森 智弥

Last Update: 2019/06/21 19:24:15

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Name(Kanji/Kana/Abecedarium Latinum)
森 智弥/モリ トモヤ/Mori, Tomoya
Primary Affiliation(Org1/Job title)
Institute for Chemical Research (ICR)/Assistant Professor
Affiliated programs (koza)
Org1 Job title
Graduate Schools Informatics Assistant Professor
Academic Organizations You are Affiliated to in Japan
Organization name(Japanese) Organization name(English)
日本バイオインフォマティクス学会 Japanese Society for Bioinformatics
情報処理学会 Information Processing Society of Japan
Academic Degree
Field(Japanese) Field(English) University(Japanese) University(English) Method
修士(情報学) 京都大学
博士(情報学) 京都大学
Graduate School
University(Japanese) University(English) Faculty(Japanese) Faculty(English) Major(Japanese) Major(English) Degree
京都大学 大学院情報学研究科修士課程知能情報学専攻 修了
京都大学 大学院情報学研究科博士後期課程知能情報学専攻 修了
Undergraduate School / Major(s)
University(Japanese) University(English) Faculty(Japanese) Faculty(English) Major(s)(Japanese) Major(s)(English) Degree
同志社大学 工学部インテリジェント情報工学科 卒業
High School
Highschool Kana
学校法人ヴィアトール学園 洛星高等学校
Work Experience
Period Organization(Japanese) Organization(English) Job title(Japanese) Job title(English)
2013/04/01-2014/03/31 同志社大学 文化情報学部 Faculty of Culture and Information Science, Doshisha University 実習助手
2014/04/01-2015/09/30 京都大学 化学研究所 バイオインフォマティクスセンター Bioinformatics Center, Institute for Chemical Research, Kyoto University 日本学術振興会 特別研究員 (DC2) JSPS Research Fellowship for Young Scientists (DC2)
2015/10/01-2015/10/31 京都大学 化学研究所 バイオインフォマティクスセンター Bioinformatics Center, Institute for Chemical Research, Kyoto University 日本学術振興会 特別研究員 (PD) JSPS Research Fellowship for Young Scientists (PD)
2015/11/01-2016/03/31 京都大学 iPS細胞研究所 Center for iPS Cell Research and Application, Kyoto University 日本学術振興会 特別研究員 (PD) JSPS Research Fellowship for Young Scientists (PD)
2016/04/01-2018/03/31 京都大学 iPS細胞研究所 Center for iPS Cell Research and Application, Kyoto University 特定研究員 Researcher
2018/04/01- 京都大学 化学研究所 バイオインフォマティクスセンター Bioinformatics Center, Institute for Chemical Research, Kyoto University 助教 Assistant Professor
Personal Profile
(Japanese)
2015年京都大学大学院情報学研究科博士後期課程修了。情報学博士。京都大学化学研究所バイオインフォマティクスセンター、京都大学iPS細胞研究所を経て、2018年より京都大学化学研究所バイオインフォマティクスセンター助教(情報学研究科知能情報学専攻協力講座)。専門はバイオインフォマティクスに関連するアルゴリズム開発及び細胞のマルチオミックスデータ解析である。日本バイオインフォマティクス学会及び情報処理学会の会員。
(English)
Tomoya Mori received his Ph.D. degree in informatics from Kyoto University, Japan, in 2015. After working in Bioinformatics Center, Institute for Chemical Research, Kyoto University and Center for iPS Cell Research and Application, Kyoto University, he joined Bioinformatics Center, Institute for Chemical Research, Kyoto University, Japan as a assistant professor in Apr. 2018. His research interests are algorithms for bioinformatics and multi-omics analysis.
Personal Website(s) (URL(s))
URL
http://rdb.kuicr.kyoto-u.ac.jp/researchers/view/tomoya+mori
http://sunflower.kuicr.kyoto-u.ac.jp/~tmori/
researchmap URL
https://researchmap.jp/7000023223
Research Topics
(Japanese)
バイオインフォマティクス、グラフ理論に関するアルゴリズム開発、マルチオミックス解析
(English)
Bioinformatics, Algorithms for Graph Theory, Multi-omics analysis
Overview of the research
(Japanese)
1. グラフ構造データの比較アルゴリズム開発, 2. ブーリアンネットワークによるシグナル伝達ネットワークのモデル化とシミュレーション, 3. 単一細胞トランスクリプトーム及びメチローム解析
(English)
1. Algorithms for comparing graph-structured data, 2. Modeling and simulation of signaling network using Boolean network, 3. Single-cell Transcriptome/Methylome analysis
Fields of research (key words)
Key words(Japanese) Key words(English)
バイオインフォマティクス Bioinformatics
離散アルゴリズム Discrete algorithm
単一細胞解析 Single-cell analysis
Published Papers
Author Author(Japanese) Author(English) Title Title(Japanese) Title(English) Bibliography Bibliography(Japanese) Bibliography(English) Publication date Refereed paper Language Publishing type Disclose
Liu L, Mori T, Zhao Y, Hayashida M, Akutsu T Liu L, Mori T, Zhao Y, Hayashida M, Akutsu T Liu L, Mori T, Zhao Y, Hayashida M, Akutsu T Euler string-based compression of tree-structured data and its application to analysis of RNAs Euler string-based compression of tree-structured data and its application to analysis of RNAs Euler string-based compression of tree-structured data and its application to analysis of RNAs Current Bioinformatics, 13, 1, 25-33 Current Bioinformatics, 13, 1, 25-33 Current Bioinformatics, 13, 1, 25-33 2018 Refereed English Research paper(scientific journal) Disclose to all
Mori T, Yamane J, Kobayashi K, Taniyama N, Tano T, Fujibuchi W Mori T, Yamane J, Kobayashi K, Taniyama N, Tano T, Fujibuchi W Mori T, Yamane J, Kobayashi K, Taniyama N, Tano T, Fujibuchi W Development of 3D tissue reconstruction method from single-cell RNA-seq data Development of 3D tissue reconstruction method from single-cell RNA-seq data Development of 3D tissue reconstruction method from single-cell RNA-seq data Genomics and Computational Biology, 3, 1, e53 Genomics and Computational Biology, 3, 1, e53 Genomics and Computational Biology, 3, 1, e53 2017 Refereed English Research paper(international conference proceedings) Disclose to all
Yamane J, Mori T, Taniyama N, Kobayashi K, Fujibuchi W Yamane J, Mori T, Taniyama N, Kobayashi K, Fujibuchi W Yamane J, Mori T, Taniyama N, Kobayashi K, Fujibuchi W Development of enhanced reduced representation bisulfite sequencing method for single-cell methylome analysis Development of enhanced reduced representation bisulfite sequencing method for single-cell methylome analysis Development of enhanced reduced representation bisulfite sequencing method for single-cell methylome analysis Genomics and Computational Biology, 3, 2, e49 Genomics and Computational Biology, 3, 2, e49 Genomics and Computational Biology, 3, 2, e49 2017 Refereed English Research paper(international conference proceedings) Disclose to all
Kato Y, Mori T, Sato K, Maegawa S, Hosokawa H, Akutsu T Kato Y, Mori T, Sato K, Maegawa S, Hosokawa H, Akutsu T Kato Y, Mori T, Sato K, Maegawa S, Hosokawa H, Akutsu T An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data Bioinformatics, 33, 2, 201-209 Bioinformatics, 33, 2, 201-209 Bioinformatics, 33, 2, 201-209 2017 Refereed English Research paper(scientific journal) Disclose to all
Cheng X, Mori T, Qiu Y, Ching W-K, Akutsu T Cheng X, Mori T, Qiu Y, Ching W-K, Akutsu T Cheng X, Mori T, Qiu Y, Ching W-K, Akutsu T Exact identification of the structure of a probabilistic Boolean network from sample Exact identification of the structure of a probabilistic Boolean network from sample Exact identification of the structure of a probabilistic Boolean network from sample IEEE/ACM Transactions on Computational Biology and Bioinformatics, 13, 5, 1107-1116 IEEE/ACM Transactions on Computational Biology and Bioinformatics, 13, 5, 1107-1116 IEEE/ACM Transactions on Computational Biology and Bioinformatics, 13, 5, 1107-1116 2016 Refereed English Research paper(scientific journal) Disclose to all
Hasegawa T, Niida A, Mori T, Shimamura T, Yamaguchi R, Miyano S, Akutsu T, Imoto S Hasegawa T, Niida A, Mori T, Shimamura T, Yamaguchi R, Miyano S, Akutsu T, Imoto S Hasegawa T, Niida A, Mori T, Shimamura T, Yamaguchi R, Miyano S, Akutsu T, Imoto S A likelihood-free filtering method via approximate Bayesian computation in evaluating biologival simulation models A likelihood-free filtering method via approximate Bayesian computation in evaluating biologival simulation models A likelihood-free filtering method via approximate Bayesian computation in evaluating biologival simulation models Computational Statistics and Data Analysis, 94, 63-74 Computational Statistics and Data Analysis, 94, 63-74 Computational Statistics and Data Analysis, 94, 63-74 2016 Refereed English Research paper(scientific journal) Disclose to all
Mori T, Takasu A, Jansson J, Hwang J, Tamura T, Akutsu T Mori T, Takasu A, Jansson J, Hwang J, Tamura T, Akutsu T Mori T, Takasu A, Jansson J, Hwang J, Tamura T, Akutsu T Similar subtree search using extended tree inclusion Similar subtree search using extended tree inclusion Similar subtree search using extended tree inclusion IEEE Transactions on Knowledge and Data Engineering, 27, 12, 3360-3373 IEEE Transactions on Knowledge and Data Engineering, 27, 12, 3360-3373 IEEE Transactions on Knowledge and Data Engineering, 27, 12, 3360-3373 2015 Refereed English Research paper(scientific journal) Disclose to all
Mori T, Flöttmann M, Krantz M, Akutsu T, Klipp E Mori T, Flöttmann M, Krantz M, Akutsu T, Klipp E Mori T, Flöttmann M, Krantz M, Akutsu T, Klipp E Stochastic simulation of Boolean rxncon model: towards quantitative analysis of large signaling networks Stochastic simulation of Boolean rxncon model: towards quantitative analysis of large signaling networks Stochastic simulation of Boolean rxncon model: towards quantitative analysis of large signaling networks BMC Systems biology, 9, 45, 9 pages BMC Systems biology, 9, 45, 9 pages BMC Systems biology, 9, 45, 9 pages 2015 Refereed English Research paper(scientific journal) Disclose to all
Hasegawa T, Mori T, Yamaguchi R, Shimamura T, Miyano S, Imoto S, Akutsu T Hasegawa T, Mori T, Yamaguchi R, Shimamura T, Miyano S, Imoto S, Akutsu T Hasegawa T, Mori T, Yamaguchi R, Shimamura T, Miyano S, Imoto S, Akutsu T Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks BMC Systems biology, 9, 14, 13 pages BMC Systems biology, 9, 14, 13 pages BMC Systems biology, 9, 14, 13 pages 2015 Refereed English Research paper(scientific journal) Disclose to all
Hasegawa T, Mori T, Yamaguchi T, Imoto S, Miyano S, Akutsu T Hasegawa T, Mori T, Yamaguchi T, Imoto S, Miyano S, Akutsu T Hasegawa T, Mori T, Yamaguchi T, Imoto S, Miyano S, Akutsu T An efficient data assimilation schema for restoration and extension of gene regulatory networks using time-course observation data An efficient data assimilation schema for restoration and extension of gene regulatory networks using time-course observation data An efficient data assimilation schema for restoration and extension of gene regulatory networks using time-course observation data Journal of Computational Biology, 21, 11, 785-798 Journal of Computational Biology, 21, 11, 785-798 Journal of Computational Biology, 21, 11, 785-798 2014 Refereed English Research paper(scientific journal) Disclose to all
Mori T, Tamura T, Fukagawa D, Takasu A, Tomita E, Akutsu T Mori T, Tamura T, Fukagawa D, Takasu A, Tomita E, Akutsu T Mori T, Tamura T, Fukagawa D, Takasu A, Tomita E, Akutsu T A clique-based method using dynamic programming for computing edit distance between unordered trees A clique-based method using dynamic programming for computing edit distance between unordered trees A clique-based method using dynamic programming for computing edit distance between unordered trees Journal of Computational Biology, 19, 10, 1089-1104 Journal of Computational Biology, 19, 10, 1089-1104 Journal of Computational Biology, 19, 10, 1089-1104 2012 Refereed English Research paper(scientific journal) Disclose to all

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Title language:
Misc
Author Author(Japanese) Author(English) Title Title(Japanese) Title(English) Bibliography Bibliography(Japanese) Bibliography(English) Publication date Refereed paper Language Publishing type Disclose
劉立偉, 森智弥, 趙楊, 林田守広, 阿久津達也 劉立偉, 森智弥, 趙楊, 林田守広, 阿久津達也 劉立偉, 森智弥, 趙楊, 林田守広, 阿久津達也 根付き順序木の圧縮における分割型文法とオイラー文字列との比較 根付き順序木の圧縮における分割型文法とオイラー文字列との比較 根付き順序木の圧縮における分割型文法とオイラー文字列との比較 電子情報通信学会技術研究報告, 115, 112, 245-246 電子情報通信学会技術研究報告, 115, 112, 245-246 電子情報通信学会技術研究報告, 115, 112, 245-246 2015 Japanese Disclose to all
Akutsu T, Mori T, Tamura T, Fukagawa D, Takasu A, Tomita E Akutsu T, Mori T, Tamura T, Fukagawa D, Takasu A, Tomita E Akutsu T, Mori T, Tamura T, Fukagawa D, Takasu A, Tomita E An improved clique-based method for computing edit distance between unordered trees and its application to comparison of glycan structures An improved clique-based method for computing edit distance between unordered trees and its application to comparison of glycan structures An improved clique-based method for computing edit distance between unordered trees and its application to comparison of glycan structures Proceedings of the International Conference on Complex, Intelligent and Software Intensive Systems, CISIS 2011, 536-540 Proceedings of the International Conference on Complex, Intelligent and Software Intensive Systems, CISIS 2011, 536-540 Proceedings of the International Conference on Complex, Intelligent and Software Intensive Systems, CISIS 2011, 536-540 2011 Refereed English Disclose to all
Title language:
Conference Activities & Talks
Title Title(Japanese) Title(English) Conference Conference(Japanese) Conference(English) Promotor Promotor(Japanese) Promotor(English) Date Language Assortment Disclose
In silicon 3D tissue reconstruction In silico 3D tissue reconstruction In silicon 3D tissue reconstruction Japan-Germany International Workshop 2018-1 The Human Cell Type Authentication Initiative Japan-Germany International Workshop 2018-1 The Human Cell Type Authentication Initiative Japan-Germany International Workshop 2018-1 The Human Cell Type Authentication Initiative 2018/04 English Disclose to all
Development of ab initio 3D reconstruction algorithm for mid-gastrula mouse embryo from transcriptome using kernel self-organizing map Development of ab initio 3D reconstruction algorithm for mid-gastrula mouse embryo from transcriptome using kernel self-organizing map Development of ab initio 3D reconstruction algorithm for mid-gastrula mouse embryo from transcriptome using kernel self-organizing map Single Cell Science Symposium “Technology Meets Biology” Single Cell Science Symposium “Technology Meets Biology” Single Cell Science Symposium “Technology Meets Biology” 2017/07 English Oral presentation(general) Disclose to all
Development of 3D tissue reconstruction method from single-cell RNA-seq data Development of 3D tissue reconstruction method from single-cell RNA-seq data Development of 3D tissue reconstruction method from single-cell RNA-seq data 2nd Challenges in Computational Biology: Gene Expression Data Analysis 2nd Challenges in Computational Biology: Gene Expression Data Analysis 2nd Challenges in Computational Biology: Gene Expression Data Analysis 2016/12 English Oral presentation(general) Disclose to all
無順序木間の編集距離計算のための動的計画法を用いたクリークに基づく手法 無順序木間の編集距離計算のための動的計画法を用いたクリークに基づく手法 無順序木間の編集距離計算のための動的計画法を用いたクリークに基づく手法 生命情報科学若手の会 生命情報科学若手の会 2014/10 Japanese Oral presentation(general) Disclose to all
A clique-based method using dynamic programming for unordered tree edit distance problem A clique-based method using dynamic programming for unordered tree edit distance problem A clique-based method using dynamic programming for unordered tree edit distance problem The 12th International Workshop on Bioinformatics and Systems Biology, The 12th International Workshop on Bioinformatics and Systems Biology, The 12th International Workshop on Bioinformatics and Systems Biology, 2012/07 English Oral presentation(general) Disclose to all
An improved clique-based method for computing edit distance between rooted unordered trees An improved clique-based method for computing edit distance between rooted unordered trees An improved clique-based method for computing edit distance between rooted unordered trees 情報処理学会バイオ情報学研究会 情報処理学会バイオ情報学研究会 情報処理学会バイオ情報学研究会 2011/09 English Oral presentation(general) Disclose to all
Title language:
Books etc
Author Author(Japanese) Author(English) Title Title(Japanese) Title(English) Publisher Publisher(Japanese) Publisher(English) Publication date Language Type Disclose
森 智弥, 藤渕 航 森 智弥, 藤渕 航 森 智弥, 藤渕 航 実験医学増刊34(17):再生医療と疾患解明の鍵となる組織幹細胞 実験医学増刊34(17):再生医療と疾患解明の鍵となる組織幹細胞 実験医学増刊34(17):再生医療と疾患解明の鍵となる組織幹細胞 羊土社 羊土社 羊土社 2016/10 Contributor Disclose to all
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Awards
Title(Japanese) Title(English) Organization name(Japanese) Organization name(English) Date
バイオ情報学研究会 学生奨励賞 IPSJ SIGBIO Best Student Presentation Award 情報処理学会 バイオ情報学研究会 SIG BIO 2011
情報処理学会 山下記念研究賞 IPSJ Yamashita SIG Research Award 情報処理学会 Information Processing Society of Japan 2013
External funds: competitive funds and Grants-in-Aid for Scientific Research (Kakenhi)
Type Position Title(Japanese) Title(English) Period
特別研究員奨励費 Representative 確率ブーリアンネットワークを用いた細胞内シグナル伝達機構のモデル化とシミュレーション 2014/04/01-2016/03/31
若手研究B Representative DNAメチル化情報に基づく細胞の詳細な分類と評価手法の開発 2017/04/01-2019/03/31
若手研究 Representative 単一細胞オミックスデータに基づく細胞系譜推定および比較アルゴリズムの開発 2019/04/01-2022/03/31
Faculty management (title, position)
Title Period
化学研究所広報委員会委員 2019/04/01-2020/03/31
化学研究所情報システム技術委員会委員 2019/04/01-2020/03/31
Experience of living abroad
Organization Department Research theme Country Period
フンボルト大学(Humboldt University) Theoretical biophysics laboratory 確率ブーリアンネットワークを用いたシグナル伝達ネットワークの数理モデル化 ドイツ 2012/12/-2013/03/