivan M.B., Wincker P., Sunagawa S. Gene expression changes and community turnover differentially shape the global ocean metatranscriptome. Gene expression changes and community turnover differentially shape the global ocean metatranscriptome. Gene expression changes and community turnover differentially shape the global ocean metatranscriptome. Cell. Cell. Cell. 2019 Refereed English Disclose to all
Ibarbalz F.M., Henry N., Brandão M.C., Martini S., Busseni G., Byrne H., Coelho L.P., Endo H., Gasol J.M., Gregory A.C, Mahé F., Rigonato J., Royo-Llonch M., Salazar G., Sanz-Sáez I, Scalco E., Soviadan D., Zayed A.A., Zingone A., Labadie K., Ferland J., Marec C., Kandels S., Picheral M., Dimier C., Poulain J., Pisarev S., Carmichael M., Pesant S., Tara Oceans Coordinators, Babin M., Boss E., Iudicone D., Jaillon O., Acinas S.G., Ogata H., Pelletier E., Stemmann L., Sullivan M.B., Sunagawa S., Bopp L., de Vargas C., Karp-Boss L., Wincker P., Lombard F., Bowler C., Zinger L. Ibarbalz F.M., Henry N., Brandão M.C., Martini S., Busseni G., Byrne H., Coelho L.P., Endo H., Gasol J.M., Gregory A.C, Mahé F., Rigonato J., Royo-Llonch M., Salazar G., Sanz-Sáez I, Scalco E., Soviadan D., Zayed A.A., Zingone A., Labadie K., Ferland J., Marec C., Kandels S., Picheral M., Dimier C., Poulain J., Pisarev S., Carmichael M., Pesant S., Tara Oceans Coordinators, Babin M., Boss E., Iudicone D., Jaillon O., Acinas S.G., Ogata H., Pelletier E., Stemmann L., Sullivan M.B., Sunagawa S., Bopp L., de Vargas C., Karp-Boss L., Wincker P., Lombard F., Bowler C., Zinger L. Ibarbalz F.M., Henry N., Brandão M.C., Martini S., Busseni G., Byrne H., Coelho L.P., Endo H., Gasol J.M., Gregory A.C, Mahé F., Rigonato J., Royo-Llonch M., Salazar G., Sanz-Sáez I, Scalco E., Soviadan D., Zayed A.A., Zingone A., Labadie K., Ferland J., Marec C., Kandels S., Picheral M., Dimier C., Poulain J., Pisarev S., Carmichael M., Pesant S., Tara Oceans Coordinators, Babin M., Boss E., Iudicone D., Jaillon O., Acinas S.G., Ogata H., Pelletier E., Stemmann L., Sullivan M.B., Sunagawa S., Bopp L., de Vargas C., Karp-Boss L., Wincker P., Lombard F., Bowler C., Zinger L. Global trends in marine plankton diversity across kingdoms of life. Global trends in marine plankton diversity across kingdoms of life. Global trends in marine plankton diversity across kingdoms of life. Cell. Cell. Cell. 2019 Refereed English Disclose to all
Piredda R., Claverie J.-M., Decelle J., de Vargas C., Dunthorn M., Edvardsen B., Eikrem W., Forster D., Kooistra W.H.C.F., Logares R., Massana R., Montresor M., Not F., Ogata H., Pawlowski J., Romac S., Sarno D., Stoeck T., Zingone A. Piredda R., Claverie J.-M., Decelle J., de Vargas C., Dunthorn M., Edvardsen B., Eikrem W., Forster D., Kooistra W.H.C.F., Logares R., Massana R., Montresor M., Not F., Ogata H., Pawlowski J., Romac S., Sarno D., Stoeck T., Zingone A. Piredda R., Claverie J.-M., Decelle J., de Vargas C., Dunthorn M., Edvardsen B., Eikrem W., Forster D., Kooistra W.H.C.F., Logares R., Massana R., Montresor M., Not F., Ogata H., Pawlowski J., Romac S., Sarno D., Stoeck T., Zingone A. Diatom diversity through HTS-metabarcoding in coastal European seas. Diatom diversity through HTS-metabarcoding in coastal European seas. Diatom diversity through HTS-metabarcoding in coastal European seas. Sci. Rep., 8, 18059 Sci. Rep., 8, 18059 Sci. Rep., 8, 18059 2018/12 Refereed English Research paper(scientific journal) Disclose to all
Li Y., Hingamp P., Watai H., Endo H., Yoshida T., Ogata H. Li Y., Hingamp P., Watai H., Endo H., Yoshida T., Ogata H. Li Y., Hingamp P., Watai H., Endo H., Yoshida T., Ogata H. Degenerate PCR primers to reveal the diversity of giant viruses in coastal waters. Degenerate PCR primers to reveal the diversity of giant viruses in coastal waters. Degenerate PCR primers to reveal the diversity of giant viruses in coastal waters. Viruses, 10, E496 Viruses, 10, E496 Viruses, 10, E496 2018/09 Refereed English Research paper(scientific journal) Disclose to all
Arai W., Taniguchi T., Goto S., Moriya Y., Uehara H., Takemoto K., Ogata H., Takami H. Arai W., Taniguchi T., Goto S., Moriya Y., Uehara H., Takemoto K., Ogata H., Takami H. Arai W., Taniguchi T., Goto S., Moriya Y., Uehara H., Takemoto K., Ogata H., Takami H. MAPLE 2.3.0: an improved system for evaluating the functionomes of genomes and metagenomes. MAPLE 2.3.0: an improved system for evaluating the functionomes of genomes and metagenomes. MAPLE 2.3.0: an improved system for evaluating the functionomes of genomes and metagenomes. Biosci. Biotechnol. Biochem., doi:10., 1080/09168451.2018.1476122 Biosci. Biotechnol. Biochem., doi:10., 1080/09168451.2018.1476122 Biosci. Biotechnol. Biochem., doi:10., 1080/09168451.2018.1476122 2018/05 Refereed English Research paper(scientific journal) Disclose to all
Yoshikawa G., Askora A., Blanc-Mathieu R., Kawasaki T., Li Y., Nakano M., Ogata H., Yamada T. Yoshikawa G., Askora A., Blanc-Mathieu R., Kawasaki T., Li Y., Nakano M., Ogata H., Yamada T. Yoshikawa G., Askora A., Blanc-Mathieu R., Kawasaki T., Li Y., Nakano M., Ogata H., Yamada T. Xanthomonas citri jumbo phage XacN1 exhibits a wide host range and high complement of tRNA genes. Xanthomonas citri jumbo phage XacN1 exhibits a wide host range and high complement of tRNA genes. Xanthomonas citri jumbo phage XacN1 exhibits a wide host range and high complement of tRNA genes. Sci. Rep., 8, 4486,, doi:10.1038/s41598-018-22239-3 Sci. Rep., 8, 4486,, doi:10.1038/s41598-018-22239-3 Sci. Rep., 8, 4486,, doi:10.1038/s41598-018-22239-3 2018 Refereed English Research paper(scientific journal) Disclose to all
Seeleuthner Y., Mondy S., Lombard V., Carradec Q., Pelletier E., Wessner M., Leconte J., Mangot J.F., Poulain J., Labadie K., Logares R., Sunagawa S., de Berardinis V., Salanoubat M., Dimier C., Kandels-Lewis S., Picheral M., Searson S., Tara Oceans Coordinators, Pesant S., Poulton N., Stepanauskas R., Bork P., Bowler C., Hingamp P., Sullivan M.B., Iudicone D., Massana R., Aury J.M., Henrissat B., Karsenti E., Jaillon O., Sieracki M., de Vargas C., Wincker P. Seeleuthner Y., Mondy S., Lombard V., Carradec Q., Pelletier E., Wessner M., Leconte J., Mangot J.F., Poulain J., Labadie K., Logares R., Sunagawa S., de Berardinis V., Salanoubat M., Dimier C., Kandels-Lewis S., Picheral M., Searson S., Tara Oceans Coordinators, Pesant S., Poulton N., Stepanauskas R., Bork P., Bowler C., Hingamp P., Sullivan M.B., Iudicone D., Massana R., Aury J.M., Henrissat B., Karsenti E., Jaillon O., Sieracki M., de Vargas C., Wincker P. Seeleuthner Y., Mondy S., Lombard V., Carradec Q., Pelletier E., Wessner M., Leconte J., Mangot J.F., Poulain J., Labadie K., Logares R., Sunagawa S., de Berardinis V., Salanoubat M., Dimier C., Kandels-Lewis S., Picheral M., Searson S., Tara Oceans Coordinators, Pesant S., Poulton N., Stepanauskas R., Bork P., Bowler C., Hingamp P., Sullivan M.B., Iudicone D., Massana R., Aury J.M., Henrissat B., Karsenti E., Jaillon O., Sieracki M., de Vargas C., Wincker P. Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans. Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans. Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans. Nat.Commun., 9,310, doi:10., 1038/s41467-017-02235-3 Nat.Commun., 9,310, doi:10., 1038/s41467-017-02235-3 Nat.Commun., 9,310, doi:10., 1038/s41467-017-02235-3 2018 Refereed English Research paper(scientific journal) Disclose to all
Carradec Q., Pelletier E., Da Silva C., Alberti A., Seeleuthner Y., Blanc-Mathieu R., Lima-Mendez G., Rocha F., Tirichine L., Labadie K., Kirilovsky A., Bertrand A., Engelen S., Madoui M.-A., Meheust R., Poulain J., Romac S., Richter D., Yoshikawa G., Dimier C., Kandels-Lewis S., Picheral M., Searson S., Tara Oceans Coordinators, Jaillon O., Aury J.-M., Karsenti E., Sullivan M.B., Sunagawa S., Bork P., Not F., Hingamp P., Raes J., Guidi L., Ogata H., de Vargas C., Iudicone D., Bowler C., Wincker P. Carradec Q., Pelletier E., Da Silva C., Alberti A., Seeleuthner Y., Blanc-Mathieu R., Lima-Mendez G., Rocha F., Tirichine L., Labadie K., Kirilovsky A., Bertrand A., Engelen S., Madoui M.-A., Meheust R., Poulain J., Romac S., Richter D., Yoshikawa G., Dimier C., Kandels-Lewis S., Picheral M., Searson S., Tara Oceans Coordinators, Jaillon O., Aury J.-M., Karsenti E., Sullivan M.B., Sunagawa S., Bork P., Not F., Hingamp P., Raes J., Guidi L., Ogata H., de Vargas C., Iudicone D., Bowler C., Wincker P. Carradec Q., Pelletier E., Da Silva C., Alberti A., Seeleuthner Y., Blanc-Mathieu R., Lima-Mendez G., Rocha F., Tirichine L., Labadie K., Kirilovsky A., Bertrand A., Engelen S., Madoui M.-A., Meheust R., Poulain J., Romac S., Richter D., Yoshikawa G., Dimier C., Kandels-Lewis S., Picheral M., Searson S., Tara Oceans Coordinators, Jaillon O., Aury J.-M., Karsenti E., Sullivan M.B., Sunagawa S., Bork P., Not F., Hingamp P., Raes J., Guidi L., Ogata H., de Vargas C., Iudicone D., Bowler C., Wincker P. A global ocean atlas of eukaryotic genes. A global ocean atlas of eukaryotic genes. A global ocean atlas of eukaryotic genes. Nat. Commun., 9,373, doi:10., 1038/s41467-017-02342-1 Nat. Commun., 9,373, doi:10., 1038/s41467-017-02342-1 Nat. Commun., 9,373, doi:10., 1038/s41467-017-02342-1 2018 Refereed English Research paper(scientific journal) Disclose to all
Hiroyuki Ogata Hiroyuki Ogata Hiroyuki Ogata Habitat Alterations by Viruses: Strategies by Tupanviruses and Others. Habitat Alterations by Viruses: Strategies by Tupanviruses and Others. Habitat Alterations by Viruses: Strategies by Tupanviruses and Others. Microbes Environ, 33, 117-119 Microbes Environ, 33, 117-119 Microbes Environ, 33, 117-119 2018 English Research paper(scientific journal) Disclose to all
Roux S., Adriaenssens E.M., Dutilh B.E., Koonin E.V., Kropinski A.M., Krupovic M., Kuhn J.H., Lavigne R., Brister J.R., Varsani A., Amid C., Aziz R.K., Bordenstein S.R., Bork P., Breitbart M., Cochrane G.R., Daly R.A., Desnues C., Duhaime M.B., Emerson J.B., Enault F., Fuhrman J.A., Hingamp P., Hugenholtz P., Hurwitz B.L., Ivanova N.N., Labonte J.M., Lee K.-B., Malmstrom R.R., Martinez-Garcia M., Mizrachi I., Ogata H., Paez-Espino D., Petit M.-A., Putonti C., Rattei T., Reyes A., Rodriguez-Valera F., Rosario K., Schriml L., Schulz F., Steward G.F., Sullivan M.B., Sunagawa S., Suttle C.A., Temperton B., Tringe S.G., Vega Thurber R., Webster N.S., Whiteson K.L., Wilhelm S.W., Wommack K.E., Woyke T., Wrighton K., Yilmaz P., Yoshida T., Young M.J., Yutin N., Allen L.Z., Kyrpides N.C., Eloe-Fadrosh E.A. Roux S., Adriaenssens E.M., Dutilh B.E., Koonin E.V., Kropinski A.M., Krupovic M., Kuhn J.H., Lavigne R., Brister J.R., Varsani A., Amid C., Aziz R.K., Bordenstein S.R., Bork P., Breitbart M., Cochrane G.R., Daly R.A., Desnues C., Duhaime M.B., Emerson J.B., Enault F., Fuhrman J.A., Hingamp P., Hugenholtz P., Hurwitz B.L., Ivanova N.N., Labonte J.M., Lee K.-B., Malmstrom R.R., Martinez-Garcia M., Mizrachi I., Ogata H., Paez-Espino D., Petit M.-A., Putonti C., Rattei T., Reyes A., Rodriguez-Valera F., Rosario K., Schriml L., Schulz F., Steward G.F., Sullivan M.B., Sunagawa S., Suttle C.A., Temperton B., Tringe S.G., Vega Thurber R., Webster N.S., Whiteson K.L., Wilhelm S.W., Wommack K.E., Woyke T., Wrighton K., Yilmaz P., Yoshida T., Young M.J., Yutin N., Allen L.Z., Kyrpides N.C., Eloe-Fadrosh E.A. Roux S., Adriaenssens E.M., Dutilh B.E., Koonin E.V., Kropinski A.M., Krupovic M., Kuhn J.H., Lavigne R., Brister J.R., Varsani A., Amid C., Aziz R.K., Bordenstein S.R., Bork P., Breitbart M., Cochrane G.R., Daly R.A., Desnues C., Duhaime M.B., Emerson J.B., Enault F., Fuhrman J.A., Hingamp P., Hugenholtz P., Hurwitz B.L., Ivanova N.N., Labonte J.M., Lee K.-B., Malmstrom R.R., Martinez-Garcia M., Mizrachi I., Ogata H., Paez-Espino D., Petit M.-A., Putonti C., Rattei T., Reyes A., Rodriguez-Valera F., Rosario K., Schriml L., Schulz F., Steward G.F., Sullivan M.B., Sunagawa S., Suttle C.A., Temperton B., Tringe S.G., Vega Thurber R., Webster N.S., Whiteson K.L., Wilhelm S.W., Wommack K.E., Woyke T., Wrighton K., Yilmaz P., Yoshida T., Young M.J., Yutin N., Allen L.Z., Kyrpides N.C., Eloe-Fadrosh E.A. Minimum Information about Uncultivated Virus Genomes (MIUViG): a community consensus on standards and best practices for describing genome sequences from uncultivated viruses. Minimum Information about Uncultivated Virus Genomes (MIUViG): a community consensus on standards and best practices for describing genome sequences from uncultivated viruses. Minimum Information about Uncultivated Virus Genomes (MIUViG): a community consensus on standards and best practices for describing genome sequences from uncultivated viruses. Nat. Biotechnol. Nat. Biotechnol. 2018 Refereed English Research paper(scientific journal) Disclose to all
Endo H., Ogata H., Suzuki K. Endo H., Ogata H., Suzuki K. Endo H., Ogata H., Suzuki K. Contrasting biogeography and diversity patterns between diatoms and haptophytes in the central Pacific Ocean. Contrasting biogeography and diversity patterns between diatoms and haptophytes in the central Pacific Ocean. Contrasting biogeography and diversity patterns between diatoms and haptophytes in the central Pacific Ocean. Sci. Rep. Sci. Rep. Sci. Rep. 2018 Refereed English Research paper(scientific journal) Disclose to all
Nishiyama H., Nagai T., Kudo M., Okazaki Y., Azuma Y., Watanabe T., Susumu G., Ogata H., Sakurai T. Nishiyama H., Nagai T., Kudo M., Okazaki Y., Azuma Y., Watanabe T., Susumu G., Ogata H., Sakurai T. Nishiyama H., Nagai T., Kudo M., Okazaki Y., Azuma Y., Watanabe T., Susumu G., Ogata H., Sakurai T. Supplementation of pancreatic digestive enzymes alters the composition of intestinal microbiota in mice. Supplementation of pancreatic digestive enzymes alters the composition of intestinal microbiota in mice. Supplementation of pancreatic digestive enzymes alters the composition of intestinal microbiota in mice. Biochem.Biophys.Res.Commun., 495, 1, 273-279 Biochem.Biophys.Res.Commun., 495, 1, 273-279 Biochem.Biophys.Res.Commun., 495, 1, 273-279 2018 Refereed English Disclose to all
Yoshida T., Nishimura Y., Watai H., Haruki N., Morimoto D., Kaneko H., Honda T., Yamamoto K., Hingamp P., Sako Y., Goto S., Ogata H. Yoshida T., Nishimura Y., Watai H., Haruki N., Morimoto D., Kaneko H., Honda T., Yamamoto K., Hingamp P., Sako Y., Goto S., Ogata H. Yoshida T., Nishimura Y., Watai H., Haruki N., Morimoto D., Kaneko H., Honda T., Yamamoto K., Hingamp P., Sako Y., Goto S., Ogata H. Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan. Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan. Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan. ISME J., doi:10., 1038/s41396-018-0052-x ISME J., doi:10., 1038/s41396-018-0052-x ISME J., doi:10., 1038/s41396-018-0052-x 2018 Refereed English Research paper(scientific journal) Disclose to all
Mihara T., Koyano H., Hingamp P., Grimsley N., Goto S., Ogata H. Mihara T., Koyano H., Hingamp P., Grimsley N., Goto S., Ogata H. Mihara T., Koyano H., Hingamp P., Grimsley N., Goto S., Ogata H. Taxon richness of "Megaviridae" exceeds those of Bacteria and Archaea in the ocean. Taxon richness of "Megaviridae" exceeds those of Bacteria and Archaea in the ocean. Taxon richness of "Megaviridae" exceeds those of Bacteria and Archaea in the ocean. Microbes Environ., doi:10., 1264/jsme2.ME17203 Microbes Environ., doi:10., 1264/jsme2.ME17203 Microbes Environ., doi:10., 1264/jsme2.ME17203 2018 Refereed English Research paper(scientific journal) Disclose to all
Shimizu Y., Ogata H., Goto S. Shimizu Y., Ogata H., Goto S. Shimizu Y., Ogata H., Goto S. Type III polyketide synthases: functional classification and phylogenomics Type III polyketide synthases: functional classification and phylogenomics Type III polyketide synthases: functional classification and phylogenomics ChemBioChem, 18, 50-65 ChemBioChem, 18, 50-65 ChemBioChem, 18, 50-65 2017 Refereed English Research paper(scientific journal) Disclose to all
Hiroyuki Ogata 緒方 博之 Hiroyuki Ogata Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition. Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition. Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition. Sci.Date, 4, 170093 Sci.Date, 4, 170093 Sci.Date, 4, 170093 2017 Refereed English Research paper(scientific journal) Disclose to all
武村政春, 緒方博之 武村政春, 緒方博之 武村政春, 緒方博之 【特集にあたって】知られざるウイルスの世界をあばく 【特集にあたって】知られざるウイルスの世界をあばく 【特集にあたって】知られざるウイルスの世界をあばく 生物の科学 遺伝, 69, 264-267 生物の科学 遺伝, 69, 264-267 生物の科学 遺伝, 69, 264-267 2015 Japanese Disclose to all
三原知子, 五斗進, 緒方博之 三原知子, 五斗進, 緒方博之 三原知子, 五斗進, 緒方博之 海洋巨大ウイルス―ゲノムから見えたきた多様性と生態 海洋巨大ウイルス―ゲノムから見えたきた多様性と生態 海洋巨大ウイルス―ゲノムから見えたきた多様性と生態 生物の科学 遺伝, 69, 318-325 生物の科学 遺伝, 69, 318-325 生物の科学 遺伝, 69, 318-325 2015 Japanese Disclose to all
緒方博之, 武村政春 緒方博之, 武村政春 緒方博之, 武村政春 巨大ウイルスがもたらしたパンドラの箱 巨大ウイルスがもたらしたパンドラの箱 巨大ウイルスがもたらしたパンドラの箱 生物の科学 遺伝, 68, 194-199 生物の科学 遺伝, 68, 194-199 生物の科学 遺伝, 68, 194-199 2014 Japanese Disclose to all
Ogata H. 緒方博之 Ogata H. Bioinformatics in France. フランスのバイオインフォマティクス事情 Bioinformatics in France. Japanese Society for Bioinformatics News Letter, 11 Japanese Society for Bioinformatics News Letter, 11 Japanese Society for Bioinformatics News Letter, 11 2005 Refereed Japanese Disclose to all
Ogata H. Ogata H. Ogata H. Other sequence analysis tools. Other sequence analysis tools. Other sequence analysis tools. Introduction to GenomeNet Databases, 2nd edition Introduction to GenomeNet Databases, 2nd edition Introduction to GenomeNet Databases, 2nd edition 1998 Refereed English Disclose to all
Ogata H, Kanehisa M. 緒方博之、金久實 Ogata H, Kanehisa M. Function analysis using protein databases. タンパク質データベース利用による機能解析 Function analysis using protein databases. Biophysics, 36, 152-154 生物物理, 36, 152-154 Biophysics, 36, 152-154 1996 Refereed English Disclose to all
Ogata H, Kanehisa M. 緒方博之、金久實 Ogata H, Kanehisa M. Homology search. ホモロジーサーチ Homology search. Inflammation & Immunology, 3, 423-429 炎症と免疫, 3, 423-429 Inflammation & Immunology, 3, 423-429 1995 Refereed English Disclose to all
Shimizu Y., Ogata H., Goto S. Shimizu Y., Ogata H., Goto S. Discriminating the reaction types of plant type III polyketide synthases Discriminating the reaction types of plant type III polyketide synthases Bioinformatics Bioinformatics 2017/03 Refereed English Research paper(scientific journal) Disclose to all
Nishimura Y., Yoshida T., Kuronishi M., Uehara H., Ogata H., Goto S. Nishimura Y., Yoshida T., Kuronishi M., Uehara H., Ogata H., Goto S. ViPTree: the viral proteomic tree server ViPTree: the viral proteomic tree server Bioinformatics Bioinformatics 2017/03 Refereed English Research paper(scientific journal) Disclose to all
Nishimura Y., Watai H., Honda T., Mihara T., Omae K., Roux S., Blanc-Mathieu R., Yamamoto K., Hingamp P., Sako Y., Sullivan M.B., Goto S., Ogata H., Yoshida T. Nishimura Y., Watai H., Honda T., Mihara T., Omae K., Roux S., Blanc-Mathieu R., Yamamoto K., Hingamp P., Sako Y., Sullivan M.B., Goto S., Ogata H., Yoshida T. Environmental viral genomes shed new light on virus-host interactions in the ocean Environmental viral genomes shed new light on virus-host interactions in the ocean mSphere, 2, e00359-16 , 2, e00359-16 mSphere, 2, e00359-16 2017 Refereed English Research paper(scientific journal) Disclose to all
Matsui T., Yoshikawa G.,, Mihara T., Chatchawankanphanich O., Kawasaki T., Nakano M., Fujie M., Ogata H., Yamada T. Matsui T., Yoshikawa G.,, Mihara T., Chatchawankanphanich O., Kawasaki T., Nakano M., Fujie M., Ogata H., Yamada T. Replications of two closely related groups of jumbo phages show different level of dependence on host-encoded RNA polymerase Replications of two closely related groups of jumbo phages show different level of dependence on host-encoded RNA polymerase Front. Microbiol., 8, 1010 , 8, 1010 Front. Microbiol., 8, 1010 2017 Refereed English Research paper(scientific journal) Disclose to all
Roux S., Brum J.R., Dutilh B.E., Sunagawa S., Duhaime M.B., Loy A., Poulos B.T., Solonenko N., Lara E., Poulain J., Pesant S., Kandels-Lewis S., Dimier C., Picheral M., Searson S., Cruaud C., Alberti A., Duarte C.M., Gasol J.M., Vaque D.; Tara Oceans Coordinators, Bork P., Acinas S.G., Wincker P., Sullivan M.B. Roux S., Brum J.R., Dutilh B.E., Sunagawa S., Duhaime M.B., Loy A., Poulos B.T., Solonenko N., Lara E., Poulain J., Pesant S., Kandels-Lewis S., Dimier C., Picheral M., Searson S., Cruaud C., Alberti A., Duarte C.M., Gasol J.M., Vaque D.; Tara Oceans Coordinators, Bork P., Acinas S.G., Wincker P., Sullivan M.B. Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses Nature, 537, 689-693 , 537, 689-693 Nature, 537, 689-693 2016 Refereed English Research paper(scientific journal) Disclose to all
Mihara T., Nasr-Eldin M.A., Chatchawankanphanich O., Bhunchoth A., Phironrit N., Kawasaki T., Nakano M., Fujie M., Ogata H., Yamada T. Mihara T., Nasr-Eldin M.A., Chatchawankanphanich O., Bhunchoth A., Phironrit N., Kawasaki T., Nakano M., Fujie M., Ogata H., Yamada T. A Ralstonia solanacearum phage phiRP15 is closely related to Viunalikeviruses and encodes 19 tRNA-related sequences A Ralstonia solanacearum phage phiRP15 is closely related to Viunalikeviruses and encodes 19 tRNA-related sequences Virol. Rep., 6, 61-73 , 6, 61-73 Virol. Rep., 6, 61-73 2016 Refereed English Research paper(scientific journal) Disclose to all
Lescot M., Hingamp P., Kojima K.K., Villar E., Romac S., Veluchamy A., Boccara M., Jaillon O., Iudicone D., Bowler C., Wincker P., Claverie J.-M., Ogata H. Lescot M., Hingamp P., Kojima K.K., Villar E., Romac S., Veluchamy A., Boccara M., Jaillon O., Iudicone D., Bowler C., Wincker P., Claverie J.-M., Ogata H. Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages ISME J., 10, 1134-1146 , 10, 1134-1146 ISME J., 10, 1134-1146 2016 Refereed English Research paper(scientific journal) Disclose to all
Guidi L., Chaffron S., Bittner L., Eveillard D., Larhlimi A., Roux S., Darzi Y., Audic S., Berline L., Brum J., Coelho L.P., Espinoza J.C., Malviya S., Sunagawa S., Dimier C., Kandels-Lewis S., Picheral M., Poulain J., Searson S.; Tara Oceans Consortium Coordinators, Stemmann L., Not F., Hingamp P., Speich S., Follows M., Karp-Boss L., Boss E., Ogata H., Pesant S., Weissenbach J., Wincker P., Acinas S.G., Bork P., de Vargas C., Iudicone D., Sullivan M.B., Raes J., Karsenti E., Bowler C., Gorsky G. Guidi L., Chaffron S., Bittner L., Eveillard D., Larhlimi A., Roux S., Darzi Y., Audic S., Berline L., Brum J., Coelho L.P., Espinoza J.C., Malviya S., Sunagawa S., Dimier C., Kandels-Lewis S., Picheral M., Poulain J., Searson S.; Tara Oceans Consortium Coordinators, Stemmann L., Not F., Hingamp P., Speich S., Follows M., Karp-Boss L., Boss E., Ogata H., Pesant S., Weissenbach J., Wincker P., Acinas S.G., Bork P., de Vargas C., Iudicone D., Sullivan M.B., Raes J., Karsenti E., Bowler C., Gorsky G. Plankton networks driving carbon export in the oligotrophic ocean Plankton networks driving carbon export in the oligotrophic ocean Nature, 532, 465-470 , 532, 465-470 Nature, 532, 465-470 2016 Refereed English Research paper(scientific journal) Disclose to all
Blanc-Mathieu R., Ogata H. Blanc-Mathieu R., Ogata H. DNA repair genes in the Megavirales pangenome DNA repair genes in the Megavirales pangenome Curr. Opin. Microbiol., 31, 94-100 , 31, 94-100 Curr. Opin. Microbiol., 31, 94-100 2016 Refereed English Research paper(scientific journal) Disclose to all
Mihara T., Nishimura Y., Shimizu Y., Nishiyama H., Yoshikawa G., Uehara H., Hingamp P., Goto S, Ogata H. Mihara T., Nishimura Y., Shimizu Y., Nishiyama H., Yoshikawa G., Uehara H., Hingamp P., Goto S, Ogata H. Linking virus genomes with host taxonomy Linking virus genomes with host taxonomy Viruses, 8, 66 , 8, 66 Viruses, 8, 66 2016 Refereed English Research paper(scientific journal) Disclose to all
Bhunchoth A., Blanc-Mathieu R., Mihara T., Nishimura Y, Askora A., Phironrit N., Leksomboon C., Chatchawankanphanich O., Kawasaki T., Nakano M., Fujie M., Ogata H., Yamada Y. Bhunchoth A., Blanc-Mathieu R., Mihara T., Nishimura Y, Askora A., Phironrit N., Leksomboon C., Chatchawankanphanich O., Kawasaki T., Nakano M., Fujie M., Ogata H., Yamada Y. Two asian jumbo phages, phiRSL2 and phiRSF1, infect Ralstonia solanacearum and show common features of phiKZ-related phages Two asian jumbo phages, phiRSL2 and phiRSF1, infect Ralstonia solanacearum and show common features of phiKZ-related phages Virology, 494, 56-66 , 494, 56-66 Virology, 494, 56-66 2016 Refereed English Research paper(scientific journal) Disclose to all
Forster D., Dunthorn M., Mahe F., Dolan J.R., Audic S., Bass D., Bittner L., Boutte C., Christen R., Claverie J.-M., Decelle J., Edvardsen B., Egge E., Eikrem W., Gobet A., Kooistra W.H.C.F., Logares R., Massana R., Montresor M., Not F., Ogata H., Pawlowski J., Pernice M.C., Romac S., Shalchian-Tabrizi K., Simon N., Richards T.A., Santini S., Sarno D., Siano R., Vaulot D., Wincker P., Zingone A., de Vargas C., Stoeck T. Forster D., Dunthorn M., Mahe F., Dolan J.R., Audic S., Bass D., Bittner L., Boutte C., Christen R., Claverie J.-M., Decelle J., Edvardsen B., Egge E., Eikrem W., Gobet A., Kooistra W.H.C.F., Logares R., Massana R., Montresor M., Not F., Ogata H., Pawlowski J., Pernice M.C., Romac S., Shalchian-Tabrizi K., Simon N., Richards T.A., Santini S., Sarno D., Siano R., Vaulot D., Wincker P., Zingone A., de Vargas C., Stoeck T. Benthic protists: the under-charted majority Benthic protists: the under-charted majority FEMS Microbiol. Ecol., 92 , 92 FEMS Microbiol. Ecol., 92 2016 Refereed English Research paper(scientific journal) Disclose to all
von Dassow P, John U, Ogata H, Probert I, Bendif EM, Kegel JU, Audic S, Wincker P, Da Silva C, Claverie JM, Doney S, Glover DM, Flores DM, Herrera Y, Lescot M, Garet-Delmas MJ, de Vargas C. von Dassow P, John U, Ogata H, Probert I, Bendif EM, Kegel JU, Audic S, Wincker P, Da Silva C, Claverie JM, Doney S, Glover DM, Flores DM, Herrera Y, Lescot M, Garet-Delmas MJ, de Vargas C. Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton. Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton. ISME J, 9, 1365-1377 , 9, 1365-1377 ISME J, 9, 1365-1377 2015/06 Refereed English Research paper(scientific journal) Disclose to all
Pesant S, Not F, Picheral M, Kandels-Lewis S, Le Bescot N, Gorsky G, Iudicone D, Karsenti E, Speich S, Trouble R, Dimier C, Searson S. Pesant S, Not F, Picheral M, Kandels-Lewis S, Le Bescot N, Gorsky G, Iudicone D, Karsenti E, Speich S, Trouble R, Dimier C, Searson S. Open science resources for the discovery and analysis of Tara Oceans data. Open science resources for the discovery and analysis of Tara Oceans data. Sci Data, 2, 150023-150023 , 2, 150023-150023 Sci Data, 2, 150023-150023 2015/05 Refereed English Research paper(scientific journal) Disclose to all
Sunagawa S, Coelho LP, Chaffron S, Kultima JR, Labadie K, Salazar G, Djahanschiri B, Zeller G, Mende DR, Alberti A, Cornejo-Castillo FM, Costea PI, Cruaud C, d'Ovidio F, Engelen S, Ferrera I, Gasol JM, Guidi L, Hildebrand F, Kokoszka F, Lepoivre C, Lima-Mendez G, Poulain J, Poulos BT, Royo-Llonch M, Sarmento H, Vieira-Silva S, Dimier C, Picheral M, Searson S, Kandels-Lewis S, Bowler C, de Vargas C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Jaillon O, Not F, Ogata H, Pesant S, Speich S, Stemmann L, Sullivan MB, Weissenbach J, Wincker P, Karsenti E, Raes J, Acinas SG, Bork P. Sunagawa S, Coelho LP, Chaffron S, Kultima JR, Labadie K, Salazar G, Djahanschiri B, Zeller G, Mende DR, Alberti A, Cornejo-Castillo FM, Costea PI, Cruaud C, d'Ovidio F, Engelen S, Ferrera I, Gasol JM, Guidi L, Hildebrand F, Kokoszka F, Lepoivre C, Lima-Mendez G, Poulain J, Poulos BT, Royo-Llonch M, Sarmento H, Vieira-Silva S, Dimier C, Picheral M, Searson S, Kandels-Lewis S, Bowler C, de Vargas C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Jaillon O, Not F, Ogata H, Pesant S, Speich S, Stemmann L, Sullivan MB, Weissenbach J, Wincker P, Karsenti E, Raes J, Acinas SG, Bork P. Ocean plankton. Structure and function of the global ocean microbiome. Ocean plankton. Structure and function of the global ocean microbiome. Science, 348, 1261359-1261359 , 348, 1261359-1261359 Science, 348, 1261359-1261359 2015/05 Refereed English Research paper(scientific journal) Disclose to all
Villar E, Farrant GK, Follows M, Garczarek L, Speich S, Audic S, Bittner L, Blanke B, Brum JR, Brunet C, Casotti R, Chase A, Dolan JR, d'Ortenzio F, Gattuso JP, Grima N, Guidi L, Hill CN, Jahn O, Jamet JL, Le Goff H, Lepoivre C, Malviya S, Pelletier E, Romagnan JB, Roux S, Santini S, Scalco E, Schwenck SM, Tanaka A, Testor P, Vannier T, Vincent F, Zingone A, Dimier C, Picheral M, Searson S, Kandels-Lewis S, Acinas SG, Bork P, Boss E, de Vargas C, Gorsky G, Ogata H, Pesant S, Sullivan MB, Sunagawa S, Wincker P, Karsenti E, Bowler C, Not F, Hingamp P, Iudicone D. Villar E, Farrant GK, Follows M, Garczarek L, Speich S, Audic S, Bittner L, Blanke B, Brum JR, Brunet C, Casotti R, Chase A, Dolan JR, d'Ortenzio F, Gattuso JP, Grima N, Guidi L, Hill CN, Jahn O, Jamet JL, Le Goff H, Lepoivre C, Malviya S, Pelletier E, Romagnan JB, Roux S, Santini S, Scalco E, Schwenck SM, Tanaka A, Testor P, Vannier T, Vincent F, Zingone A, Dimier C, Picheral M, Searson S, Kandels-Lewis S, Acinas SG, Bork P, Boss E, de Vargas C, Gorsky G, Ogata H, Pesant S, Sullivan MB, Sunagawa S, Wincker P, Karsenti E, Bowler C, Not F, Hingamp P, Iudicone D. Ocean plankton. Environmental characteristics of Agulhas rings affect interocean plankton transport. Ocean plankton. Environmental characteristics of Agulhas rings affect interocean plankton transport. Science, 348, 1261447-1261447 , 348, 1261447-1261447 Science, 348, 1261447-1261447 2015/05 Refereed English Research paper(scientific journal) Disclose to all
Brum JR, Ignacio-Espinoza JC, Roux S, Doulcier G, Acinas SG, Alberti A, Chaffron S, Cruaud C, de Vargas C, Gasol JM, Gorsky G, Gregory AC, Guidi L, Hingamp P, Iudicone D, Not F, Ogata H, Pesant S, Poulos BT, Schwenck SM, Speich S, Dimier C, Kandels-Lewis S, Picheral M, Searson S, Bork P, Bowler C, Sunagawa S, Wincker P, Karsenti E, Sullivan MB. Brum JR, Ignacio-Espinoza JC, Roux S, Doulcier G, Acinas SG, Alberti A, Chaffron S, Cruaud C, de Vargas C, Gasol JM, Gorsky G, Gregory AC, Guidi L, Hingamp P, Iudicone D, Not F, Ogata H, Pesant S, Poulos BT, Schwenck SM, Speich S, Dimier C, Kandels-Lewis S, Picheral M, Searson S, Bork P, Bowler C, Sunagawa S, Wincker P, Karsenti E, Sullivan MB. Ocean plankton. Patterns and ecological drivers of ocean viral communities. Ocean plankton. Patterns and ecological drivers of ocean viral communities. Science, 348, 1261498-1261498 , 348, 1261498-1261498 Science, 348, 1261498-1261498 2015/05 Refereed English Research paper(scientific journal) Disclose to all
de Vargas C, Audic S, Henry N, Decelle J, Mahe F, Logares R, Lara E, Berney C, Le Bescot N, Probert I, Carmichael M, Poulain J, Romac S, Colin S, Aury JM, Bittner L, Chaffron S, Dunthorn M, Engelen S, Flegontova O, Guidi L, Horak A, Jaillon O, Lima-Mendez G, Lukes J, Malviya S, Morard R, Mulot M, Scalco E, Siano R, Vincent F, Zingone A, Dimier C, Picheral M, Searson S, Kandels-Lewis S, Acinas SG, Bork P, Bowler C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Not F, Ogata H, Pesant S, Raes J, Sieracki ME, Speich S, Stemmann L, Sunagawa S, Weissenbach J, Wincker P, Karsenti E. de Vargas C, Audic S, Henry N, Decelle J, Mahe F, Logares R, Lara E, Berney C, Le Bescot N, Probert I, Carmichael M, Poulain J, Romac S, Colin S, Aury JM, Bittner L, Chaffron S, Dunthorn M, Engelen S, Flegontova O, Guidi L, Horak A, Jaillon O, Lima-Mendez G, Lukes J, Malviya S, Morard R, Mulot M, Scalco E, Siano R, Vincent F, Zingone A, Dimier C, Picheral M, Searson S, Kandels-Lewis S, Acinas SG, Bork P, Bowler C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Not F, Ogata H, Pesant S, Raes J, Sieracki ME, Speich S, Stemmann L, Sunagawa S, Weissenbach J, Wincker P, Karsenti E. Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean. Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean. Science, 348, 1261605-1261605 , 348, 1261605-1261605 Science, 348, 1261605-1261605 2015/05 Refereed English Research paper(scientific journal) Disclose to all
Lima-Mendez G, Faust K, Henry N, Decelle J, Colin S, Carcillo F, Chaffron S, Ignacio-Espinosa JC, Roux S, Vincent F, Bittner L, Darzi Y, Wang J, Audic S, Berline L, Bontempi G, Cabello AM, Coppola L, Cornejo-Castillo FM, d'Ovidio F, De Meester L, Ferrera I, Garet-Delmas MJ, Guidi L, Lara E, Pesant S, Royo-Llonch M, Salazar G, Sanchez P, Sebastian M, Souffreau C, Dimier C, Picheral M, Searson S, Kandels-Lewis S, Gorsky G, Not F, Ogata H, Speich S, Stemmann L, Weissenbach J, Wincker P, Acinas SG, Sunagawa S, Bork P, Sullivan MB, Karsenti E, Bowler C, de Vargas C, Raes J. Lima-Mendez G, Faust K, Henry N, Decelle J, Colin S, Carcillo F, Chaffron S, Ignacio-Espinosa JC, Roux S, Vincent F, Bittner L, Darzi Y, Wang J, Audic S, Berline L, Bontempi G, Cabello AM, Coppola L, Cornejo-Castillo FM, d'Ovidio F, De Meester L, Ferrera I, Garet-Delmas MJ, Guidi L, Lara E, Pesant S, Royo-Llonch M, Salazar G, Sanchez P, Sebastian M, Souffreau C, Dimier C, Picheral M, Searson S, Kandels-Lewis S, Gorsky G, Not F, Ogata H, Speich S, Stemmann L, Weissenbach J, Wincker P, Acinas SG, Sunagawa S, Bork P, Sullivan MB, Karsenti E, Bowler C, de Vargas C, Raes J. Ocean plankton. Determinants of community structure in the global plankton interactome. Ocean plankton. Determinants of community structure in the global plankton interactome. Science, 348, 1262073-1262073 , 348, 1262073-1262073 Science, 348, 1262073-1262073 2015/05 Refereed English Research paper(scientific journal) Disclose to all
Nissimov JI, Worthy CA, Rooks P, Napier JA, Kimmance SA, Henn MR, Ogata H, Allen MJ. Nissimov JI, Worthy CA, Rooks P, Napier JA, Kimmance SA, Henn MR, Ogata H, Allen MJ. Draft genome sequence of four coccolithoviruses: Emiliania huxleyi virus EhV-88, EhV-201, EhV-207, and EhV-208. Draft genome sequence of four coccolithoviruses: Emiliania huxleyi virus EhV-88, EhV-201, EhV-207, and EhV-208. J Virol, 86, 2896-2897 , 86, 2896-2897 J Virol, 86, 2896-2897 2015/05 Refereed English Research paper(scientific journal) Disclose to all
Johannessen TV, Bratbak G, Larsen A, Ogata H, Egge ES, Edvardsen B, Eikrem W, Sandaa RA. Johannessen TV, Bratbak G, Larsen A, Ogata H, Egge ES, Edvardsen B, Eikrem W, Sandaa RA. Characterisation of three novel giant viruses reveals huge diversity among viruses infecting Prymnesiales (Haptophyta). Characterisation of three novel giant viruses reveals huge diversity among viruses infecting Prymnesiales (Haptophyta). Virology, 467, 180-188 , 467, 180-188 Virology, 467, 180-188 2015/02 Refereed English Research paper(scientific journal) Disclose to all
Clerissi C., Desdevises Y., Romac S., Audic S., de Vargas C., Acinas S.G., Casotti R., Poulain J., Wincker P., Hingamp P., Ogata H., Grimsley N. Clerissi C., Desdevises Y., Romac S., Audic S., de Vargas C., Acinas S.G., Casotti R., Poulain J., Wincker P., Hingamp P., Ogata H., Grimsley N. Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes Environ. Microbiol. Rep., 7, 979-989 , 7, 979-989 Environ. Microbiol. Rep., 7, 979-989 2015 Refereed English Research paper(scientific journal) Disclose to all
Massana R., Gobet A., Audic S., Bass D., Bittner L., Boutte C., Chambouvet A., Christen R., Claverie J.-M., Decelle J., Dolan J.R., Dunthorn M., Edvardsen B., Forn I., Forster D., Guillou L., Jaillon O., Kooistra W.H., Logares R., Mahe F., Not F., Ogata H., Pawlowski J., Pernice M.C., Probert I., Romac S., Richards T., Santini S., Shalchian-Tabrizi K., Siano R., Simon N., Stoeck T., Vaulot D., Zingone A., de Vargas C. Massana R., Gobet A., Audic S., Bass D., Bittner L., Boutte C., Chambouvet A., Christen R., Claverie J.-M., Decelle J., Dolan J.R., Dunthorn M., Edvardsen B., Forn I., Forster D., Guillou L., Jaillon O., Kooistra W.H., Logares R., Mahe F., Not F., Ogata H., Pawlowski J., Pernice M.C., Probert I., Romac S., Richards T., Santini S., Shalchian-Tabrizi K., Siano R., Simon N., Stoeck T., Vaulot D., Zingone A., de Vargas C. Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing Environ. Microbiol., 17, 4035-4049 , 17, 4035-4049 Environ. Microbiol., 17, 4035-4049 2015 Refereed English Research paper(scientific journal) Disclose to all
Kopf A, Bicak M, Kottmann R, Schnetzer J, Kostadinov I, Lehmann K, Fernandez-Guerra A, Jeanthon C, Rahav E, Ullrich M, Wichels A, Gerdts G, Polymenakou P, Kotoulas G, Siam R, Abdallah R.Z, Sonnenschein E.C, Cariou T, O'Gara F, Jackson S, Orlic S, Steinke M, Busch J, Duarte B, Cacador I, Canning-Clode J, Bobrova O, Marteinsson V, Reynisson E, Loureiro C.M, Luna G.M, Quero G.M, Loscher C.R, Kremp A, DeLorenzo M.E, Ovreas L, Tolman J, LaRoche J, Penna A, Frischer M, Davis T, Katherine B, Meyer C.P, Ramos S, Magalhaes C, Jude-Lemeilleur F, Aguirre-Macedo M.L, Wang S, Poulton N, Jones S, Collin R, Fuhrman J.A, Conan P, Alonso C, Stambler N, Goodwin K, Yakimov M.M, Baltar F, Bodrossy L, Van De Kamp J, Frampton D.M.F, Ostrowski M, Van Ruth P, Malthouse P, Claus S, Deneudt K, Mortelmans J, Pitois S, Wallom D, Salter I, Costa R, Schroeder D.C, Kandil M.M, Amaral V, Biancalana F, Santana R, Pedrotti M.L, Yoshida T, Ogata H, Ingleton T, Munnik K, Rodriguez-Ezpeleta N, Berteaux-Lecellier V, Wecker P, Cancio I, Vaulot D, Bienhold C, Ghazal H, Chaouni B, Essayeh S, Ettamimi S, Zaid E.H, Boukhatem N, Bouali A, Chahboune R, Barrijal S, Timinouni M, El Otmani F, Bennani M, Mea M, Todorova N, Karamfilov V, ten Hoopen P, Cochrane G, L'Haridon S, Bizsel K.C, Vezzi A, Lauro F.M, Martin P, Jensen R.M, Hinks J, Gebbels S, Rosselli R, De Pascale F, Schiavon R, dos Santos A, Villar E, Pesant S, Cataletto B, Malfatti F, Edirisinghe R, Silveira J.A.H, Barbier M, Turk V, Tinta T, Fuller W.J, Salihoglu I, Serakinci N, Ergoren M.C, Bresnan E, Iriberri J, Nyhus P.A.F, B. Edvardsen, Karlsen H.E, Golyshin P.N, Gasol J.M, Moncheva S, Dzhembekova N, Johnson Z, Sinigalliano C.D, Gidley M.L, Zingone A, Danovaro R, Tsiamis G, Clark M.S, Costa A.C, El Bour M, Martins A.M, Collins E.R, Ducluzeau A.-L, Martinez J, Costello M.J, Amaral-Zettler L.A, Gilbert J.A, Davies N, Field D, Glockner F.O. Kopf A, Bicak M, Kottmann R, Schnetzer J, Kostadinov I, Lehmann K, Fernandez-Guerra A, Jeanthon C, Rahav E, Ullrich M, Wichels A, Gerdts G, Polymenakou P, Kotoulas G, Siam R, Abdallah R.Z, Sonnenschein E.C, Cariou T, O'Gara F, Jackson S, Orlic S, Steinke M, Busch J, Duarte B, Cacador I, Canning-Clode J, Bobrova O, Marteinsson V, Reynisson E, Loureiro C.M, Luna G.M, Quero G.M, Loscher C.R, Kremp A, DeLorenzo M.E, Ovreas L, Tolman J, LaRoche J, Penna A, Frischer M, Davis T, Katherine B, Meyer C.P, Ramos S, Magalhaes C, Jude-Lemeilleur F, Aguirre-Macedo M.L, Wang S, Poulton N, Jones S, Collin R, Fuhrman J.A, Conan P, Alonso C, Stambler N, Goodwin K, Yakimov M.M, Baltar F, Bodrossy L, Van De Kamp J, Frampton D.M.F, Ostrowski M, Van Ruth P, Malthouse P, Claus S, Deneudt K, Mortelmans J, Pitois S, Wallom D, Salter I, Costa R, Schroeder D.C, Kandil M.M, Amaral V, Biancalana F, Santana R, Pedrotti M.L, Yoshida T, Ogata H, Ingleton T, Munnik K, Rodriguez-Ezpeleta N, Berteaux-Lecellier V, Wecker P, Cancio I, Vaulot D, Bienhold C, Ghazal H, Chaouni B, Essayeh S, Ettamimi S, Zaid E.H, Boukhatem N, Bouali A, Chahboune R, Barrijal S, Timinouni M, El Otmani F, Bennani M, Mea M, Todorova N, Karamfilov V, ten Hoopen P, Cochrane G, L'Haridon S, Bizsel K.C, Vezzi A, Lauro F.M, Martin P, Jensen R.M, Hinks J, Gebbels S, Rosselli R, De Pascale F, Schiavon R, dos Santos A, Villar E, Pesant S, Cataletto B, Malfatti F, Edirisinghe R, Silveira J.A.H, Barbier M, Turk V, Tinta T, Fuller W.J, Salihoglu I, Serakinci N, Ergoren M.C, Bresnan E, Iriberri J, Nyhus P.A.F, B. Edvardsen, Karlsen H.E, Golyshin P.N, Gasol J.M, Moncheva S, Dzhembekova N, Johnson Z, Sinigalliano C.D, Gidley M.L, Zingone A, Danovaro R, Tsiamis G, Clark M.S, Costa A.C, El Bour M, Martins A.M, Collins E.R, Ducluzeau A.-L, Martinez J, Costello M.J, Amaral-Zettler L.A, Gilbert J.A, Davies N, Field D, Glockner F.O. The ocean sampling day consortium. The ocean sampling day consortium. GigaScience, 4, 27-27 , 4, 27-27 GigaScience, 4, 27-27 2015 Refereed English Research paper(scientific journal) Disclose to all
Takemura M, Yokobori S, Ogata H. Takemura M, Yokobori S, Ogata H. Evolution of eukaryotic DNA polymerases via interaction between cells and large DNA viruses. Evolution of eukaryotic DNA polymerases via interaction between cells and large DNA viruses. J. Mol. Evol. J. Mol. Evol. 2015 Refereed English Research paper(scientific journal) Disclose to all
Gallot-Lavallee L., Pagarete A., Legendre M., Santini S., Sandaa R.-A., Himmelbauer H., Ogata H., Bratbak G., Claverie J.-M. Gallot-Lavallee L., Pagarete A., Legendre M., Santini S., Sandaa R.-A., Himmelbauer H., Ogata H., Bratbak G., Claverie J.-M. The 474-kilobase-pair complete genome sequence of CeV-01B, a virus infecting Haptolina (Chrysochromulina) ericina (Prymnesiophyceae) The 474-kilobase-pair complete genome sequence of CeV-01B, a virus infecting Haptolina (Chrysochromulina) ericina (Prymnesiophyceae) Genome Announc., 3, e01413-e01415 , 3, e01413-e01415 Genome Announc., 3, e01413-e01415 2015 Refereed English Research paper(scientific journal) Disclose to all
Ben Halima N., Khemakhem B., Fendri I., Ogata H., Baril P., Pichon C., Abdelkafi S. Ben Halima N., Khemakhem B., Fendri I., Ogata H., Baril P., Pichon C., Abdelkafi S. Identification of a new oat beta-amylase by functional proteomics Identification of a new oat beta-amylase by functional proteomics Biochim. Biophys. Acta, 1864, 52-61 , 1864, 52-61 Biochim. Biophys. Acta, 1864, 52-61 2015 Refereed English Research paper(scientific journal) Disclose to all
Wilson WH, Gilg IC, Duarte A, Ogata H. Wilson WH, Gilg IC, Duarte A, Ogata H. Development of DNA mismatch repair gene, MutS, as a diagnostic marker for detection and phylogenetic analysis of algal Megaviruses. Development of DNA mismatch repair gene, MutS, as a diagnostic marker for detection and phylogenetic analysis of algal Megaviruses. Virology, 466-467, 123-128 , 466-467, 123-128 Virology, 466-467, 123-128 2014/10 Refereed English Research paper(scientific journal) Disclose to all
Clerissi C, Grimsley N, Subirana L, Maria E, Oriol L, Ogata H, Moreau H, Desdevises Y. Clerissi C, Grimsley N, Subirana L, Maria E, Oriol L, Ogata H, Moreau H, Desdevises Y. Prasinovirus distribution in the Northwest Mediterranean Sea is affected by the environment and particularly by phosphate availability. Prasinovirus distribution in the Northwest Mediterranean Sea is affected by the environment and particularly by phosphate availability. Virology, 466-467, 146-157 , 466-467, 146-157 Virology, 466-467, 146-157 2014/10 Refereed English Research paper(scientific journal) Disclose to all
Logares R, Sunagawa S, Salazar G, Cornejo-Castillo FM, Ferrera I, Sarmento H, Hingamp P, Ogata H, de Vargas C, Lima-Mendez G, Raes J, Poulain J, Jaillon O, Wincker P, Kandels-Lewis S, Karsenti E, Bork P, Acinas SG. Logares R, Sunagawa S, Salazar G, Cornejo-Castillo FM, Ferrera I, Sarmento H, Hingamp P, Ogata H, de Vargas C, Lima-Mendez G, Raes J, Poulain J, Jaillon O, Wincker P, Kandels-Lewis S, Karsenti E, Bork P, Acinas SG. Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities. Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities. Environ Microbiol, 16, 2659-2671 , 16, 2659-2671 Environ Microbiol, 16, 2659-2671 2014/09 Refereed English Research paper(scientific journal) Disclose to all
Clerissi C, Grimsley N, Ogata H, Hingamp P, Poulain J, Desdevises Y. Clerissi C, Grimsley N, Ogata H, Hingamp P, Poulain J, Desdevises Y. Unveiling of the diversity of Prasinoviruses (Phycodnaviridae) in marine samples by using high-throughput sequencing analyses of PCR-amplified DNA polymerase and major capsid protein genes. Unveiling of the diversity of Prasinoviruses (Phycodnaviridae) in marine samples by using high-throughput sequencing analyses of PCR-amplified DNA polymerase and major capsid protein genes. Appl Environ Microbiol, 80, 3150-3160 , 80, 3150-3160 Appl Environ Microbiol, 80, 3150-3160 2014/05 Refereed English Research paper(scientific journal) Disclose to all
Logares R, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Gobet A, Kooistra WH, Mahe F, Not F, Ogata H, Pawlowski J, Pernice MC, Romac S, Shalchian-Tabrizi K, Simon N, Stoeck T, Santini S, Siano R, Wincker P, Zingone A, Richards TA, de Vargas C, Massana R. Logares R, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Gobet A, Kooistra WH, Mahe F, Not F, Ogata H, Pawlowski J, Pernice MC, Romac S, Shalchian-Tabrizi K, Simon N, Stoeck T, Santini S, Siano R, Wincker P, Zingone A, Richards TA, de Vargas C, Massana R. Patterns of rare and abundant marine microbial eukaryotes. Patterns of rare and abundant marine microbial eukaryotes. Curr Biol, 24, 813-821 , 24, 813-821 Curr Biol, 24, 813-821 2014/04 Refereed English Research paper(scientific journal) Disclose to all
Hingamp P, Grimsley N, Acinas SG, Clerissi C, Subirana L, Poulain J, Ferrera I, Sarmento H, Villar E, Lima-Mendez G, Faust K, Sunagawa S, Claverie JM, Moreau H, Desdevises Y, Bork P, Raes J, de Vargas C, Karsenti E, Kandels-Lewis S, Jaillon O, Not F, Pesant S, Wincker P, Ogata H. Hingamp P, Grimsley N, Acinas SG, Clerissi C, Subirana L, Poulain J, Ferrera I, Sarmento H, Villar E, Lima-Mendez G, Faust K, Sunagawa S, Claverie JM, Moreau H, Desdevises Y, Bork P, Raes J, de Vargas C, Karsenti E, Kandels-Lewis S, Jaillon O, Not F, Pesant S, Wincker P, Ogata H. Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes. Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes. ISME J, 7, 1678-1695 , 7, 1678-1695 ISME J, 7, 1678-1695 2013/09 Refereed English Research paper(scientific journal) Disclose to all
Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, Young J, Aguilar M, Claverie JM, Frickenhaus S, Gonzalez K, Herman EK, Lin YC, Napier J, Ogata H, Sarno AF, Shmutz J, Schroeder D, de Vargas C, Verret F, von Dassow P, Valentin K, Van de Peer Y, Wheeler G, Dacks JB, Delwiche CF, Dyhrman ST, Glockner G, John U, Richards T, Worden AZ, Zhang X, Grigoriev IV. Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, Young J, Aguilar M, Claverie JM, Frickenhaus S, Gonzalez K, Herman EK, Lin YC, Napier J, Ogata H, Sarno AF, Shmutz J, Schroeder D, de Vargas C, Verret F, von Dassow P, Valentin K, Van de Peer Y, Wheeler G, Dacks JB, Delwiche CF, Dyhrman ST, Glockner G, John U, Richards T, Worden AZ, Zhang X, Grigoriev IV. Pan genome of the phytoplankton Emiliania underpins its global distribution. Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature, 499, 209-213 , 499, 209-213 Nature, 499, 209-213 2013/07 Refereed English Research paper(scientific journal) Disclose to all
Bittner L, Gobet A, Audic S, Romac S, Egge ES, Santini S, Ogata H, Probert I, Edvardsen B, de Vargas C. Bittner L, Gobet A, Audic S, Romac S, Egge ES, Santini S, Ogata H, Probert I, Edvardsen B, de Vargas C. Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay. Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay. Mol Ecol, 22, 87-101 , 22, 87-101 Mol Ecol, 22, 87-101 2013/06 Refereed English Research paper(scientific journal) Disclose to all
Abdelkafi S, Abousalham A, Fendri I, Ogata H, Barouh N, Fouquet B, Scheirlinckx F, Villeneuve P, Carriere F. Abdelkafi S, Abousalham A, Fendri I, Ogata H, Barouh N, Fouquet B, Scheirlinckx F, Villeneuve P, Carriere F. Identification of a new phospholipase D in Carica papaya latex. Identification of a new phospholipase D in Carica papaya latex. Gene, 499, 243-249 , 499, 243-249 Gene, 499, 243-249 2012/05 Refereed English Research paper(scientific journal) Disclose to all
Nissimov JI, Worthy CA, Rooks P, Napier JA, Kimmance SA, Henn MR, Ogata H, Allen MJ. Nissimov JI, Worthy CA, Rooks P, Napier JA, Kimmance SA, Henn MR, Ogata H, Allen MJ. Draft genome sequence of the coccolithovirus Emiliania huxleyi virus 202. Draft genome sequence of the coccolithovirus Emiliania huxleyi virus 202. J Virol, 86, 2380-2381 , 86, 2380-2381 J Virol, 86, 2380-2381 2012/02 Refereed English Research paper(scientific journal) Disclose to all
Yoshida-Takashima Y, Yoshida M, Ogata H, Nagasaki K, Hiroishi S, Yoshida T. Yoshida-Takashima Y, Yoshida M, Ogata H, Nagasaki K, Hiroishi S, Yoshida T. Cyanophage infection in the bloom-forming cyanobacteria Microcystis aeruginosa in surface freshwater. Cyanophage infection in the bloom-forming cyanobacteria Microcystis aeruginosa in surface freshwater. Microbes Environ, 27, 350-355 , 27, 350-355 Microbes Environ, 27, 350-355 2012 Refereed English Research paper(scientific journal) Disclose to all
Hamacher K, Greiner T, Ogata H, Van Etten JL, Gebhardt M, Villarreal LP, Cosentino C, Moroni A, Thiel G. Hamacher K, Greiner T, Ogata H, Van Etten JL, Gebhardt M, Villarreal LP, Cosentino C, Moroni A, Thiel G. Phycodnavirus potassium ion channel proteins question the virus molecular piracy hypothesis. Phycodnavirus potassium ion channel proteins question the virus molecular piracy hypothesis. PLoS One, 7, e38826-e38826 , 7, e38826-e38826 PLoS One, 7, e38826-e38826 2012 Refereed English Research paper(scientific journal) Disclose to all
Pagarete A, Le Corguille G, Tiwari B, Ogata H, de Vargas C, Wilson WH, Allen MJ. Pagarete A, Le Corguille G, Tiwari B, Ogata H, de Vargas C, Wilson WH, Allen MJ. Unveiling the transcriptional features associated with coccolithovirus infection of natural Emiliania huxleyi blooms. Unveiling the transcriptional features associated with coccolithovirus infection of natural Emiliania huxleyi blooms. FEMS Microbiol Ecol, 78, 555-564 , 78, 555-564 FEMS Microbiol Ecol, 78, 555-564 2011/12 Refereed English Research paper(scientific journal) Disclose to all
Nissimov JI, Worthy CA, Rooks P, Napier JA, Kimmance SA, Henn MR, Ogata H, Allen MJ. Nissimov JI, Worthy CA, Rooks P, Napier JA, Kimmance SA, Henn MR, Ogata H, Allen MJ. Draft genome sequence of the Coccolithovirus Emiliania huxleyi virus 203. Draft genome sequence of the Coccolithovirus Emiliania huxleyi virus 203. J Virol, 85, 13468-13469 , 85, 13468-13469 J Virol, 85, 13468-13469 2011/12 Refereed English Research paper(scientific journal) Disclose to all
Nissimov JI, Worthy CA, Rooks P, Napier JA, Kimmance SA, Henn MR, Ogata H, Allen MJ. Nissimov JI, Worthy CA, Rooks P, Napier JA, Kimmance SA, Henn MR, Ogata H, Allen MJ. Draft genome sequence of the coccolithovirus EhV-84. Draft genome sequence of the coccolithovirus EhV-84. Stand Genomic Sci, 5, 1-11 , 5, 1-11 Stand Genomic Sci, 5, 1-11 2011/10 Refereed English Research paper(scientific journal) Disclose to all
Karsenti E, Acinas SG, Bork P, Bowler C, De Vargas C, Raes J, Sullivan M, Arendt D, Benzoni F, Claverie JM, Follows M, Gorsky G, Hingamp P, Iudicone D, Jaillon O, Kandels-Lewis S, Krzic U, Not F, Ogata H, Pesant S, Reynaud EG, Sardet C, Sieracki ME, Speich S, Velayoudon D, Weissenbach J, Wincker P. Karsenti E, Acinas SG, Bork P, Bowler C, De Vargas C, Raes J, Sullivan M, Arendt D, Benzoni F, Claverie JM, Follows M, Gorsky G, Hingamp P, Iudicone D, Jaillon O, Kandels-Lewis S, Krzic U, Not F, Ogata H, Pesant S, Reynaud EG, Sardet C, Sieracki ME, Speich S, Velayoudon D, Weissenbach J, Wincker P. A holistic approach to marine eco-systems biology. A holistic approach to marine eco-systems biology. PLoS Biol, 9, e1001177-e1001177 , 9, e1001177-e1001177 PLoS Biol, 9, e1001177-e1001177 2011/10 Refereed English Research paper(scientific journal) Disclose to all
Yoshida T, Claverie JM, Ogata H. Yoshida T, Claverie JM, Ogata H. Mimivirus reveals Mre11/Rad50 fusion proteins with a sporadic distribution in eukaryotes, bacteria, viruses and plasmids. Mimivirus reveals Mre11/Rad50 fusion proteins with a sporadic distribution in eukaryotes, bacteria, viruses and plasmids. Virol J, 8, 427-427 , 8, 427-427 Virol J, 8, 427-427 2011/09 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Ray J, Toyoda K, Sandaa RA, Nagasaki K, Bratbak G, Claverie JM. Ogata H, Ray J, Toyoda K, Sandaa RA, Nagasaki K, Bratbak G, Claverie JM. Two new subfamilies of DNA mismatch repair proteins (MutS) specifically abundant in the marine environment. Two new subfamilies of DNA mismatch repair proteins (MutS) specifically abundant in the marine environment. ISME J, 5, 1143-1151 , 5, 1143-1151 ISME J, 5, 1143-1151 2011/07 Refereed English Research paper(scientific journal) Disclose to all
Yamada T, Satoh S, Ishikawa H, Fujiwara A, Kawasaki T, Fujie M, Ogata H. Yamada T, Satoh S, Ishikawa H, Fujiwara A, Kawasaki T, Fujie M, Ogata H. A jumbo phage infecting the phytopathogen Ralstonia solanacearum defines a new lineage of the Myoviridae family. A jumbo phage infecting the phytopathogen Ralstonia solanacearum defines a new lineage of the Myoviridae family. Virology, 398, 135-147 , 398, 135-147 Virology, 398, 135-147 2010/03 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Monier A, Claverie J.-M. Ogata H, Monier A, Claverie J.-M. Distribution of Giant Viruses in Marine Environments. Distribution of Giant Viruses in Marine Environments. Global Change: Mankind-Marine Environment Interactions Global Change: Mankind-Marine Environment Interactions 2010 English Disclose to all
Abdelkafi S, Ogata H, Barouh N, Fouquet B, Lebrun R, Pina M, Scheirlinckx F, Villeneuve P, Carriere F. Abdelkafi S, Ogata H, Barouh N, Fouquet B, Lebrun R, Pina M, Scheirlinckx F, Villeneuve P, Carriere F. Identification and biochemical characterization of a GDSL-motif carboxylester hydrolase from Carica papaya latex. Identification and biochemical characterization of a GDSL-motif carboxylester hydrolase from Carica papaya latex. Biochim Biophys Acta, 1791, 1048-1056 , 1791, 1048-1056 Biochim Biophys Acta, 1791, 1048-1056 2009/11 Refereed English Research paper(scientific journal) Disclose to all
von Dassow P, Ogata H, Probert I, Wincker P, Da Silva C, Audic S, Claverie JM, de Vargas C. von Dassow P, Ogata H, Probert I, Wincker P, Da Silva C, Audic S, Claverie JM, de Vargas C. Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell. Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell. Genome Biol, 10, R114-R114 , 10, R114-R114 Genome Biol, 10, R114-R114 2009/10 Refereed English Research paper(scientific journal) Disclose to all
Monier A, Pagarete A, de Vargas C, Allen MJ, Read B, Claverie JM, Ogata H. Monier A, Pagarete A, de Vargas C, Allen MJ, Read B, Claverie JM, Ogata H. Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus. Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus. Genome Res, 19, 1441-1449 , 19, 1441-1449 Genome Res, 19, 1441-1449 2009/08 Refereed English Research paper(scientific journal) Disclose to all
Claverie JM, Ogata H. Claverie JM, Ogata H. Ten good reasons not to exclude giruses from the evolutionary picture. Ten good reasons not to exclude giruses from the evolutionary picture. Nat Rev Microbiol, 7, 615-615 , 7, 615-615 Nat Rev Microbiol, 7, 615-615 2009/08 Refereed English Research paper(scientific journal) Disclose to all
Claverie JM, Grzela R, Lartigue A, Bernadac A, Nitsche S, Vacelet J, Ogata H, Abergel C. Claverie JM, Grzela R, Lartigue A, Bernadac A, Nitsche S, Vacelet J, Ogata H, Abergel C. Mimivirus and Mimiviridae: giant viruses with an increasing number of potential hosts, including corals and sponges. Mimivirus and Mimiviridae: giant viruses with an increasing number of potential hosts, including corals and sponges. J Invertebr Pathol, 101, 172-180 , 101, 172-180 J Invertebr Pathol, 101, 172-180 2009/07 Refereed English Research paper(scientific journal) Disclose to all
Claverie J.-M, Abergel C, Ogata H. Claverie J.-M, Abergel C, Ogata H. Mimivirus. Mimivirus. Lesser Known Large dsDNA Viruses Lesser Known Large dsDNA Viruses 2009 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Toyoda K, Tomaru Y, Nakayama N, Shirai Y, Claverie JM, Nagasaki K. Ogata H, Toyoda K, Tomaru Y, Nakayama N, Shirai Y, Claverie JM, Nagasaki K. Remarkable sequence similarity between the dinoflagellate-infecting marine girus and the terrestrial pathogen African swine fever virus. Remarkable sequence similarity between the dinoflagellate-infecting marine girus and the terrestrial pathogen African swine fever virus. Virol J, 6, 178-178 , 6, 178-178 Virol J, 6, 178-178 2009 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Claverie JM. Ogata H, Claverie JM. How to infect a Mimivirus. How to infect a Mimivirus. Science, 321, 1305-1306 , 321, 1305-1306 Science, 321, 1305-1306 2008/09 Refereed English Research paper(scientific journal) Disclose to all
Yoshida T, Nagasaki K, Takashima Y, Shirai Y, Tomaru Y, Takao Y, Sakamoto S, Hiroishi S, Ogata H. Yoshida T, Nagasaki K, Takashima Y, Shirai Y, Tomaru Y, Takao Y, Sakamoto S, Hiroishi S, Ogata H. Ma-LMM01 infecting toxic Microcystis aeruginosa illuminates diverse cyanophage genome strategies. Ma-LMM01 infecting toxic Microcystis aeruginosa illuminates diverse cyanophage genome strategies. J Bacteriol, 190, 1762-1772 , 190, 1762-1772 J Bacteriol, 190, 1762-1772 2008/03 Refereed English Research paper(scientific journal) Disclose to all
Monier A, Larsen JB, Sandaa RA, Bratbak G, Claverie JM, Ogata H. Monier A, Larsen JB, Sandaa RA, Bratbak G, Claverie JM, Ogata H. Marine mimivirus relatives are probably large algal viruses. Marine mimivirus relatives are probably large algal viruses. Virol J, 5, 12-12 , 5, 12-12 Virol J, 5, 12-12 2008/01 Refereed English Research paper(scientific journal) Disclose to all
Monier A, Claverie JM, Ogata H. Monier A, Claverie JM, Ogata H. Taxonomic distribution of large DNA viruses in the sea. Taxonomic distribution of large DNA viruses in the sea. Genome Biol, 9, R106-R106 , 9, R106-R106 Genome Biol, 9, R106-R106 2008 Refereed English Research paper(scientific journal) Disclose to all
Monier A, Claverie JM, Ogata H. Monier A, Claverie JM, Ogata H. Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses. Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses. BMC Genomics, 8, 456-456 , 8, 456-456 BMC Genomics, 8, 456-456 2007/12 Refereed English Research paper(scientific journal) Disclose to all
Blanc G, Ogata H, Robert C, Audic S, Claverie JM, Raoult D. Blanc G, Ogata H, Robert C, Audic S, Claverie JM, Raoult D. Lateral gene transfer between obligate intracellular bacteria: evidence from the Rickettsia massiliae genome. Lateral gene transfer between obligate intracellular bacteria: evidence from the Rickettsia massiliae genome. Genome Res, 17, 1657-1664 , 17, 1657-1664 Genome Res, 17, 1657-1664 2007/11 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Claverie JM. Ogata H, Claverie JM. Unique genes in giant viruses: regular substitution pattern and anomalously short size. Unique genes in giant viruses: regular substitution pattern and anomalously short size. Genome Res, 17, 1353-1361 , 17, 1353-1361 Genome Res, 17, 1353-1361 2007/09 Refereed English Research paper(scientific journal) Disclose to all
Blanc G, Ogata H, Robert C, Audic S, Suhre K, Vestris G, Claverie JM, Raoult D. Blanc G, Ogata H, Robert C, Audic S, Suhre K, Vestris G, Claverie JM, Raoult D. Reductive genome evolution from the mother of Rickettsia. Reductive genome evolution from the mother of Rickettsia. PLoS Genet, 3, e14-e14 , 3, e14-e14 PLoS Genet, 3, e14-e14 2007/01 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Claverie J.-M. Ogata H, Claverie J.-M. An essential dichotomy of the gene pool of giant DNA viruses. An essential dichotomy of the gene pool of giant DNA viruses. JOBIM 2007, 269-270 , 269-270 JOBIM 2007, 269-270 2007 Refereed English Research paper(international conference proceedings) Disclose to all
Monier A, Claverie J.-M, Ogata H. Monier A, Claverie J.-M, Ogata H. Horizontal gene transfer and large DNA viruses. Horizontal gene transfer and large DNA viruses. JOBIM 2007, 271-273 , 271-273 JOBIM 2007, 271-273 2007 Refereed English Research paper(international conference proceedings) Disclose to all
Ogata H, Renesto P. Ogata H, Renesto P. Genomics of Rickettsial Agents. Genomics of Rickettsial Agents. Rickettsial Diseases: Old and New Rickettsial Diseases: Old and New 2007 Refereed English Disclose to all
Renesto P, Abergel C, Decloquement P, Moinier D, Azza S, Ogata H, Fourquet P, Gorvel JP, Claverie JM. Renesto P, Abergel C, Decloquement P, Moinier D, Azza S, Ogata H, Fourquet P, Gorvel JP, Claverie JM. Mimivirus giant particles incorporate a large fraction of anonymous and unique gene products. Mimivirus giant particles incorporate a large fraction of anonymous and unique gene products. J Virol, 80, 11678-11685 , 80, 11678-11685 J Virol, 80, 11678-11685 2006/12 Refereed English Research paper(scientific journal) Disclose to all
Abergel C, Blanc G, Monchois V, Renesto P, Sigoillot C, Ogata H, Raoult D, Claverie JM. Abergel C, Blanc G, Monchois V, Renesto P, Sigoillot C, Ogata H, Raoult D, Claverie JM. Impact of the excision of an ancient repeat insertion on Rickettsia conorii guanylate kinase activity. Impact of the excision of an ancient repeat insertion on Rickettsia conorii guanylate kinase activity. Mol Biol Evol, 23, 2112-2122 , 23, 2112-2122 Mol Biol Evol, 23, 2112-2122 2006/11 Refereed English Research paper(scientific journal) Disclose to all
Renesto P, Samson L, Ogata H, Azza S, Fourquet P, Gorvel JP, Heinzen RA, Raoult D. Renesto P, Samson L, Ogata H, Azza S, Fourquet P, Gorvel JP, Heinzen RA, Raoult D. Identification of two putative rickettsial adhesins by proteomic analysis. Identification of two putative rickettsial adhesins by proteomic analysis. Res Microbiol, 157, 605-612 , 157, 605-612 Res Microbiol, 157, 605-612 2006/09 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, La Scola B, Audic S, Renesto P, Blanc G, Robert C, Fournier PE, Claverie JM, Raoult D. Ogata H, La Scola B, Audic S, Renesto P, Blanc G, Robert C, Fournier PE, Claverie JM, Raoult D. Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens. Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens. PLoS Genet, 2, e76-e76 , 2, e76-e76 PLoS Genet, 2, e76-e76 2006/05 Refereed English Research paper(scientific journal) Disclose to all
Claverie JM, Ogata H, Audic S, Abergel C, Suhre K, Fournier PE. Claverie JM, Ogata H, Audic S, Abergel C, Suhre K, Fournier PE. Mimivirus and the emerging concept of "giant" virus. Mimivirus and the emerging concept of "giant" virus. Virus Res, 117, 133-144 , 117, 133-144 Virus Res, 117, 133-144 2006/04 Refereed English Research paper(scientific journal) Disclose to all
Fournier PE, Vallenet D, Barbe V, Audic S, Ogata H, Poirel L, Richet H, Robert C, Mangenot S, Abergel C, Nordmann P, Weissenbach J, Raoult D, Claverie JM. Fournier PE, Vallenet D, Barbe V, Audic S, Ogata H, Poirel L, Richet H, Robert C, Mangenot S, Abergel C, Nordmann P, Weissenbach J, Raoult D, Claverie JM. Comparative genomics of multidrug resistance in Acinetobacter baumannii. Comparative genomics of multidrug resistance in Acinetobacter baumannii. PLoS Genet, 2, e7-e7 , 2, e7-e7 PLoS Genet, 2, e7-e7 2006/01 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Raoult D. Ogata H, Raoult D. Genomics of Rickettsia. Genomics of Rickettsia. Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics 2006 Refereed English Disclose to all
Ogata H, Robert C, Audic S, Robineau S, Blanc G, Fournier PE, Renesto P, Claverie JM, Raoult D. Ogata H, Robert C, Audic S, Robineau S, Blanc G, Fournier PE, Renesto P, Claverie JM, Raoult D. Rickettsia felis, from culture to genome sequencing. Rickettsia felis, from culture to genome sequencing. Ann N Y Acad Sci, 1063, 26-34 , 1063, 26-34 Ann N Y Acad Sci, 1063, 26-34 2005/12 Refereed English Research paper(scientific journal) Disclose to all
Ngwamidiba M, Blanc G, Ogata H, Raoult D, Fournier PE. Ngwamidiba M, Blanc G, Ogata H, Raoult D, Fournier PE. Phylogenetic study of Rickettsia species using sequences of the autotransporter protein-encoding gene sca2. Phylogenetic study of Rickettsia species using sequences of the autotransporter protein-encoding gene sca2. Ann N Y Acad Sci, 1063, 94-99 , 1063, 94-99 Ann N Y Acad Sci, 1063, 94-99 2005/12 Refereed English Research paper(scientific journal) Disclose to all
Blanc G, Ngwamidiba M, Ogata H, Fournier PE, Claverie JM, Raoult D. Blanc G, Ngwamidiba M, Ogata H, Fournier PE, Claverie JM, Raoult D. Molecular evolution of rickettsia surface antigens: evidence of positive selection. Molecular evolution of rickettsia surface antigens: evidence of positive selection. Mol Biol Evol, 22, 2073-2083 , 22, 2073-2083 Mol Biol Evol, 22, 2073-2083 2005/10 Refereed English Research paper(scientific journal) Disclose to all
Zhu Y, Fournier PE, Ogata H, Raoult D. Zhu Y, Fournier PE, Ogata H, Raoult D. Multispacer typing of Rickettsia prowazekii enabling epidemiological studies of epidemic typhus. Multispacer typing of Rickettsia prowazekii enabling epidemiological studies of epidemic typhus. J Clin Microbiol, 43, 4708-4712 , 43, 4708-4712 J Clin Microbiol, 43, 4708-4712 2005/09 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Renesto P, Audic S, Robert C, Blanc G, Fournier PE, Parinello H, Claverie JM, Raoult D. Ogata H, Renesto P, Audic S, Robert C, Blanc G, Fournier PE, Parinello H, Claverie JM, Raoult D. The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite. The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite. PLoS Biol, 3, e248-e248 , 3, e248-e248 PLoS Biol, 3, e248-e248 2005/08 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Suhre K, Claverie JM. Ogata H, Suhre K, Claverie JM. Discovery of protein-coding palindromic repeats in Wolbachia. Discovery of protein-coding palindromic repeats in Wolbachia. Trends Microbiol, 13, 253-255 , 13, 253-255 Trends Microbiol, 13, 253-255 2005/06 Refereed English Research paper(scientific journal) Disclose to all
Rovery C, Renesto P, Crapoulet N, Matsumoto K, Parola P, Ogata H, Raoult D. Rovery C, Renesto P, Crapoulet N, Matsumoto K, Parola P, Ogata H, Raoult D. Transcriptional response of Rickettsia conorii exposed to temperature variation and stress starvation. Transcriptional response of Rickettsia conorii exposed to temperature variation and stress starvation. Res Microbiol, 156, 211-218 , 156, 211-218 Res Microbiol, 156, 211-218 2005/03 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Raoult D, Claverie JM. Ogata H, Raoult D, Claverie JM. A new example of viral intein in Mimivirus. A new example of viral intein in Mimivirus. Virol J, 2, 8-8 , 2, 8-8 Virol J, 2, 8-8 2005/02 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Claverie JM. Ogata H, Claverie JM. Metagrowth: a new resource for the building of metabolic hypotheses in microbiology. Metagrowth: a new resource for the building of metabolic hypotheses in microbiology. Nucleic Acids Res, 33, D321-D324 , 33, D321-D324 Nucleic Acids Res, 33, D321-D324 2005/01 Refereed English Research paper(scientific journal) Disclose to all
Renesto P, Ogata H, Audic S, Claverie JM, Raoult D. Renesto P, Ogata H, Audic S, Claverie JM, Raoult D. Some lessons from Rickettsia genomics. Some lessons from Rickettsia genomics. FEMS Microbiol Rev, 29, 99-117 , 29, 99-117 FEMS Microbiol Rev, 29, 99-117 2005/01 Refereed English Research paper(scientific journal) Disclose to all
Crapoulet N, Renesto P, Dumler J. S, Suhre K, Ogata H, Claverie J-M, Raoult D. Crapoulet N, Renesto P, Dumler J. S, Suhre K, Ogata H, Claverie J-M, Raoult D. Tropheryma whipplei genome at the beginning of the post-genomic era. Tropheryma whipplei genome at the beginning of the post-genomic era. Current Genomics, 6, 195-205 , 6, 195-205 Current Genomics, 6, 195-205 2005 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Abergel C, Raoult D, Claverie J.-M. Ogata H, Abergel C, Raoult D, Claverie J.-M. Response to comment on "the 1.2-megabase genome sequence of Mimivirus." Response to comment on "the 1.2-megabase genome sequence of Mimivirus." Science, 38, 1114b-1114b , 38, 1114b-1114b Science, 38, 1114b-1114b 2005 Refereed English Research paper(scientific journal) Disclose to all
Fournier PE, Zhu Y, Ogata H, Raoult D. Fournier PE, Zhu Y, Ogata H, Raoult D. Use of highly variable intergenic spacer sequences for multispacer typing of Rickettsia conorii strains. Use of highly variable intergenic spacer sequences for multispacer typing of Rickettsia conorii strains. J Clin Microbiol, 42, 5757-5766 , 42, 5757-5766 J Clin Microbiol, 42, 5757-5766 2004/12 Refereed English Research paper(scientific journal) Disclose to all
Raoult D, Audic S, Robert C, Abergel C, Renesto P, Ogata H, La Scola B, Suzan M, Claverie JM. Raoult D, Audic S, Robert C, Abergel C, Renesto P, Ogata H, La Scola B, Suzan M, Claverie JM. The 1.2-megabase genome sequence of Mimivirus. The 1.2-megabase genome sequence of Mimivirus. Science, 306, 1344-1350 , 306, 1344-1350 Science, 306, 1344-1350 2004/11 Refereed English Research paper(scientific journal) Disclose to all
Drancourt M, Roux V, Dang LV, Tran-Hung L, Castex D, Chenal-Francisque V, Ogata H, Fournier PE, Crubezy E, Raoult D. Drancourt M, Roux V, Dang LV, Tran-Hung L, Castex D, Chenal-Francisque V, Ogata H, Fournier PE, Crubezy E, Raoult D. Genotyping, Orientalis-like Yersinia pestis, and plague pandemics. Genotyping, Orientalis-like Yersinia pestis, and plague pandemics. Emerg Infect Dis, 10, 1585-1592 , 10, 1585-1592 Emerg Infect Dis, 10, 1585-1592 2004/09 Refereed English Research paper(scientific journal) Disclose to all
Scorpio DG, Caspersen K, Ogata H, Park J, Dumler JS. Scorpio DG, Caspersen K, Ogata H, Park J, Dumler JS. Restricted changes in major surface protein-2 (msp2) transcription after prolonged in vitro passage of Anaplasma phagocytophilum. Restricted changes in major surface protein-2 (msp2) transcription after prolonged in vitro passage of Anaplasma phagocytophilum. BMC Microbiol, 4, 1-1 , 4, 1-1 BMC Microbiol, 4, 1-1 2004/01 Refereed English Research paper(scientific journal) Disclose to all
Renesto P, Crapoulet N, Ogata H, La Scola B, Vestris G, Claverie JM, Raoult D. Renesto P, Crapoulet N, Ogata H, La Scola B, Vestris G, Claverie JM, Raoult D. Genome-based design of a cell-free culture medium for Tropheryma whipplei. Genome-based design of a cell-free culture medium for Tropheryma whipplei. Lancet, 362, 447-449 , 362, 447-449 Lancet, 362, 447-449 2003/08 Refereed English Research paper(scientific journal) Disclose to all
Raoult D, Ogata H, Audic S, Robert C, Suhre K, Drancourt M, Claverie JM. Raoult D, Ogata H, Audic S, Robert C, Suhre K, Drancourt M, Claverie JM. Tropheryma whipplei Twist: a human pathogenic Actinobacteria with a reduced genome. Tropheryma whipplei Twist: a human pathogenic Actinobacteria with a reduced genome. Genome Res, 13, 1800-1809 , 13, 1800-1809 Genome Res, 13, 1800-1809 2003/08 Refereed English Research paper(scientific journal) Disclose to all
Claverie JM, Ogata H. Claverie JM, Ogata H. The insertion of palindromic repeats in the evolution of proteins. The insertion of palindromic repeats in the evolution of proteins. Trends Biochem Sci, 28, 75-80 , 28, 75-80 Trends Biochem Sci, 28, 75-80 2003/02 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Audic S, Abergel C, Fournier PE, Claverie JM. Ogata H, Audic S, Abergel C, Fournier PE, Claverie JM. Protein coding palindromes are a unique but recurrent feature in Rickettsia. Protein coding palindromes are a unique but recurrent feature in Rickettsia. Genome Res, 12, 808-816 , 12, 808-816 Genome Res, 12, 808-816 2002/05 Refereed English Research paper(scientific journal) Disclose to all
Zeaiter Z, Fournier PE, Ogata H, Raoult D. Zeaiter Z, Fournier PE, Ogata H, Raoult D. Phylogenetic classification of Bartonella species by comparing groEL sequences. Phylogenetic classification of Bartonella species by comparing groEL sequences. Int J Syst Evol Microbiol, 52, 165-171 , 52, 165-171 Int J Syst Evol Microbiol, 52, 165-171 2002/01 Refereed English Research paper(scientific journal) Disclose to all
Claverie JM, Abergel C, Audic S, Ogata H. Claverie JM, Abergel C, Audic S, Ogata H. Recent advances in computational genomics. Recent advances in computational genomics. Pharmacogenomics, 2, 361-372 , 2, 361-372 Pharmacogenomics, 2, 361-372 2001/11 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Audic S, Renesto-Audiffren P, Fournier PE, Barbe V, Samson D, Roux V, Cossart P, Weissenbach J, Claverie JM, Raoult D. Ogata H, Audic S, Renesto-Audiffren P, Fournier PE, Barbe V, Samson D, Roux V, Cossart P, Weissenbach J, Claverie JM, Raoult D. Mechanisms of evolution in Rickettsia conorii and R. prowazekii. Mechanisms of evolution in Rickettsia conorii and R. prowazekii. Science, 293, 2093-2098 , 293, 2093-2098 Science, 293, 2093-2098 2001/09 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Audic S, Claverie J.-M. Ogata H, Audic S, Claverie J.-M. Selfish DNA and the origin of genes. Selfish DNA and the origin of genes. Science, 291, 252-253 , 291, 252-253 Science, 291, 252-253 2001 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Fujibuchi W, Goto S, Kanehisa M. Ogata H, Fujibuchi W, Goto S, Kanehisa M. A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters. A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters. Nucleic Acids Res, 28, 4021-4028 , 28, 4021-4028 Nucleic Acids Res, 28, 4021-4028 2000/10 Refereed English Research paper(scientific journal) Disclose to all
Fujibuchi W, Ogata H, Matsuda H, Kanehisa M. Fujibuchi W, Ogata H, Matsuda H, Kanehisa M. Automatic detection of conserved gene clusters in multiple genomes by graph comparison and P-quasi grouping. Automatic detection of conserved gene clusters in multiple genomes by graph comparison and P-quasi grouping. Nucleic Acids Res, 28, 4029-4036 , 28, 4029-4036 Nucleic Acids Res, 28, 4029-4036 2000/10 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Audic S, Barbe V, Artiguenave F, Fournier PE, Raoult D, Claverie JM. Ogata H, Audic S, Barbe V, Artiguenave F, Fournier PE, Raoult D, Claverie JM. Selfish DNA in protein-coding genes of Rickettsia. Selfish DNA in protein-coding genes of Rickettsia. Science, 290, 347-350 , 290, 347-350 Science, 290, 347-350 2000/10 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Goto S, Sato K, Fujibuchi W, Bono H, Kanehisa M. Ogata H, Goto S, Sato K, Fujibuchi W, Bono H, Kanehisa M. KEGG: Kyoto Encyclopedia of Genes and Genomes. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res, 27, 29-34 , 27, 29-34 Nucleic Acids Res, 27, 29-34 1999/01 Refereed English Research paper(scientific journal) Disclose to all
Kawashima S, Ogata H, Kanehisa M. Kawashima S, Ogata H, Kanehisa M. AAindex: Amino Acid Index Database. AAindex: Amino Acid Index Database. Nucleic Acids Res, 27, 368-369 , 27, 368-369 Nucleic Acids Res, 27, 368-369 1999/01 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Goto S, Fujibuchi W, Kanehisa M. Ogata H, Goto S, Fujibuchi W, Kanehisa M. Computation with the KEGG pathway database. Computation with the KEGG pathway database. Biosystems, 47, 119-128 , 47, 119-128 Biosystems, 47, 119-128 1998/06 Refereed English Research paper(scientific journal) Disclose to all
Bono H, Ogata H, Goto S, Kanehisa M. Bono H, Ogata H, Goto S, Kanehisa M. Reconstruction of amino acid biosynthesis pathways from the complete genome sequence. Reconstruction of amino acid biosynthesis pathways from the complete genome sequence. Genome Res, 8, 203-210 , 8, 203-210 Genome Res, 8, 203-210 1998/03 Refereed English Research paper(scientific journal) Disclose to all
Bono H, Goto S, Fujibuchi W, Ogata H, Kanehisa M. Bono H, Goto S, Fujibuchi W, Ogata H, Kanehisa M. Systematic Prediction of Orthologous Units of Genes in the Complete Genomes. Systematic Prediction of Orthologous Units of Genes in the Complete Genomes. Genome Inform Ser Workshop Genome Inform, 9, 32-40 , 9, 32-40 Genome Inform Ser Workshop Genome Inform, 9, 32-40 1998 Refereed English Research paper(scientific journal) Disclose to all
Fujibuchi W, Kazushige S, Ogata H, Goto S, Kanehisa M. Fujibuchi W, Kazushige S, Ogata H, Goto S, Kanehisa M. KEGG and DBGET/LinkDB: Integration of biological relationships in divergent molecular biology data. KEGG and DBGET/LinkDB: Integration of biological relationships in divergent molecular biology data. Knowledge Sharing Across Biological and Medical Knowledge Based Systems, Technical Report WS-98-04, 35-40 , Technical Report WS-98-04, 35-40 Knowledge Sharing Across Biological and Medical Knowledge Based Systems, Technical Report WS-98-04, 35-40 1998 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Kanehisa M. Ogata H, Kanehisa M. A Survey on E. coli Enzymes: Correlation between Metabolic Pathway and Gene Location. A Survey on E. coli Enzymes: Correlation between Metabolic Pathway and Gene Location. ICR Annual Report 1996, 52-53 , 52-53 ICR Annual Report 1996, 52-53 1997 Refereed English Research paper(bulletin of university, research institution) Disclose to all
Goto S, Bono H, Ogata H, Fujibuchi W, Nishioka T, Sato K, Kanehisa M. Goto S, Bono H, Ogata H, Fujibuchi W, Nishioka T, Sato K, Kanehisa M. Organizing and computing metabolic pathway data in terms of binary relations. Organizing and computing metabolic pathway data in terms of binary relations. Pac Symp Biocomput, 175-186 , 175-186 Pac Symp Biocomput, 175-186 1997 Refereed English Research paper(international conference proceedings) Disclose to all
Ogata H, Fujibuchi W, Kanehisa M. Ogata H, Fujibuchi W, Kanehisa M. The size differences among mammalian introns are due to the accumulation of small deletions. The size differences among mammalian introns are due to the accumulation of small deletions. FEBS Lett, 390, 99-103 , 390, 99-103 FEBS Lett, 390, 99-103 1996/07 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Bono H, Fujibuchi W, Goto S, Kanehisa M. Ogata H, Bono H, Fujibuchi W, Goto S, Kanehisa M. Analysis of binary relations and hierarchies of enzymes in the metabolic pathways. Analysis of binary relations and hierarchies of enzymes in the metabolic pathways. Genome Informatics, 7, 128-136 , 7, 128-136 Genome Informatics, 7, 128-136 1996 Refereed English Research paper(international conference proceedings) Disclose to all
Ogata H, Akiyama Y, Kanehisa M. Ogata H, Akiyama Y, Kanehisa M. A genetic algorithm based molecular modeling technique for RNA stem-loop structures. A genetic algorithm based molecular modeling technique for RNA stem-loop structures. Nucleic Acids Res, 23, 419-426 , 23, 419-426 Nucleic Acids Res, 23, 419-426 1995/02 Refereed English Research paper(scientific journal) Disclose to all
Ogata H, Akiyama Y, Kanehisa M. Ogata H, Akiyama Y, Kanehisa M. A computer modeling method for three-dimensional structure of RNA. A computer modeling method for three-dimensional structure of RNA. Genome Informatics, 4, 270-274 , 4, 270-274 Genome Informatics, 4, 270-274 1993 Refereed English Research paper(international conference proceedings) Disclose to all

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Conference Activities & Talks
Title Title(Japanese) Title(English) Conference Conference(Japanese) Conference(English) Promotor Promotor(Japanese) Promotor(English) Date Language Assortment Disclose
Eukaryotic giant viruses: update on their evolution, diversity and ecology. Eukaryotic giant viruses: update on their evolution, diversity and ecology. Eukaryotic giant viruses: update on their evolution, diversity and ecology. ELSI Thermophiles seminar ELSI Thermophiles seminar ELSI Thermophiles seminar 2019/08/30 Disclose to all
Prediction of viruses enhancing the biological carbon pump. Prediction of viruses enhancing the biological carbon pump. Prediction of viruses enhancing the biological carbon pump. Neo-Virology Informatics Workshop Neo-Virology Informatics Workshop Neo-Virology Informatics Workshop 2019/08/29 Oral presentation(general) Disclose to all
Do viruses enhance the carbon export down to the deep ocean? Do viruses enhance the carbon export down to the deep ocean? Do viruses enhance the carbon export down to the deep ocean? Gordon Research Conference Gordon Research Conference Gordon Research Conference 2019/07/15 English Oral presentation(general) Disclose to all
地球規模海洋オミクスデータに基づく巨大ウイルスと生物炭素ポンプの関係の解明[Invited] 地球規模海洋オミクスデータに基づく巨大ウイルスと生物炭素ポンプの関係の解明 [Invited] 地球規模海洋オミクスデータに基づく巨大ウイルスと生物炭素ポンプの関係の解明 [Invited] 第2回感染症診断と治療におけるゲノム解析 第2回感染症診断と治療におけるゲノム解析 第2回感染症診断と治療におけるゲノム解析 2019/03/15 Japanese Oral presentation(invited, special) Disclose to all
A giant virus from a freshwater environment with a full set of histone genes A giant virus from a freshwater environment with a full set of histone genes A giant virus from a freshwater environment with a full set of histone genes 9th Aquatic Virus Workshop 9th Aquatic Virus Workshop 9th Aquatic Virus Workshop 2018/06/17 English Oral presentation(general) Disclose to all
どこから来て、何をしているのか?[Invited] どこから来て、何をしているのか? [Invited] 第33回国際生物学賞記念シンポジウム 第33回国際生物学賞記念シンポジウム 2017/12 Disclose to all
Diversity and biogeography of marine giruses and their association with the biological carbon pump Diversity and biogeography of marine giruses and their association with the biological carbon pump Diversity and biogeography of marine giruses and their association with the biological carbon pump The 3rd Ringberg Symposium on Giant Virus Biology The 3rd Ringberg Symposium on Giant Virus Biology The 3rd Ringberg Symposium on Giant Virus Biology 2017/11/21 English Oral presentation(general) Disclose to all
何故に今頃ネオウィルス学?[Invited] 何故に今頃ネオウィルス学? [Invited] 環境微生物系学会合同大会 環境微生物系学会合同大会 2017/08 Disclose to all
マルチオミクス解析が明らかにする洋ウイルスの多様性と存在意義[Invited] マルチオミクス解析が明らかにする洋ウイルスの多様性と存在意義 [Invited] マルチオミクス解析が明らかにする洋ウイルスの多様性と存在意義 [Invited] 日本進化学会第19回大会 日本進化学会第19回大会 2017/08 Disclose to all
Towards unveiling pivotal roles of viruses in marine ecosystems[Invited] Towards unveiling pivotal roles of viruses in marine ecosystems [Invited] Towards unveiling pivotal roles of viruses in marine ecosystems [Invited] The 73rd Fujihara Seminar, International Conference "Molecular Life of Diatoms" The 73rd Fujihara Seminar, International Conference "Molecular Life of Diatoms" The 73rd Fujihara Seminar, International Conference "Molecular Life of Diatoms" 2017/07/13 Disclose to all
遺伝子科学の昨今、生物学からのアプローチ[Invited] 遺伝子科学の昨今、生物学からのアプローチ [Invited] 遺伝子科学の昨今、生物学からのアプローチ [Invited] 2016年度日仏会館科学シンポジウム 2016年度日仏会館科学シンポジウム 2016年度日仏会館科学シンポジウム 2016/12/03 Japanese Oral presentation(invited, special) Disclose to all
Extreme diversity, high abundance and activities of giant viruses in the sea. Extreme diversity, high abundance and activities of giant viruses in the sea. Extreme diversity, high abundance and activities of giant viruses in the sea. The 39th Annual Meeting of the Molecular Biology Society of Japan The 39th Annual Meeting of the Molecular Biology Society of Japan The 39th Annual Meeting of the Molecular Biology Society of Japan 2016/12/02 English Oral presentation(general) Disclose to all
アメーバウイルス研究がもたらしたンパクト アメーバウイルス研究がもたらしたンパクト アメーバウイルス研究がもたらしたンパクト 日本微生物生態学会年会 日本微生物生態学会年会 日本微生物生態学会年会 2016/10/24 Japanese Oral presentation(general) Disclose to all
versity of the Bacteroidetes viruses through analysis of 48 new genera versity of the Bacteroidetes viruses through analysis of 48 new genera versity of the Bacteroidetes viruses through analysis of 48 new genera ファージ・環境ウイルス研究会合同シンポジウム ファージ・環境ウイルス研究会合同シンポジウム ファージ・環境ウイルス研究会合同シンポジウム 2016/10/22 Japanese Oral presentation(general) Disclose to all
環境ウイルスゲノムの自動分類法 環境ウイルスゲノムの自動分類法 環境ウイルスゲノムの自動分類法 ファージ・環境ウイルス研究会合同シンポジウム ファージ・環境ウイルス研究会合同シンポジウム ファージ・環境ウイルス研究会合同シンポジウム 2016/10/22 Japanese Oral presentation(general) Disclose to all
多数のtRNAをコードする大型ファージXacN1のゲノム解析 多数のtRNAをコードする大型ファージXacN1のゲノム解析 多数のtRNAをコードする大型ファージXacN1のゲノム解析 ファージ・環境ウイルス研究会合同シンポジウム ファージ・環境ウイルス研究会合同シンポジウム ファージ・環境ウイルス研究会合同シンポジウム 2016/10/21 Japanese Poster presentation Disclose to all
Pan-ocean meta-transcriptomic analysis of nucleo-cytoplasmic large DNA viruses Pan-ocean meta-transcriptomic analysis of nucleo-cytoplasmic large DNA viruses Pan-ocean meta-transcriptomic analysis of nucleo-cytoplasmic large DNA viruses ファージ・環境ウイルス研究会合同シンポジウム ファージ・環境ウイルス研究会合同シンポジウム ファージ・環境ウイルス研究会合同シンポジウム 2016/10/21 Japanese Poster presentation Disclose to all
Biodiversity and Chemical Biology of Marine and Terrestrial Life in the Philippine Region[Invited] Biodiversity and Chemical Biology of Marine and Terrestrial Life in the Philippine Region [Invited] Biodiversity and Chemical Biology of Marine and Terrestrial Life in the Philippine Region [Invited] Biodiversity and Chemical Biology of Marine and Terrestrial Life in the Philippine Region Biodiversity and Chemical Biology of Marine and Terrestrial Life in the Philippine Region Biodiversity and Chemical Biology of Marine and Terrestrial Life in the Philippine Region 2016/10/17 English Oral presentation(invited, special) Disclose to all
Investigation of Mouse Gut Microbiota Affected by Elental and Lipacreon Investigation of Mouse Gut Microbiota Affected by Elental and Lipacreon Investigation of Mouse Gut Microbiota Affected by Elental and Lipacreon Informatics in Biology, Medicine and Pharmacology 2016 Informatics in Biology, Medicine and Pharmacology 2016 Informatics in Biology, Medicine and Pharmacology 2016 2016/09/29 Japanese Poster presentation Disclose to all
A preliminary characterization of the genome of XacN1, a giant phage infecting the citrus canker agent Xanthomonas citri A preliminary characterization of the genome of XacN1, a giant phage infecting the citrus canker agent Xanthomonas citri A preliminary characterization of the genome of XacN1, a giant phage infecting the citrus canker agent Xanthomonas citri Informatics in Biology, Medicine and Pharmacology 2016 Informatics in Biology, Medicine and Pharmacology 2016 Informatics in Biology, Medicine and Pharmacology 2016 2016/09/29 Japanese Poster presentation Disclose to all
Ancient DNA repair genes from the virus world Ancient DNA repair genes from the virus world Ancient DNA repair genes from the virus world Extremophiles 2016 Extremophiles 2016 Extremophiles 2016 2016/09/13 English Poster presentation Disclose to all
ウイルスは生命か?-巨大ウイルスを中心に-[Invited] ウイルスは生命か?-巨大ウイルスを中心に- [Invited] ウイルスは生命か?-巨大ウイルスを中心に- [Invited] 第56回生物物理若手の会夏の学校 第56回生物物理若手の会夏の学校 第56回生物物理若手の会夏の学校 2016/09/04 Japanese Oral presentation(invited, special) Disclose to all
Global meta-transcriptomic analysis of nucleo-cytoplasmic large DNA viruses in the sea Global meta-transcriptomic analysis of nucleo-cytoplasmic large DNA viruses in the sea Global meta-transcriptomic analysis of nucleo-cytoplasmic large DNA viruses in the sea 16th Annual International Workshop on Bioinformatics and Systems Biology 16th Annual International Workshop on Bioinformatics and Systems Biology 16th Annual International Workshop on Bioinformatics and Systems Biology 2016/08/10 English Oral presentation(general) Disclose to all
The effect of Lipacreon and Elental on mouse gut microbiota The effect of Lipacreon and Elental on mouse gut microbiota The effect of Lipacreon and Elental on mouse gut microbiota 16th Annual International Workshop on Bioinformatics and Systems Biology 16th Annual International Workshop on Bioinformatics and Systems Biology 16th Annual International Workshop on Bioinformatics and Systems Biology 2016/08/09 English Oral presentation(general) Disclose to all
Seasonal dynamics of marine viral communities in Japanese coastal area revealed by genomic OTUs analysis Seasonal dynamics of marine viral communities in Japanese coastal area revealed by genomic OTUs analysis Seasonal dynamics of marine viral communities in Japanese coastal area revealed by genomic OTUs analysis 水圏微生物研究フォーラム 水圏微生物研究フォーラム 水圏微生物研究フォーラム 2016/08/09 Japanese Poster presentation Disclose to all
完全ゲノムから定量化した海洋ウイルスの多様性とその宿主予測 完全ゲノムから定量化した海洋ウイルスの多様性とその宿主予測 完全ゲノムから定量化した海洋ウイルスの多様性とその宿主予測 水圏微生物研究フォーラム 水圏微生物研究フォーラム 水圏微生物研究フォーラム 2016/08/09 Japanese Poster presentation Disclose to all
海洋巨大ウイルスの多様性と宿主予測[Invited] 海洋巨大ウイルスの多様性と宿主予測 [Invited] 海洋巨大ウイルスの多様性と宿主予測 [Invited] 水圏微生物研究フォーラム 水圏微生物研究フォーラム 水圏微生物研究フォーラム 2016/08/09 Japanese Oral presentation(invited, special) Disclose to all
Virus-host database: a manually curated resource for viral host prediction Virus-host database: a manually curated resource for viral host prediction Virus-host database: a manually curated resource for viral host prediction 8th Aquatic Virus Workshop 8th Aquatic Virus Workshop 8th Aquatic Virus Workshop 2016/07/13 English Oral presentation(general) Disclose to all
海洋ウイルス:環境ゲノムから見る多様性・相互作用・分布.[Invited] 海洋ウイルス:環境ゲノムから見る多様性・相互作用・分布. [Invited] 海洋ウイルス:環境ゲノムから見る多様性・相互作用・分布. [Invited] 日本海洋学会2016年度春季大会 日本海洋学会2016年度春季大会 日本海洋学会2016年度春季大会 2016/03/17 Japanese Oral presentation(invited, special) Disclose to all
完全長ゲノムに基づく海洋ウイルスの定量的動態解析とその宿主微生物の推定. 完全長ゲノムに基づく海洋ウイルスの定量的動態解析とその宿主微生物の推定. 完全長ゲノムに基づく海洋ウイルスの定量的動態解析とその宿主微生物の推定. 日本海洋学会2016年度春季大会 日本海洋学会2016年度春季大会 日本海洋学会2016年度春季大会 2016/03/12 Japanese Poster presentation Disclose to all
GenomeNet's services for metagenomics studies GenomeNet's services for metagenomics studies GenomeNet's services for metagenomics studies A New Age of Discovery for Aquatic Microeukaryotes A New Age of Discovery for Aquatic Microeukaryotes A New Age of Discovery for Aquatic Microeukaryotes 2016/01/27 English Poster presentation Disclose to all
巨大ウイルスは海洋生態系進化の原動力である 巨大ウイルスは海洋生態系進化の原動力である 巨大ウイルスは海洋生態系進化の原動力である 第37回日本分子生物学会年会(2014/11/25-27) 第37回日本分子生物学会年会(2014/11/25-27) 第37回日本分子生物学会年会(2014/11/25-27) Yokohama Yokohama Yokohama 2015/11/25 Japanese Disclose to all
Assessing the diversity of the Megaviridae giant viruses based on RNA polymerase beta genes Assessing the diversity of the Megaviridae giant viruses based on RNA polymerase beta genes Assessing the diversity of the Megaviridae giant viruses based on RNA polymerase beta genes Informatics in Biology, Medicine and Pharmacology 2015 Informatics in Biology, Medicine and Pharmacology 2015 Informatics in Biology, Medicine and Pharmacology 2015 2015/10/30 Japanese Poster presentation Disclose to all
Revealing complete genomes from metagenomes: a case study for viruses in the ocean Revealing complete genomes from metagenomes: a case study for viruses in the ocean Revealing complete genomes from metagenomes: a case study for viruses in the ocean Informatics in Biology, Medicine and Pharmacology 2015 Informatics in Biology, Medicine and Pharmacology 2015 Informatics in Biology, Medicine and Pharmacology 2015 2015/10/29 Japanese Oral presentation(general) Disclose to all
Relating the reaction types and phylogeny of type III polyketide synthases Relating the reaction types and phylogeny of type III polyketide synthases Relating the reaction types and phylogeny of type III polyketide synthases Informatics in Biology, Medicine and Pharmacology 2015 Informatics in Biology, Medicine and Pharmacology 2015 Informatics in Biology, Medicine and Pharmacology 2015 2015/10/29 English Oral presentation(general) Disclose to all
Metagenomic analysis of viral communities in Osaka bay, Japan Metagenomic analysis of viral communities in Osaka bay, Japan Metagenomic analysis of viral communities in Osaka bay, Japan Annual meeting of Japanese Society of Microbial Ecology, 2015 Annual meeting of Japanese Society of Microbial Ecology, 2015 Annual meeting of Japanese Society of Microbial Ecology, 2015 2015/10/18 Japanese Poster presentation Disclose to all
A viral proteomic tree server and its application to a marine metagenomic study A viral proteomic tree server and its application to a marine metagenomic study A viral proteomic tree server and its application to a marine metagenomic study Annual meeting of Japanese Society of Microbial Ecology, 2015 Annual meeting of Japanese Society of Microbial Ecology, 2015 Annual meeting of Japanese Society of Microbial Ecology, 2015 2015/10/18 Japanese Poster presentation Disclose to all
A GenomeNet resource for virus-host interaction network analyses A GenomeNet resource for virus-host interaction network analyses A GenomeNet resource for virus-host interaction network analyses Annual meeting of Japanese Society of Microbial Ecology, 2015 Annual meeting of Japanese Society of Microbial Ecology, 2015 Annual meeting of Japanese Society of Microbial Ecology, 2015 2015/10/18 Japanese Poster presentation Disclose to all
Diversity of marine giant DNA viruses Diversity of marine giant DNA viruses Diversity of marine giant DNA viruses International Workshop on Bioinformatics and Systems Biology 2015 International Workshop on Bioinformatics and Systems Biology 2015 International Workshop on Bioinformatics and Systems Biology 2015 2015/07/20 English Oral presentation(general) Disclose to all
海洋巨大ウイルスの多様性と進化.[Invited] 海洋巨大ウイルスの多様性と進化. [Invited] 海洋巨大ウイルスの多様性と進化. [Invited] JT生命誌研究館セミナー JT生命誌研究館セミナー JT生命誌研究館セミナー Tkatsuki Tkatsuki Tkatsuki 2015/06/18 Japanese Disclose to all
次世代シーケンサーを用いた未知の海洋細菌―ウイルス感染系の推定 次世代シーケンサーを用いた未知の海洋細菌―ウイルス感染系の推定 次世代シーケンサーを用いた未知の海洋細菌―ウイルス感染系の推定 日本水産学会春季大会(2015/3/27-31) 日本水産学会春季大会(2015/3/27-31) 日本水産学会春季大会(2015/3/27-31) Tokyo Tokyo Tokyo 2015/03/29 Japanese Disclose to all
メタオミクスによる海洋ウイルスと微生物群集の継時的観測 メタオミクスによる海洋ウイルスと微生物群集の継時的観測 メタオミクスによる海洋ウイルスと微生物群集の継時的観測 NGS現場の会 NGS現場の会 NGS現場の会 2015/03/29 Japanese Oral presentation(general) Disclose to all
海洋巨大ウイルスの進化と生態[Invited] 海洋巨大ウイルスの進化と生態 [Invited] 海洋巨大ウイルスの進化と生態 [Invited] 京都大学生態研センターセミナー 京都大学生態研センターセミナー 京都大学生態研センターセミナー 2015/02/20 English Oral presentation(general) Disclose to all
巨大ウイルスは海洋生態系進化の原動力である 巨大ウイルスは海洋生態系進化の原動力である 巨大ウイルスは海洋生態系進化の原動力である 第37回日本分子生物学会年会 第37回日本分子生物学会年会 第37回日本分子生物学会年会 Yokohama Yokohama Yokohama 2014/11/25 Japanese Disclose to all
ウイルスは生命か?−巨大ウイルスを中心に− ウイルスは生命か?−巨大ウイルスを中心に− ウイルスは生命か?−巨大ウイルスを中心に− 平成26年第二回化学研究所イブニングセミナー 平成26年第二回化学研究所イブニングセミナー 平成26年第二回化学研究所イブニングセミナー ICR,Uji ICR,Uji ICR,Uji 2014/11/12 Japanese Disclose to all
次世代配列解析による海洋ウイルスと宿主の相互作用の解析 次世代配列解析による海洋ウイルスと宿主の相互作用の解析 次世代配列解析による海洋ウイルスと宿主の相互作用の解析 生命情報科学若手の会 第6回研究会(2014/10/29-30) 生命情報科学若手の会 第6回研究会(2014/10/29-30) 生命情報科学若手の会 第6回研究会(2014/10/29-30) CDB, Kobe CDB, Kobe CDB, Kobe 2014/10/29 Japanese Disclose to all
Why do some viruses encode amino acid biosynthetic genes? Why do some viruses encode amino acid biosynthetic genes? Why do some viruses encode amino acid biosynthetic genes? Informatics in Biology, Medicine and Pharmocology 2014(2014/10/2-4) Informatics in Biology, Medicine and Pharmocology 2014(2014/10/2-4) Informatics in Biology, Medicine and Pharmocology 2014(2014/10/2-4) Sendai Sendai Sendai 2014/10/02 English Disclose to all
Marine viral genomics: from genetic diversity to ecological implications.[Invited] Marine viral genomics: from genetic diversity to ecological implications. [Invited] Marine viral genomics: from genetic diversity to ecological implications. [Invited] Sweden-Kyoto Symposium(2014/9/11-12) Sweden-Kyoto Symposium(2014/9/11-12) Sweden-Kyoto Symposium(2014/9/11-12) Stockholm University/Karolinska Institute, Stockholm Stockholm University/Karolinska Institute, Stockholm Stockholm University/Karolinska Institute, Stockholm 2014/09/02 English Disclose to all
Exploring Polyketide Synthases from Huge Metagenomic Samples. Exploring Polyketide Synthases from Huge Metagenomic Samples. Exploring Polyketide Synthases from Huge Metagenomic Samples. 14th International Workshop on Bioinformatics and Systems Biology (IBSB) 2014/7/20-25 14th International Workshop on Bioinformatics and Systems Biology (IBSB) 2014/7/20-25 14th International Workshop on Bioinformatics and Systems Biology (IBSB) 2014/7/20-25 Berlin Berlin Berlin 2014/07/21 English Disclose to all
Tools to Interpret Large Genomic and Metagenomic Data using KEGG Databases. Tools to Interpret Large Genomic and Metagenomic Data using KEGG Databases. Tools to Interpret Large Genomic and Metagenomic Data using KEGG Databases. 14th International Workshop on Bioinformatics and Systems Biology (IBSB) 2014/7/20-25 14th International Workshop on Bioinformatics and Systems Biology (IBSB) 2014/7/20-25 14th International Workshop on Bioinformatics and Systems Biology (IBSB) 2014/7/20-25 Berlin Berlin Berlin 2014/07/20 English Disclose to all
Recent bioinformatics development in quantitative metagenomics.[Invited] Recent bioinformatics development in quantitative metagenomics. [Invited] Recent bioinformatics development in quantitative metagenomics. [Invited] The 3rd International Seminar on Biodiversity and Evolution (June 6, 2014, Kyoto Kyoiku Bunka Center, Kyoto, Oral presentation) The 3rd International Seminar on Biodiversity and Evolution (June 6, 2014, Kyoto Kyoiku Bunka Center, Kyoto, Oral presentation) The 3rd International Seminar on Biodiversity and Evolution (June 6, 2014, Kyoto Kyoiku Bunka Center, Kyoto, Oral presentation) Kyoto Kyoto Kyoto 2014/06/06 English Disclose to all
Giruses in the Ocean: from diversity to their ecological significance (in Japanese).[Invited] Giruses in the Ocean: from diversity to their ecological significance (in Japanese). [Invited] Giruses in the Ocean: from diversity to their ecological significance (in Japanese). [Invited] Annual meeting of the Sciety of Genome Microbiology Japan - Symposium 1(2014/3/7-9) Annual meeting of the Sciety of Genome Microbiology Japan - Symposium 1(2014/3/7-9) Annual meeting of the Sciety of Genome Microbiology Japan - Symposium 1(2014/3/7-9) Tokyo University of Agriculture, Tokyo Tokyo University of Agriculture, Tokyo Tokyo University of Agriculture, Tokyo 2014/03/08 English Disclose to all
Quantifying large DNA viruses in marine ecosystems. Quantifying large DNA viruses in marine ecosystems. Quantifying large DNA viruses in marine ecosystems. Ocean Science Meeting 2014, Session 075(2014/2/23−28) Ocean Science Meeting 2014, Session 075(2014/2/23−28) Ocean Science Meeting 2014, Session 075(2014/2/23−28) Hawai, USA Hawai, USA Hawai, USA 2014/02/25 English Disclose to all
Giant viruses: a unique entry to the natural diversity of DNA processing genes.[Invited] Giant viruses: a unique entry to the natural diversity of DNA processing genes. [Invited] Giant viruses: a unique entry to the natural diversity of DNA processing genes. [Invited] Second Bioscience and Biotechnology International Symposium: The Nucleic Acid World - Interface between Biology and Chemistry. Second Bioscience and Biotechnology International Symposium: The Nucleic Acid World - Interface between Biology and Chemistry. Second Bioscience and Biotechnology International Symposium: The Nucleic Acid World - Interface between Biology and Chemistry. Suzukakedai Campus, Tokyo Institute of Technology., Yokohama Suzukakedai Campus, Tokyo Institute of Technology., Yokohama Suzukakedai Campus, Tokyo Institute of Technology., Yokohama 2014/01/29 English Disclose to all
Quantifying nucleo-cytoplasmic large DNA viruses in marine ecosystems.[Invited] Quantifying nucleo-cytoplasmic large DNA viruses in marine ecosystems. [Invited] Quantifying nucleo-cytoplasmic large DNA viruses in marine ecosystems. [Invited] International Symposium on Giant Virus Biology(2013/11/17-20) International Symposium on Giant Virus Biology(2013/11/17-20) International Symposium on Giant Virus Biology(2013/11/17-20) Ringberg Castle, Tegernsee, Germany Ringberg Castle, Tegernsee, Germany Ringberg Castle, Tegernsee, Germany 2013/11/19 English Disclose to all
Richness of NCLDV genes. Richness of NCLDV genes. Richness of NCLDV genes. Tara-Oceans Biodiversity Workshop, ENS, Paris(2013/7/4−5) Tara-Oceans Biodiversity Workshop, ENS, Paris(2013/7/4−5) Tara-Oceans Biodiversity Workshop, ENS, Paris(2013/7/4−5) Paris, France Paris, France Paris, France 2013/07/05 English Disclose to all
Eco-system biology and modeling (WP5 of OCEANOMICS). Eco-system biology and modeling (WP5 of OCEANOMICS). Eco-system biology and modeling (WP5 of OCEANOMICS). OCEANOMICS Kick-off meeting, UPMC, Paris OCEANOMICS Kick-off meeting, UPMC, Paris OCEANOMICS Kick-off meeting, UPMC, Paris Paris, France Paris, France Paris, France 2013/03/19 English Disclose to all
The big viruses in marine environments. The big viruses in marine environments. The big viruses in marine environments. Seminar at Nakai laboratory, Tokyo Univ., Tokyo Seminar at Nakai laboratory, Tokyo Univ., Tokyo Seminar at Nakai laboratory, Tokyo Univ., Tokyo Tokyo Tokyo Tokyo 2013/02/12 English Disclose to all
A reference database for viruses and its application for the analysis of TARA-OCEANS metagenomic datasets from 3 Mediterranean stations. A reference database for viruses and its application for the analysis of TARA-OCEANS metagenomic datasets from 3 Mediterranean stations. A reference database for viruses and its application for the analysis of TARA-OCEANS metagenomic datasets from 3 Mediterranean stations. MicroB3 workshop: Exploring Ecosystems Biology WP6(2012/12/6−7) MicroB3 workshop: Exploring Ecosystems Biology WP6(2012/12/6−7) MicroB3 workshop: Exploring Ecosystems Biology WP6(2012/12/6−7) Istanbul, Turykey Istanbul, Turykey Istanbul, Turykey 2012/12/06 English Disclose to all
The wonder world of small giants in the sea.[Invited] The wonder world of small giants in the sea. [Invited] The wonder world of small giants in the sea. [Invited] Lecture at Tokyo Institute of Technology, Tokyo Lecture at Tokyo Institute of Technology, Tokyo Lecture at Tokyo Institute of Technology, Tokyo Ookayama, Tokyo Ookayama, Tokyo Ookayama, Tokyo 2012/06/14 English Disclose to all
Giant viruses in marine environments. Giant viruses in marine environments. Giant viruses in marine environments. Tara Japan Tour(2012/2/11-19) Tara Japan Tour(2012/2/11-19) Tara Japan Tour(2012/2/11-19) Feb 11-19; JAMSTEC, Yokosuka, Feb-13; Kyoto Univ., Kyoto, Feb-14; National Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research Agency, Hiroshima Feb 11-19; JAMSTEC, Yokosuka, Feb-13; Kyoto Univ., Kyoto, Feb-14; National Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research Agency, Hiroshima Feb 11-19; JAMSTEC, Yokosuka, Feb-13; Kyoto Univ., Kyoto, Feb-14; National Research Institute of Fisheries and Environment of Inland Sea, Fisheries Research Agency, Hiroshima 2012/02/17 English Disclose to all
Diversity of DNA informational proteins originating from viruses. Diversity of DNA informational proteins originating from viruses. Diversity of DNA informational proteins originating from viruses. Aquatic Virus Workshop 6(2011/10/30-11/3) Aquatic Virus Workshop 6(2011/10/30-11/3) Aquatic Virus Workshop 6(2011/10/30-11/3) Texel, The Netherlands Texel, The Netherlands Texel, The Netherlands 2011/11/02 English Disclose to all
The girus gene pool.[Invited] The girus gene pool. [Invited] The girus gene pool. [Invited] ANR/ARP workshop: International conference on the Viruses of the Environement(2011/3/22-23) ANR/ARP workshop: International conference on the Viruses of the Environement(2011/3/22-23) ANR/ARP workshop: International conference on the Viruses of the Environement(2011/3/22-23) Heidelberg, Germany Heidelberg, Germany Heidelberg, Germany 2011/03/23 English Disclose to all
Relationship between algae and their viruses - from the viewpoint of genomics. (pp.14-15) Relationship between algae and their viruses - from the viewpoint of genomics. (pp.14-15) Relationship between algae and their viruses - from the viewpoint of genomics. (pp.14-15) Symposium of National Bio-Resource Project 'Algae' Symposium of National Bio-Resource Project 'Algae' Symposium of National Bio-Resource Project 'Algae' Tokyo Tokyo Tokyo 2011/01/29 English Disclose to all
Genomics and metagenomics of marine giruses.[Invited] Genomics and metagenomics of marine giruses. [Invited] Genomics and metagenomics of marine giruses. [Invited] ANR/ARP workshop: Combining high througput genomics, quantitative imaging, in situ oceanographic and satellite data and modeling to better understand plankton ecosystems at the planetary level(2011/1/10-11) ANR/ARP workshop: Combining high througput genomics, quantitative imaging, in situ oceanographic and satellite data and modeling to better understand plankton ecosystems at the planetary level(2011/1/10-11) ANR/ARP workshop: Combining high througput genomics, quantitative imaging, in situ oceanographic and satellite data and modeling to better understand plankton ecosystems at the planetary level(2011/1/10-11) Villefranche, France Villefranche, France Villefranche, France 2011/01/11 English Disclose to all
Exploring the biodiversity of the world largest ecosystem: BioMarKs project first results and bioinformatics challenges. Exploring the biodiversity of the world largest ecosystem: BioMarKs project first results and bioinformatics challenges. Exploring the biodiversity of the world largest ecosystem: BioMarKs project first results and bioinformatics challenges. JOBIM 2010(2010/9/7-9) JOBIM 2010(2010/9/7-9) JOBIM 2010(2010/9/7-9) Montpellier, France Montpellier, France Montpellier, France 2010/09/07 English Disclose to all
Mimivirus and other giants of the virus world.[Invited] Mimivirus and other giants of the virus world. [Invited] Mimivirus and other giants of the virus world. [Invited] Fourth European Congress of Virology(2010/44/7-11) Fourth European Congress of Virology(2010/44/7-11) Fourth European Congress of Virology(2010/44/7-11) Cernobbio, Italy Cernobbio, Italy Cernobbio, Italy 2010/04/07 English Disclose to all
The goal of Tara-Girus.[Invited] The goal of Tara-Girus. [Invited] The goal of Tara-Girus. [Invited] Tara Retreat Meeting(2010/2/1-3) Tara Retreat Meeting(2010/2/1-3) Tara Retreat Meeting(2010/2/1-3) Heidlberg, Germany Heidlberg, Germany Heidlberg, Germany 2010/02/01 English Disclose to all
The ocean is a treasury of strange viruses. The ocean is a treasury of strange viruses. The ocean is a treasury of strange viruses. International Symposium on Marine Genomics 2009 International Symposium on Marine Genomics 2009 International Symposium on Marine Genomics 2009 Okinawa Okinawa Okinawa 2009/12/17 English Disclose to all
Mimivirus, its sisters and cousins: towards revealing the hidden world of giant viruses. Mimivirus, its sisters and cousins: towards revealing the hidden world of giant viruses. Mimivirus, its sisters and cousins: towards revealing the hidden world of giant viruses. Seminar Observatoire Oceanologique de Villefranche-sur-Mer Seminar Observatoire Oceanologique de Villefranche-sur-Mer Seminar Observatoire Oceanologique de Villefranche-sur-Mer Villefranche-sur-Mer, Framce Villefranche-sur-Mer, Framce Villefranche-sur-Mer, Framce 2009/12/10 English Disclose to all
The frontier of the study of dinoflagellate-infecting viruses. The frontier of the study of dinoflagellate-infecting viruses. The frontier of the study of dinoflagellate-infecting viruses. The 25-th conference of the Japanese Society of Microbial Ecology The 25-th conference of the Japanese Society of Microbial Ecology The 25-th conference of the Japanese Society of Microbial Ecology Hiroshima Hiroshima Hiroshima 2009/11/21 English Disclose to all
How the life cycle impacts transcriptome and genome contents in Emiliania huxleyi. How the life cycle impacts transcriptome and genome contents in Emiliania huxleyi. How the life cycle impacts transcriptome and genome contents in Emiliania huxleyi. Emiliania huxleyi Jamboree(2009/6/17-18) Emiliania huxleyi Jamboree(2009/6/17-18) Emiliania huxleyi Jamboree(2009/6/17-18) Woods Hole Oceanographic Institute Woods Hole Oceanographic Institute Woods Hole Oceanographic Institute 2009/06/18 English Disclose to all
Horizontal gene transfer between Emiliania huxleyi and viruses (II). Horizontal gene transfer between Emiliania huxleyi and viruses (II). Horizontal gene transfer between Emiliania huxleyi and viruses (II). Emiliania huxleyi Jamboree(2009/6/17-18) Emiliania huxleyi Jamboree(2009/6/17-18) Emiliania huxleyi Jamboree(2009/6/17-18) Woods Hole Oceanographic Institute Woods Hole Oceanographic Institute Woods Hole Oceanographic Institute 2009/06/17 English Disclose to all
Unveiling the hidden life of a very visible phytoplankton: deep transcriptomic comparison of 1N and 2N life phases of Emiliania huxleyi. Unveiling the hidden life of a very visible phytoplankton: deep transcriptomic comparison of 1N and 2N life phases of Emiliania huxleyi. Unveiling the hidden life of a very visible phytoplankton: deep transcriptomic comparison of 1N and 2N life phases of Emiliania huxleyi. ASLO Aquatic Sciences Meeting 2009(2009/1/25-30) ASLO Aquatic Sciences Meeting 2009(2009/1/25-30) ASLO Aquatic Sciences Meeting 2009(2009/1/25-30) Nice, France Nice, France Nice, France 2009/01/25 English Disclose to all
Host-like genes in giant DNA viruses.[Invited] Host-like genes in giant DNA viruses. [Invited] Host-like genes in giant DNA viruses. [Invited] Lecture at Kyoto University(2008/12/19-22) Lecture at Kyoto University(2008/12/19-22) Lecture at Kyoto University(2008/12/19-22) Kyoto Kyoto Kyoto 2008/12/22 English Disclose to all
Aquatic viruses: manipulators of host metabolism and a reservoir of new genes.[Invited] Aquatic viruses: manipulators of host metabolism and a reservoir of new genes. [Invited] Aquatic viruses: manipulators of host metabolism and a reservoir of new genes. [Invited] Lecture at Universite Blaise-Pascal and Universite D'Auvergne Lecture at Universite Blaise-Pascal and Universite D'Auvergne Lecture at Universite Blaise-Pascal and Universite D'Auvergne Aubiere, France Aubiere, France Aubiere, France 2008/11/26 English Disclose to all
Horizontal gene transfer between Emiliania huxleyi and viruses. Horizontal gene transfer between Emiliania huxleyi and viruses. Horizontal gene transfer between Emiliania huxleyi and viruses. Emiliania huxleyi Jamboree(2008/10/15-17) Emiliania huxleyi Jamboree(2008/10/15-17) Emiliania huxleyi Jamboree(2008/10/15-17) DOE-JGI Walnut Creek California, USA DOE-JGI Walnut Creek California, USA DOE-JGI Walnut Creek California, USA 2008/10/15 English Disclose to all
Transcriptomic comparison of 1N and 2N phases of Emiliania huxleyi. Transcriptomic comparison of 1N and 2N phases of Emiliania huxleyi. Transcriptomic comparison of 1N and 2N phases of Emiliania huxleyi. Emiliania huxleyi Jamboree(2008/10/15-17) Emiliania huxleyi Jamboree(2008/10/15-17) Emiliania huxleyi Jamboree(2008/10/15-17) DOE-JGI Walnut Creek California, USA DOE-JGI Walnut Creek California, USA DOE-JGI Walnut Creek California, USA 2008/10/15 English Disclose to all
Distribution of giant viruses in marine environments. Distribution of giant viruses in marine environments. Distribution of giant viruses in marine environments. The 13th France-Japan Oceanography Symposium(2008/9/8-10) The 13th France-Japan Oceanography Symposium(2008/9/8-10) The 13th France-Japan Oceanography Symposium(2008/9/8-10) Marseille, France Marseille, France Marseille, France 2008/09/10 English Disclose to all
Transcription of the phycobilisome degradation gene in cyanophage MA-LMM01 infecting Microcystis aeruginosa. Transcription of the phycobilisome degradation gene in cyanophage MA-LMM01 infecting Microcystis aeruginosa. Transcription of the phycobilisome degradation gene in cyanophage MA-LMM01 infecting Microcystis aeruginosa. The 5th Aquatic Virus Workshop(2008/7/6-11) The 5th Aquatic Virus Workshop(2008/7/6-11) The 5th Aquatic Virus Workshop(2008/7/6-11) Vancouver, Canada Vancouver, Canada Vancouver, Canada 2008/07/09 English Disclose to all
Genetic and biochemical characterization of the lytic enzymes from cyanophage MA-LMM01 infecting Microcystis aeruginosa Genetic and biochemical characterization of the lytic enzymes from cyanophage MA-LMM01 infecting Microcystis aeruginosa Genetic and biochemical characterization of the lytic enzymes from cyanophage MA-LMM01 infecting Microcystis aeruginosa The 5th Aquatic Virus Workshop(2008/7/6-11) The 5th Aquatic Virus Workshop(2008/7/6-11) The 5th Aquatic Virus Workshop(2008/7/6-11) Vancouver, Canada Vancouver, Canada Vancouver, Canada 2008/07/09 English Disclose to all
Mimivirus and Mimiviridae: towards a new family of microalgae viruses. Mimivirus and Mimiviridae: towards a new family of microalgae viruses. Mimivirus and Mimiviridae: towards a new family of microalgae viruses. The 5th Aquatic Virus Workshop(2008/7/6-11) The 5th Aquatic Virus Workshop(2008/7/6-11) The 5th Aquatic Virus Workshop(2008/7/6-11) Vancouver, Canada Vancouver, Canada Vancouver, Canada 2008/07/08 English Disclose to all
Giant viruses are old and ubiquitous. Giant viruses are old and ubiquitous. Giant viruses are old and ubiquitous. Seminaire MAGAMA Seminaire MAGAMA Seminaire MAGAMA Marseille, France Marseille, France Marseille, France 2008/02/28 English Disclose to all
Bioinformatics and evolutionary analysis of NCLDVs. Bioinformatics and evolutionary analysis of NCLDVs. Bioinformatics and evolutionary analysis of NCLDVs. Genomics and Ecology of Aquatic Viruses(20082/11-13) Genomics and Ecology of Aquatic Viruses(20082/11-13) Genomics and Ecology of Aquatic Viruses(20082/11-13) Banyuls-sur-Mer, France Banyuls-sur-Mer, France Banyuls-sur-Mer, France 2008/02/11 English Disclose to all
The genome of the freshwater cyanophage Ma-LMM01 infecting toxic Microcystis aeruginosa. The genome of the freshwater cyanophage Ma-LMM01 infecting toxic Microcystis aeruginosa. The genome of the freshwater cyanophage Ma-LMM01 infecting toxic Microcystis aeruginosa. Genomics and Ecology of Aquatic Viruses(20082/11-13) Genomics and Ecology of Aquatic Viruses(20082/11-13) Genomics and Ecology of Aquatic Viruses(20082/11-13) Banyuls-sur-Mer, France Banyuls-sur-Mer, France Banyuls-sur-Mer, France 2008/02/11 English Disclose to all
Surprising discoveries from genomics of intracellular parasites. Surprising discoveries from genomics of intracellular parasites. Surprising discoveries from genomics of intracellular parasites. Seminar at The Institute for Bioinformatics Seminar at The Institute for Bioinformatics Seminar at The Institute for Bioinformatics Munich, Germany Munich, Germany Munich, Germany 2007/10/25 English Disclose to all
New insights into the evolutionary behaviour of giant virus genomes.[Invited] New insights into the evolutionary behaviour of giant virus genomes. [Invited] New insights into the evolutionary behaviour of giant virus genomes. [Invited] Bioinformatics Colloquium Bioinformatics Colloquium Bioinformatics Colloquium Munich, Germany Munich, Germany Munich, Germany 2007/10/24 English Disclose to all
Temporal gene transcription of cyanophage Ma-LMM01 during infection of a toxic cyanobacterium Microcystis aeruginosa. Temporal gene transcription of cyanophage Ma-LMM01 during infection of a toxic cyanobacterium Microcystis aeruginosa. Temporal gene transcription of cyanophage Ma-LMM01 during infection of a toxic cyanobacterium Microcystis aeruginosa. The 7th International Conference on Toxic Cyanobacteria(2007/8/5-10) The 7th International Conference on Toxic Cyanobacteria(2007/8/5-10) The 7th International Conference on Toxic Cyanobacteria(2007/8/5-10) Rio das Pedras, Brazil Rio das Pedras, Brazil Rio das Pedras, Brazil 2007/08/05 English Disclose to all
Comparative genomics of large DNA viruses. Comparative genomics of large DNA viruses. Comparative genomics of large DNA viruses. Seminar at l'Universite d'Aix Marseille I Seminar at l'Universite d'Aix Marseille I Seminar at l'Universite d'Aix Marseille I Marseille, France Marseille, France Marseille, France 2007/06/11 English Disclose to all
Virus-host genome comparison.[Invited] Virus-host genome comparison. [Invited] Virus-host genome comparison. [Invited] E. huxleyi Genome Jamboree(20073/19-20) E. huxleyi Genome Jamboree(20073/19-20) E. huxleyi Genome Jamboree(20073/19-20) Roscoff, France Roscoff, France Roscoff, France 2007/03/19 English Disclose to all
Analyses comparatives et quantitatives des genomes viraux. Analyses comparatives et quantitatives des genomes viraux. Analyses comparatives et quantitatives des genomes viraux. RAVIE(2007/1/25-26) RAVIE(2007/1/25-26) RAVIE(2007/1/25-26) Aubiere, France Aubiere, France Aubiere, France 2007/01/25 English Disclose to all
Alien genes in viruses: biased biological roles and variable frequencies. Alien genes in viruses: biased biological roles and variable frequencies. Alien genes in viruses: biased biological roles and variable frequencies. 10th Evolutionary Biology Meeting at Marseille(2006/9/20-22) 10th Evolutionary Biology Meeting at Marseille(2006/9/20-22) 10th Evolutionary Biology Meeting at Marseille(2006/9/20-22) Marseille, France Marseille, France Marseille, France 2006/09/20 English Disclose to all
Genome sequence of Rickettsia bellii suggests the role of amoebae in ancestral gene transfers between intracellular pathogens.[Invited] Genome sequence of Rickettsia bellii suggests the role of amoebae in ancestral gene transfers between intracellular pathogens. [Invited] Genome sequence of Rickettsia bellii suggests the role of amoebae in ancestral gene transfers between intracellular pathogens. [Invited] International symposium on the comparative biology of the alpha-proteobacteria(2006/4/26-29) International symposium on the comparative biology of the alpha-proteobacteria(2006/4/26-29) International symposium on the comparative biology of the alpha-proteobacteria(2006/4/26-29) Blacksburg, Virginia, USA Blacksburg, Virginia, USA Blacksburg, Virginia, USA 2006/04/27 English Disclose to all
Le genome de Rickettsia bellii - le role d'amibe dans l'evolution de pathogenes intracellulaires. Le genome de Rickettsia bellii - le role d'amibe dans l'evolution de pathogenes intracellulaires. Le genome de Rickettsia bellii - le role d'amibe dans l'evolution de pathogenes intracellulaires. IFR-48 seminar IFR-48 seminar IFR-48 seminar Marseille, France Marseille, France Marseille, France 2006/04/22 English Disclose to all
Comparative evolutionary genomics of Rickettsia. Comparative evolutionary genomics of Rickettsia. Comparative evolutionary genomics of Rickettsia. CBRC seminar CBRC seminar CBRC seminar Tokyo Tokyo Tokyo 2006/03/24 English Disclose to all
Lessons from Genomics of Rickettsia and Tropheryma.[Invited] Lessons from Genomics of Rickettsia and Tropheryma. [Invited] Lessons from Genomics of Rickettsia and Tropheryma. [Invited] International Symposium From Genomics to Chemical Genomics - 10th Anniversary of KEGG (2005/12/15-16) International Symposium From Genomics to Chemical Genomics - 10th Anniversary of KEGG (2005/12/15-16) International Symposium From Genomics to Chemical Genomics - 10th Anniversary of KEGG (2005/12/15-16) Kyoto Kyoto Kyoto 2005/12/15 English Disclose to all
Mimivirus & Evolution du Vivant.[Invited] Mimivirus & Evolution du Vivant. [Invited] Mimivirus & Evolution du Vivant. [Invited] Reunion Evolution Virale(2005/11/7-8) Reunion Evolution Virale(2005/11/7-8) Reunion Evolution Virale(2005/11/7-8) Montpelliker, France Montpelliker, France Montpelliker, France 2005/11/07 English Disclose to all
What have we learned from microbial genome projects.[Invited] What have we learned from microbial genome projects. [Invited] What have we learned from microbial genome projects. [Invited] Workshop GENOMED-HEALTH(2005/3/4-5) Workshop GENOMED-HEALTH(2005/3/4-5) Workshop GENOMED-HEALTH(2005/3/4-5) Tunis, Tunisia Tunis, Tunisia Tunis, Tunisia 2005/03/04 English Disclose to all
An approach to generate testable hypotheses in microbiology. An approach to generate testable hypotheses in microbiology. An approach to generate testable hypotheses in microbiology. 5th International Conference on Systems Biology(2004/10/9-13) 5th International Conference on Systems Biology(2004/10/9-13) 5th International Conference on Systems Biology(2004/10/9-13) Heidelberg, Germany Heidelberg, Germany Heidelberg, Germany 2004/10/12 English Disclose to all
Outils bio-informatiques pour la prot_omique - Comparaison TheGPM/Xcalibur Sequest - Gelprint: g_n_ration de gels 2D in-silico. Outils bio-informatiques pour la prot_omique - Comparaison TheGPM/Xcalibur Sequest - Gelprint: g_n_ration de gels 2D in-silico. Outils bio-informatiques pour la prot_omique - Comparaison TheGPM/Xcalibur Sequest - Gelprint: g_n_ration de gels 2D in-silico. Journ_e technique du R_seau National Genopole, "Quelle informatique et bioinformatique pour la prot_omique ?" Journ_e technique du R_seau National Genopole, "Quelle informatique et bioinformatique pour la prot_omique ?" Journ_e technique du R_seau National Genopole, "Quelle informatique et bioinformatique pour la prot_omique ?" Grenoble, France Grenoble, France Grenoble, France 2004/06/01 English Disclose to all
A new database towards rational design of culture conditions of obligate parasites. A new database towards rational design of culture conditions of obligate parasites. A new database towards rational design of culture conditions of obligate parasites. VI_me Cogr_s de la SFM VI_me Cogr_s de la SFM VI_me Cogr_s de la SFM Bordeaux, France Bordeaux, France Bordeaux, France 2004/05/11 English Disclose to all
Rickettsia and Tropheryma: Lessons from small bacterial genomes. Rickettsia and Tropheryma: Lessons from small bacterial genomes. Rickettsia and Tropheryma: Lessons from small bacterial genomes. CBRC seminar CBRC seminar CBRC seminar Tokyo Tokyo Tokyo 2003/12/22 English Disclose to all
Rickettsia and Tropheryma: Lessons from small parasitic bacterial genomes.[Invited] Rickettsia and Tropheryma: Lessons from small parasitic bacterial genomes. [Invited] Rickettsia and Tropheryma: Lessons from small parasitic bacterial genomes. [Invited] Second JSPS Forum, "Postgenome" Second JSPS Forum, "Postgenome" Second JSPS Forum, "Postgenome" Strasbourg, France Strasbourg, France Strasbourg, France 2003/11/28 English Disclose to all
Bioinformatics and structural genomics of intracellular pathogens and E. coli.[Invited] Bioinformatics and structural genomics of intracellular pathogens and E. coli. [Invited] Bioinformatics and structural genomics of intracellular pathogens and E. coli. [Invited] E. coli Workshop: Towards New Biology in 21st Century(2003/10/15-17) E. coli Workshop: Towards New Biology in 21st Century(2003/10/15-17) E. coli Workshop: Towards New Biology in 21st Century(2003/10/15-17) Awaji Awaji Awaji 2003/10/15 English Disclose to all
Genome sequence of Tropheryma whipplei Twist: a small human pathogen of the high G+C Gram-positive bacteria.[Invited] Genome sequence of Tropheryma whipplei Twist: a small human pathogen of the high G+C Gram-positive bacteria. [Invited] Genome sequence of Tropheryma whipplei Twist: a small human pathogen of the high G+C Gram-positive bacteria. [Invited] HAMAP Workshop on Microbial Annotation(2003/6/2-4) HAMAP Workshop on Microbial Annotation(2003/6/2-4) HAMAP Workshop on Microbial Annotation(2003/6/2-4) xxx xxx xxx 2003/06/02 English Disclose to all
Comparison of whole becterial genomes. Comparison of whole becterial genomes. Comparison of whole becterial genomes. International Congress of Molecular Infectiology 2000(2000/3/29-31) International Congress of Molecular Infectiology 2000(2000/3/29-31) International Congress of Molecular Infectiology 2000(2000/3/29-31) Marseille, France Marseille, France Marseille, France 2003/03/29 English Disclose to all
Mechanisms of genome evolution in Rickettsia.[Invited] Mechanisms of genome evolution in Rickettsia. [Invited] Mechanisms of genome evolution in Rickettsia. [Invited] International Summer School - From Genome to Life(2002/7/15-27) International Summer School - From Genome to Life(2002/7/15-27) International Summer School - From Genome to Life(2002/7/15-27) Corsica, France Corsica, France Corsica, France 2002/07/15 English Disclose to all
Protein coding palindromes in Rickettsia: A unique mechanism to create novel protein sequences. Protein coding palindromes in Rickettsia: A unique mechanism to create novel protein sequences. Protein coding palindromes in Rickettsia: A unique mechanism to create novel protein sequences. Molecular Evolution - International conference jointly organized by ISME and SMBE(2002/6/13-16) Molecular Evolution - International conference jointly organized by ISME and SMBE(2002/6/13-16) Molecular Evolution - International conference jointly organized by ISME and SMBE(2002/6/13-16) Sorrento - Naples - Italy Sorrento - Naples - Italy Sorrento - Naples - Italy 2002/06/13 English Disclose to all
Selfish DNA parasitizing protein-coding genes of Rickettsia. Selfish DNA parasitizing protein-coding genes of Rickettsia. Selfish DNA parasitizing protein-coding genes of Rickettsia. Journ_es _volution Biologique(2001/6/27-29) Journ_es _volution Biologique(2001/6/27-29) Journ_es _volution Biologique(2001/6/27-29) Marseille, France Marseille, France Marseille, France 2001/06/27 English Disclose to all
Rickettsia conorii complete genome sequencing: Preliminary survey. Rickettsia conorii complete genome sequencing: Preliminary survey. Rickettsia conorii complete genome sequencing: Preliminary survey. Genomes 2000(2000/4/11-15) Genomes 2000(2000/4/11-15) Genomes 2000(2000/4/11-15) Paris, France Paris, France Paris, France 2000/04/11 English Disclose to all
Unexpected selfish DNA in protein coding regions of Rickettsia.[Invited] Unexpected selfish DNA in protein coding regions of Rickettsia. [Invited] Unexpected selfish DNA in protein coding regions of Rickettsia. [Invited] 4th Annual Conference on Computational Genomics (TIGR) 4th Annual Conference on Computational Genomics (TIGR) 4th Annual Conference on Computational Genomics (TIGR) xxx xxx xxx 2000 English Disclose to all
Detection of co-regulated genes by comparative analysis of microbial genomes. (pp.304-305) Detection of co-regulated genes by comparative analysis of microbial genomes. (pp.304-305) Detection of co-regulated genes by comparative analysis of microbial genomes. (pp.304-305) Genome Informatics Workshop 1998(1998/12/10-11) Genome Informatics Workshop 1998(1998/12/10-11) Genome Informatics Workshop 1998(1998/12/10-11) Tokyo Tokyo Tokyo 1998/12/10 English Disclose to all
Extracting regulatory signals from the upstream region of co-expressed genes derived from DNA microarray experiments. (pp.306-307) Extracting regulatory signals from the upstream region of co-expressed genes derived from DNA microarray experiments. (pp.306-307) Extracting regulatory signals from the upstream region of co-expressed genes derived from DNA microarray experiments. (pp.306-307) Genome Informatics Workshop 1998(1998/12/10-11) Genome Informatics Workshop 1998(1998/12/10-11) Genome Informatics Workshop 1998(1998/12/10-11) Tokyo Tokyo Tokyo 1998/12/10 English Disclose to all
Automatic detection of gene clusters by P-quasi complete linkage grouping. (pp.300-301) Automatic detection of gene clusters by P-quasi complete linkage grouping. (pp.300-301) Automatic detection of gene clusters by P-quasi complete linkage grouping. (pp.300-301) Genome Informatics Workshop 1998(1998/12/10-11) Genome Informatics Workshop 1998(1998/12/10-11) Genome Informatics Workshop 1998(1998/12/10-11) Tokyo Tokyo Tokyo 1998/12/10 English Disclose to all
Constructing and annotating GENES database in KEGG. (pp.226-227) Constructing and annotating GENES database in KEGG. (pp.226-227) Constructing and annotating GENES database in KEGG. (pp.226-227) Genome Informatics Workshop 1998(1998/12/10-11) Genome Informatics Workshop 1998(1998/12/10-11) Genome Informatics Workshop 1998(1998/12/10-11) Tokyo Tokyo Tokyo 1998/12/10 English Disclose to all
Integrated analysis of metabolic pathways, sequence evolution and genome organization.[Invited] Integrated analysis of metabolic pathways, sequence evolution and genome organization. [Invited] Integrated analysis of metabolic pathways, sequence evolution and genome organization. [Invited] Dagstuhl Seminar - Modeling and Simulation of Gene Regulation and Metabolic Pathway(1998/6/21-26) Dagstuhl Seminar - Modeling and Simulation of Gene Regulation and Metabolic Pathway(1998/6/21-26) Dagstuhl Seminar - Modeling and Simulation of Gene Regulation and Metabolic Pathway(1998/6/21-26) Schloss Dagstuhl, Germany Schloss Dagstuhl, Germany Schloss Dagstuhl, Germany 1998/06/21 English Disclose to all
Reconstruction and prediction of biochemical pathways from genomic sequences using KEGG. Reconstruction and prediction of biochemical pathways from genomic sequences using KEGG. Reconstruction and prediction of biochemical pathways from genomic sequences using KEGG. Meeting on Genome Mapping, Sequencing & Biology(1998/5/13-17) Meeting on Genome Mapping, Sequencing & Biology(1998/5/13-17) Meeting on Genome Mapping, Sequencing & Biology(1998/5/13-17) Cold Spring Harbor Laboratory, New York, USA Cold Spring Harbor Laboratory, New York, USA Cold Spring Harbor Laboratory, New York, USA 1998/05/13 English Disclose to all
A graph theoretical approach for comparative analysis of genomic structures and biochemical pathways.[Invited] A graph theoretical approach for comparative analysis of genomic structures and biochemical pathways. [Invited] A graph theoretical approach for comparative analysis of genomic structures and biochemical pathways. [Invited] Glaxo Wellcome Symposium on Bioinformatics '98 Glaxo Wellcome Symposium on Bioinformatics '98 Glaxo Wellcome Symposium on Bioinformatics '98 Tsukuba, Nippon Glaxo Ltd. Tsukuba Research Laboratories Tsukuba, Nippon Glaxo Ltd. Tsukuba Research Laboratories Tsukuba, Nippon Glaxo Ltd. Tsukuba Research Laboratories 1998/05/07 English Disclose to all
Analysis of the metabolic pathways by the similar cluster searching method. Analysis of the metabolic pathways by the similar cluster searching method. Analysis of the metabolic pathways by the similar cluster searching method. Annual Meeting of the Molecular Biology Society of Japan(1997/12/16-19) Annual Meeting of the Molecular Biology Society of Japan(1997/12/16-19) Annual Meeting of the Molecular Biology Society of Japan(1997/12/16-19) Kyoto Kyoto Kyoto 1997/12/19 English Disclose to all
The new age of bioinformatics.[Invited] The new age of bioinformatics. [Invited] The new age of bioinformatics. [Invited] A tutuorial at Communications Research Laboratory, Ministry of Posts & Telecommunications A tutuorial at Communications Research Laboratory, Ministry of Posts & Telecommunications A tutuorial at Communications Research Laboratory, Ministry of Posts & Telecommunications Kobe Kobe Kobe 1997/06/13 English Disclose to all
Correlation between the chromosomal location of enzyme genes and the organization of metabolic pathways. Correlation between the chromosomal location of enzyme genes and the organization of metabolic pathways. Correlation between the chromosomal location of enzyme genes and the organization of metabolic pathways. Meeting on Genome Mapping & Sequencing(1997/5/14-18) Meeting on Genome Mapping & Sequencing(1997/5/14-18) Meeting on Genome Mapping & Sequencing(1997/5/14-18) Cold Spring Harbor Laboratory, New York, USA Cold Spring Harbor Laboratory, New York, USA Cold Spring Harbor Laboratory, New York, USA 1997/05/14 English Disclose to all
Gene function identification system based on the metabolic pathway database. Gene function identification system based on the metabolic pathway database. Gene function identification system based on the metabolic pathway database. Meeting on Genome Mapping & Sequencing(1997/5/14-18) Meeting on Genome Mapping & Sequencing(1997/5/14-18) Meeting on Genome Mapping & Sequencing(1997/5/14-18) Cold Spring Harbor Laboratory, New York, USA Cold Spring Harbor Laboratory, New York, USA Cold Spring Harbor Laboratory, New York, USA 1997/05/14 English Disclose to all
Genome scale prediction of enzyme genes utilizing the knowledge of metabolic interactions. (pp.252-253) Genome scale prediction of enzyme genes utilizing the knowledge of metabolic interactions. (pp.252-253) Genome scale prediction of enzyme genes utilizing the knowledge of metabolic interactions. (pp.252-253) Genome Informatics Workshop 1996(1996/12/2-3) Genome Informatics Workshop 1996(1996/12/2-3) Genome Informatics Workshop 1996(1996/12/2-3) Tokyo Tokyo Tokyo 1996/12/02 English Disclose to all
Metabolism and genome: Computation of metabolic pathways based on genome informatics. Metabolism and genome: Computation of metabolic pathways based on genome informatics. Metabolism and genome: Computation of metabolic pathways based on genome informatics. Annual Meeting of the Biophysical Society of Japan Annual Meeting of the Biophysical Society of Japan Annual Meeting of the Biophysical Society of Japan Tsukuba Tsukuba Tsukuba 1996/11/07 English Disclose to all
Analyses of metabolic pathways - function and evolution based on classification of enzymes. Analyses of metabolic pathways - function and evolution based on classification of enzymes. Analyses of metabolic pathways - function and evolution based on classification of enzymes. Annual Meeting of the Biophysical Society of Japan Annual Meeting of the Biophysical Society of Japan Annual Meeting of the Biophysical Society of Japan Tsukuba Tsukuba Tsukuba 1996/11/07 English Disclose to all
Systematic prediction of enzyme genes by the metabolic pathway database. Systematic prediction of enzyme genes by the metabolic pathway database. Systematic prediction of enzyme genes by the metabolic pathway database. Recent Advance in Genome Biology of Micro-organisms(1996/10/28-29) Recent Advance in Genome Biology of Micro-organisms(1996/10/28-29) Recent Advance in Genome Biology of Micro-organisms(1996/10/28-29) Chiba Chiba Chiba 1996/10/28 English Disclose to all
Annual Meeting of the Molecular Biology Society of Japan Annual Meeting of the Molecular Biology Society of Japan Annual Meeting of the Molecular Biology Society of Japan Annual Meeting of the Molecular Biology Society of Japan(1996/8/26-28) Annual Meeting of the Molecular Biology Society of Japan(1996/8/26-28) Annual Meeting of the Molecular Biology Society of Japan(1996/8/26-28) Sapporo Sapporo Sapporo 1996/08/28 English Disclose to all
Size distribution and evolutionary rate of intron revealed by comparison of different mammalian species. Size distribution and evolutionary rate of intron revealed by comparison of different mammalian species. Size distribution and evolutionary rate of intron revealed by comparison of different mammalian species. Progress in biophysics & molecular biology, 65, suppl.1 p.75(1996/8/11-16) Progress in biophysics & molecular biology, 65, suppl.1 p.75(1996/8/11-16) Progress in biophysics & molecular biology, 65, suppl.1 p.75(1996/8/11-16) Amsterdam, Kingdom of the Netherlands Amsterdam, Kingdom of the Netherlands Amsterdam, Kingdom of the Netherlands 1996/08/13 English Disclose to all
Statistical features identified from comparison of homologous introns. (pp.96-97) Statistical features identified from comparison of homologous introns. (pp.96-97) Statistical features identified from comparison of homologous introns. (pp.96-97) Genome Informatics Workshop 1995(1995/12/11-12) Genome Informatics Workshop 1995(1995/12/11-12) Genome Informatics Workshop 1995(1995/12/11-12) Yokohama Yokohama Yokohama 1995/12/11 English Disclose to all
Substitution rates in noncoding regions in mammalian genes. Substitution rates in noncoding regions in mammalian genes. Substitution rates in noncoding regions in mammalian genes. Annual Meeting of the Biophysical Society of Japan(1995/9/23-25) Annual Meeting of the Biophysical Society of Japan(1995/9/23-25) Annual Meeting of the Biophysical Society of Japan(1995/9/23-25) Sapporo Sapporo Sapporo 1995/09/23 English Disclose to all
A molecular modeling technique for RNA stem-loop structure. A molecular modeling technique for RNA stem-loop structure. A molecular modeling technique for RNA stem-loop structure. Annual Meeting of the Biophysical Society of Japan(1994/9/28-30) Annual Meeting of the Biophysical Society of Japan(1994/9/28-30) Annual Meeting of the Biophysical Society of Japan(1994/9/28-30) Yokohama Yokohama Yokohama 1994/09/29 English Disclose to all
Cluster analysis of amino acid indices.[Invited] Cluster analysis of amino acid indices. [Invited] Cluster analysis of amino acid indices. [Invited] Annual Meeting of the Biophysical Society of Japan(1994/9/28-30) Annual Meeting of the Biophysical Society of Japan(1994/9/28-30) Annual Meeting of the Biophysical Society of Japan(1994/9/28-30) Yokohama Yokohama Yokohama 1994/09/28 English Disclose to all
A computer modeling method for the three-dimensional structure of RNA. A computer modeling method for the three-dimensional structure of RNA. A computer modeling method for the three-dimensional structure of RNA. Annual Meeting of the Biophysical Society of Japan(1993/10/12-14) Annual Meeting of the Biophysical Society of Japan(1993/10/12-14) Annual Meeting of the Biophysical Society of Japan(1993/10/12-14) Nagoya Nagoya Nagoya 1993/10/13 English Disclose to all
Multi-omics approach to assess viral impact on marine plankton[Invited] Multi-omics approach to assess viral impact on marine plankton [Invited] KAUST Global Ocean Genome Workshop KAUST Global Ocean Genome Workshop 2017/10 Disclose to all
Biodiversity of marine plankton revealed by Tara Oceans' eco-systems approach[Invited] Biodiversity of marine plankton revealed by Tara Oceans' eco-systems approach [Invited] Tara Coral Conference Tara Coral Conference 2017/04 Disclose to all

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Title language:
External funds: competitive funds and Grants-in-Aid for Scientific Research (Kakenhi)
Type Position Title(Japanese) Title(English) Period
基盤研究(C) Representative 海洋巨大ウイルス・ヴァイロファージ・真核生物の包括的エコシステム解析 (平成26年度分) 2014/04/01-2015/03/31
基盤研究(C) Representative 海洋巨大ウイルス・ヴァイロファージ・真核生物の包括的エコシステム解析 (平成27年度分) 2015/04/01-2016/03/31
基盤研究(C) Representative 海洋巨大ウイルス・ヴァイロファージ・真核生物の包括的エコシステム解析 (平成28年度分) 2016/04/01-2017/03/31
基盤研究(B) Representative 巨大ウイルスが水圏低次生態系で果たす役割の包括的解明 (平成30年度分) 2018/04/01-2019/03/31
基盤研究(S) Assignment 凝集体生命圏:海洋炭素循環の未知制御機構の解明 2019/07/01-2023/03/31
新学術領域研究 Assignment 水圏におけるウィルス-宿主間の感染・共存機構の解明 2016/04/01-2020/03/31
基盤研究(B) Assignment 珪藻姉妹群パルマ藻と原子型中心珪藻の比較生物学による珪藻の起源・繁栄機構の解明 2017/04/01-2019/03/31
Teaching subject(s)
Name(Japanese) Name(English) Term Department Period
バイオインフォマティクス特論A Bioinformatics : Advanced Course A 前期 理学研究科 2014/04-2015/03
バイオインフォマティクス特論B Bioinformatics : Advanced Course B 後期 理学研究科 2014/04-2015/03
バイオインフォマティクス Bioinformatics 前期 理学部 2015/04-2016/03
バイオインフォマティクスゼミナールIA Seminar on Bioinformatics IA 前期 理学研究科 2015/04-2016/03
バイオインフォマティクスゼミナールIB Seminar on Bioinformatics IB 後期 理学研究科 2015/04-2016/03
バイオインフォマティクスゼミナールIC Seminar on Bioinformatics IC 前期 理学研究科 2015/04-2016/03
バイオインフォマティクスゼミナールID Seminar on Bioinformatics ID 後期 理学研究科 2015/04-2016/03
バイオインフォマティクスゼミナールIIA Seminar on Bioinformatics IIA 前期 理学研究科 2015/04-2016/03
バイオインフォマティクスゼミナールIIB Seminar on Bioinformatics IIB 後期 理学研究科 2015/04-2016/03
バイオインフォマティクスゼミナールIIC Seminar on Bioinformatics IIC 前期 理学研究科 2015/04-2016/03
バイオインフォマティクスゼミナールIID Seminar on Bioinformatics IID 後期 理学研究科 2015/04-2016/03
バイオ情報スキル Skill Development for Bioinformatics 通年不定 薬学研究科 2015/04-2016/03
特別実習(統合ゲノミクス) Reaearch Training(Integrated Genomics) 通年 薬学部 2015/04-2016/03
バイオインフォマティクス特論A Bioinformatics : Advanced Course A 前期 理学研究科 2015/04-2016/03
バイオインフォマティクス特論B Bioinformatics : Advanced Course B 後期 理学研究科 2015/04-2016/03
バイオインフォマティクス理論 Bioinformatics I: Target Discovery 後期不定 薬学研究科 2015/04-2016/03
ゲノム科学 Genome Science 後期 理学部 2015/04-2016/03
バイオインフォマティクス系コンテンツ制作 Advanced Methods in Bioinformatics 後期前期 薬学研究科 2015/04-2016/03
バイオインフォマティクス系コンテンツ制作 Advanced Methods in Bioinformatics 通年不定 薬学研究科 2015/04-2016/03
バイオインフォマティクス系研究 Research in Bioinformatics 後期前期 薬学研究科 2015/04-2016/03
バイオインフォマティクス系研究 Research in Bioinformatics 通年不定 薬学研究科 2015/04-2016/03
バイオインフォマティクス Bioinformatics 前期 理学部 2016/04-2017/03
バイオインフォマティクスゼミナールIA Seminar on Bioinformatics IA 前期 理学研究科 2016/04-2017/03
バイオインフォマティクスゼミナールIB Seminar on Bioinformatics IB 後期 理学研究科 2016/04-2017/03
バイオインフォマティクスゼミナールIC Seminar on Bioinformatics IC 前期 理学研究科 2016/04-2017/03
バイオインフォマティクスゼミナールID Seminar on Bioinformatics ID 後期 理学研究科 2016/04-2017/03
バイオインフォマティクスゼミナールIIA Seminar on Bioinformatics IIA 前期 理学研究科 2016/04-2017/03
バイオインフォマティクスゼミナールIIB Seminar on Bioinformatics IIB 後期 理学研究科 2016/04-2017/03
バイオインフォマティクスゼミナールIIC Seminar on Bioinformatics IIC 前期 理学研究科 2016/04-2017/03
バイオインフォマティクスゼミナールIID Seminar on Bioinformatics IID 後期 理学研究科 2016/04-2017/03
バイオ情報スキル Skill Development for Bioinformatics 通年不定 薬学研究科 2016/04-2017/03
特別実習(統合ゲノミクス) Reaearch Training(Integrated Genomics) 通年 薬学部 2016/04-2017/03
バイオインフォマティクス特論A Bioinformatics : Advanced Course A 前期 理学研究科 2016/04-2017/03
バイオインフォマティクス特論B Bioinformatics : Advanced Course B 後期 理学研究科 2016/04-2017/03
ゲノム科学 Genome Science 後期 理学部 2016/04-2017/03
バイオインフォマティクス系コンテンツ制作 Advanced Methods in Bioinformatics 後期前期 薬学研究科 2016/04-2017/03
バイオインフォマティクス系コンテンツ制作 Advanced Methods in Bioinformatics 通年不定 薬学研究科 2016/04-2017/03
バイオインフォマティクス系研究 Research in Bioinformatics 後期前期 薬学研究科 2016/04-2017/03
バイオインフォマティクス系研究 Research in Bioinformatics 通年不定 薬学研究科 2016/04-2017/03
バイオインフォマティクス Bioinformatics 前期 理学研究科 2017/04-2018/03
バイオインフォマティクス Bioinformatics 前期 理学部 2017/04-2018/03
バイオインフォマティクスゼミナールIA Seminar on Bioinformatics IA 前期 理学研究科 2017/04-2018/03
バイオインフォマティクスゼミナールIB Seminar on Bioinformatics IB 後期 理学研究科 2017/04-2018/03
バイオインフォマティクスゼミナールIC Seminar on Bioinformatics IC 前期 理学研究科 2017/04-2018/03
バイオインフォマティクスゼミナールID Seminar on Bioinformatics ID 後期 理学研究科 2017/04-2018/03
バイオインフォマティクスゼミナールIIA Seminar on Bioinformatics IIA 前期 理学研究科 2017/04-2018/03
バイオインフォマティクスゼミナールIIB Seminar on Bioinformatics IIB 後期 理学研究科 2017/04-2018/03
バイオインフォマティクスゼミナールIIC Seminar on Bioinformatics IIC 前期 理学研究科 2017/04-2018/03
バイオインフォマティクスゼミナールIID Seminar on Bioinformatics IID 後期 理学研究科 2017/04-2018/03
バイオ情報スキル Skill Development for Bioinformatics 通年不定 薬学研究科 2017/04-2018/03
特別実習(統合ゲノミクス) Reaearch Training(Integrated Genomics) 通年 薬学部 2017/04-2018/03
バイオインフォマティクス特論A Bioinformatics : Advanced Course A 前期 理学研究科 2017/04-2018/03
バイオインフォマティクス特論B Bioinformatics : Advanced Course B 後期 理学研究科 2017/04-2018/03
バイオインフォマティクス理論 Bioinformatics I: Target Discovery 後期不定 薬学研究科 2017/04-2018/03
ゲノム科学 Genome Science 後期 理学部 2017/04-2018/03
バイオインフォマティクス系コンテンツ制作 Advanced Methods in Bioinformatics 通年不定 薬学研究科 2017/04-2018/03
バイオインフォマティクス系研究 Research in Bioinformatics 通年不定 薬学研究科 2017/04-2018/03
統合生物多様性論 Advanced Lectures : Integrative Biological Diversity 前期 理学研究科 2017/04-2018/03
「薬の世界」入門 Introduction to Pharmaceutical Sciences and Ethics 前期 全学共通科目 2017/04-2018/03
バイオインフォマティクス Bioinformatics 前期 理学研究科 2018/04-2019/03
バイオインフォマティクス Bioinformatics 前期 理学部 2018/04-2019/03
バイオインフォマティクスゼミナールIA Seminar on Bioinformatics IA 前期 理学研究科 2018/04-2019/03
バイオインフォマティクスゼミナールIB Seminar on Bioinformatics IB 後期 理学研究科 2018/04-2019/03
バイオインフォマティクスゼミナールIC Seminar on Bioinformatics IC 前期 理学研究科 2018/04-2019/03
バイオインフォマティクスゼミナールID Seminar on Bioinformatics ID 後期 理学研究科 2018/04-2019/03
バイオインフォマティクスゼミナールIIA Seminar on Bioinformatics IIA 前期 理学研究科 2018/04-2019/03
バイオインフォマティクスゼミナールIIB Seminar on Bioinformatics IIB 後期 理学研究科 2018/04-2019/03
バイオインフォマティクスゼミナールIIC Seminar on Bioinformatics IIC 前期 理学研究科 2018/04-2019/03
バイオインフォマティクスゼミナールIID Seminar on Bioinformatics IID 後期 理学研究科 2018/04-2019/03
バイオ情報スキル Skill Development for Bioinformatics 通年不定 薬学研究科 2018/04-2019/03
特別実習(統合ゲノミクス) Reaearch Training(Integrated Genomics) 通年 薬学部 2018/04-2019/03
生物物理学入門 Introduction to Biophysics 前期 全学共通科目 2018/04-2019/03
ゲノム科学 Genome Science 後期 理学部 2018/04-2019/03
バイオインフォマティクス系コンテンツ制作 Advanced Methods in Bioinformatics 通年不定 薬学研究科 2018/04-2019/03
バイオインフォマティクス系研究 Research in Bioinformatics 後期前期 薬学研究科 2018/04-2019/03
バイオインフォマティクス系研究 Research in Bioinformatics 通年不定 薬学研究科 2018/04-2019/03
「薬の世界」入門 Introduction to Pharmaceutical Sciences and Ethics 前期 全学共通科目 2018/04-2019/03
バイオインフォマティクス Bioinformatics 前期 理学研究科 2019/04-2020/03
バイオインフォマティクス Bioinformatics 前期 理学部 2019/04-2020/03
バイオインフォマティクスゼミナールIA Seminar on Bioinformatics IA 前期 理学研究科 2019/04-2020/03
バイオインフォマティクスゼミナールIB Seminar on Bioinformatics IB 後期 理学研究科 2019/04-2020/03
バイオインフォマティクスゼミナールIC Seminar on Bioinformatics IC 前期 理学研究科 2019/04-2020/03
バイオインフォマティクスゼミナールID Seminar on Bioinformatics ID 後期 理学研究科 2019/04-2020/03
バイオインフォマティクスゼミナールIIA Seminar on Bioinformatics IIA 前期 理学研究科 2019/04-2020/03
バイオインフォマティクスゼミナールIIB Seminar on Bioinformatics IIB 後期 理学研究科 2019/04-2020/03
バイオインフォマティクスゼミナールIIC Seminar on Bioinformatics IIC 前期 理学研究科 2019/04-2020/03
バイオインフォマティクスゼミナールIID Seminar on Bioinformatics IID 後期 理学研究科 2019/04-2020/03
バイオ情報スキル Skill Development for Bioinformatics 通年不定 薬学研究科 2019/04-2020/03
特別実習(統合ゲノミクス) Reaearch Training(Integrated Genomics) 通年 薬学部 2019/04-2020/03
バイオインフォマティクス特論 Bioinformatics :Advanced Course 後期 理学研究科 2019/04-2020/03
バイオインフォマティクス理論 Bioinformatics I: Target Discovery 後期不定 薬学研究科 2019/04-2020/03
生物物理学入門 Introduction to Biophysics 前期 全学共通科目 2019/04-2020/03
ゲノム科学 Genome Science 後期 理学部 2019/04-2020/03
バイオインフォマティクス系コンテンツ制作 Advanced Methods in Bioinformatics 前期不定 薬学研究科 2019/04-2020/03
バイオインフォマティクス系コンテンツ制作 Advanced Methods in Bioinformatics 後期不定 薬学研究科 2019/04-2020/03
バイオインフォマティクス系コンテンツ制作 Advanced Methods in Bioinformatics 通年不定 薬学研究科 2019/04-2020/03
バイオインフォマティクス系研究 Research in Bioinformatics 前期不定 薬学研究科 2019/04-2020/03
バイオインフォマティクス系研究 Research in Bioinformatics 後期不定 薬学研究科 2019/04-2020/03
バイオインフォマティクス系研究 Research in Bioinformatics 通年不定 薬学研究科 2019/04-2020/03
「薬の世界」入門 Introduction to Pharmaceutical Sciences and Ethics 前期 全学共通科目 2019/04-2020/03

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School management (title, position)
Title Period
バイオインフォマティクスセンター長 2015/04/01-2017/03/31
国際教育委員会国際学生交流委員会アムジェン・スカラーズ・プログラム小委員会 委員 2017/12/21-2019/03/31
情報環境機構KUINS利用負担金検討委員会委員 2017/04/01-2019/03/31
情報環境機構研究用計算機専門委員会委員 2018/04/01-2020/03/31
情報環境機構基盤システム運用委員会委員 2018/04/01-2020/03/31
学術情報メディアセンター全国共同利用運営委員会委員 2018/04/01-2020/03/31
Faculty management (title, position)
Title Period
化学研究所ゲノムネット推進室運営委員会委員 2014/04/01-2015/03/31
化学研究所広報委員会委員 2014/04/01-2015/03/31
化学研究所産学連携委員会委員 2014/04/01-2015/03/31
化学研究所情報セキュリティ委員会委員 2014/04/01-2015/03/31
化学研究所ゲノムネット推進室運営委員会委員 2015/04/01-2017/03/31
化学研究所運営委員会委員 2015/04/01-2016/03/31
化学研究所広報委員会委員 2015/04/01-2016/03/31
化学研究所将来問題・研究活性化委員会委員 2015/04/01-2016/03/31
化学研究所設備運営委員会委員 2015/04/01-2016/03/31
化学研究所総務・教務委員会委員長 2015/04/01-2016/03/31
化学研究所運営委員会委員 2016/04/01-2017/03/31
化学研究所財務委員会委員 2016/04/01-2017/03/31
化学研究所自己点検評価委員会委員 2016/04/01-2017/03/31
化学研究所広報委員会委員 2016/04/01-2017/03/31
化学研究所建物管理委員会委員 2016/04/01-2017/03/31
2017/04/01-2019/03/31
化学研究所広報委員会委員 2017/04/01-2018/03/31
化学研究所産学連携委員会委員 2017/04/01-2018/03/31
化学研究所将来問題・研究活性化委員会委員 2017/04/01-2018/03/31
2018/04/01-2019/03/31
2018/04/01-2019/03/31
化学研究所産学連携委員会委員 2018/04/01-2019/03/31
化学研究所設備運営委員会委員 2018/04/01-2019/03/31
化学研究所ゲノムネット推進室運営委員会委員 2017/04/01-2019/03/31
京都大学宇治キャンパス公開2019実行委員会 2019/01/01-2019/12/31
化学研究所講演委員会委員長 2019/04/01-2020/03/31
化学研究所設備運営委員会委員 2019/04/01-2020/03/31
化学研究所ゲノムネット推進室運営委員会委員 2019/04/01-2022/03/31

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